RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 THYN1Q9P016 225 aa9.27□□□□□ -0.93
USP54-209ENST00000464635 SLC45A2Q9UMX9 530 aa9.27□□□□□ -0.93
USP54-209ENST00000464635 MOB4Q9Y3A3 225 aa9.27□□□□□ -0.93
USP54-209ENST00000464635 IGHV7-81A0A0B4J1V7 117 aa9.26□□□□□ -0.93
USP54-209ENST00000464635 NCBP2LA6PVI3 153 aaKnown RBP9.26□□□□□ -0.93
USP54-209ENST00000464635 AGPAT2O15120 278 aa9.26□□□□□ -0.93
USP54-209ENST00000464635 DEFA6Q01524 100 aa9.26□□□□□ -0.93
USP54-209ENST00000464635 ZNF616Q08AN1 781 aa9.26□□□□□ -0.93
USP54-209ENST00000464635 AKIRIN2Q53H80 203 aa9.26□□□□□ -0.93
USP54-209ENST00000464635 FFAR4Q5NUL3 377 aa9.26□□□□□ -0.93
USP54-209ENST00000464635 C10orf55Q5SWW7 151 aa9.26□□□□□ -0.93
USP54-209ENST00000464635 C10orf91Q5T1B1 145 aa9.26□□□□□ -0.93
USP54-209ENST00000464635 OR10G4Q8NGN3 311 aa9.26□□□□□ -0.93
USP54-209ENST00000464635 OR10G9Q8NGN4 311 aa9.26□□□□□ -0.93
USP54-209ENST00000464635 OR10G7Q8NGN6 311 aa9.26□□□□□ -0.93
USP54-209ENST00000464635 OR4X1Q8NH49 305 aa9.26□□□□□ -0.93
USP54-209ENST00000464635 SUN5Q8TC36 379 aa9.26□□□□□ -0.93
USP54-209ENST00000464635 PCNPQ8WW12 178 aaKnown RBP9.26□□□□□ -0.93
USP54-209ENST00000464635 TRGV9Q99603 122 aa9.26□□□□□ -0.93
USP54-209ENST00000464635 TXNDC17Q9BRA2 123 aa9.26□□□□□ -0.93
USP54-209ENST00000464635 SCRT1Q9BWW7 348 aa9.26□□□□□ -0.93
USP54-209ENST00000464635 SLC39A9Q9NUM3 307 aa9.26□□□□□ -0.93
USP54-209ENST00000464635 TRAV30A0A087WSZ9 112 aa9.25□□□□□ -0.93
USP54-209ENST00000464635 TMEM218A2RU14 115 aa9.25□□□□□ -0.93
USP54-209ENST00000464635 A6NDX4 124 aa9.25□□□□□ -0.93
USP54-209ENST00000464635 H3BUX3 64 aa9.25□□□□□ -0.93
USP54-209ENST00000464635 I3L521 148 aa9.25□□□□□ -0.93
USP54-209ENST00000464635 FHITP49789 147 aa9.25□□□□□ -0.93
USP54-209ENST00000464635 PLP1P60201 277 aa9.25□□□□□ -0.93
USP54-209ENST00000464635 AKR1C1Q04828 323 aa9.25□□□□□ -0.93
USP54-209ENST00000464635 HNF4GQ14541 408 aa9.25□□□□□ -0.93
USP54-209ENST00000464635 LY6EQ16553 131 aa9.25□□□□□ -0.93
USP54-209ENST00000464635 KHDC3LQ587J8 217 aa9.25□□□□□ -0.93
USP54-209ENST00000464635 HIST2H2BDQ6DRA6 164 aa9.25□□□□□ -0.93
USP54-209ENST00000464635 ACSM6Q6P461 480 aa9.25□□□□□ -0.93
USP54-209ENST00000464635 C5orf56Q8N8D9 126 aa9.25□□□□□ -0.93
USP54-209ENST00000464635 OR5R1Q8NH85 324 aa9.25□□□□□ -0.93
USP54-209ENST00000464635 GATAD1Q8WUU5 269 aa9.25□□□□□ -0.93
USP54-209ENST00000464635 RCC1LQ96I51 464 aaKnown RBP9.25□□□□□ -0.93
USP54-209ENST00000464635 TXN2Q99757 166 aa9.25□□□□□ -0.93
USP54-209ENST00000464635 SSX3Q99909 188 aa9.25□□□□□ -0.93
USP54-209ENST00000464635 WNT10AQ9GZT5 417 aa9.25□□□□□ -0.93
USP54-209ENST00000464635 C16orf95Q9H693 158 aa9.25□□□□□ -0.93
USP54-209ENST00000464635 FNDC4Q9H6D8 234 aaPredicted RBP9.25□□□□□ -0.93
USP54-209ENST00000464635 TCRBV4S1A1TA0A5B7 111 aa9.24□□□□□ -0.93
USP54-209ENST00000464635 SMCO3A2RU48 225 aa9.24□□□□□ -0.93
USP54-209ENST00000464635 I3L2K1 104 aa9.24□□□□□ -0.93
USP54-209ENST00000464635 MT-CO2P00403 227 aa9.24□□□□□ -0.93
USP54-209ENST00000464635 FABP1P07148 127 aa9.24□□□□□ -0.93
USP54-209ENST00000464635 AREGP15514 252 aa9.24□□□□□ -0.93
USP54-209ENST00000464635 PSMB3P49720 205 aa9.24□□□□□ -0.93
USP54-209ENST00000464635 B2MP61769 119 aa9.24□□□□□ -0.93
USP54-209ENST00000464635 TOR2AQ5JU69 321 aa9.24□□□□□ -0.93
USP54-209ENST00000464635 SFT2D1Q8WV19 159 aa9.24□□□□□ -0.93
USP54-209ENST00000464635 TMEM190Q8WZ59 177 aa9.24□□□□□ -0.93
USP54-209ENST00000464635 SLC25A33Q9BSK2 321 aa9.24□□□□□ -0.93
USP54-209ENST00000464635 SEC11CQ9BY50 192 aa9.24□□□□□ -0.93
USP54-209ENST00000464635 PXMP4Q9Y6I8 212 aa9.24□□□□□ -0.93
USP54-209ENST00000464635 ARL2-SNX15V9GYD0 113 aa9.24□□□□□ -0.93
USP54-209ENST00000464635 NOTCH1P46531 2555 aa9.24□□□□□ -0.93
USP54-209ENST00000464635 IGLV11-55A0A075B6I3 123 aa9.23□□□□□ -0.93
USP54-209ENST00000464635 IGKV1OR2-108A0A075B7D4 117 aa9.23□□□□□ -0.93
USP54-209ENST00000464635 ELOA3CA0A087WX78 387 aaPredicted RBP9.23□□□□□ -0.93
USP54-209ENST00000464635 A0A1W2PPV4 95 aa9.23□□□□□ -0.93
USP54-209ENST00000464635 H3BUA1 57 aa9.23□□□□□ -0.93
USP54-209ENST00000464635 M0QZ24 198 aa9.23□□□□□ -0.93
USP54-209ENST00000464635 YIF1AO95070 293 aa9.23□□□□□ -0.93
USP54-209ENST00000464635 IFNA1P01562 189 aa9.23□□□□□ -0.93
USP54-209ENST00000464635 HSPB1P04792 205 aaKnown RBP9.23□□□□□ -0.93
USP54-209ENST00000464635 IGF1P05019 195 aa9.23□□□□□ -0.93
USP54-209ENST00000464635 LINC00869P0C866 280 aa9.23□□□□□ -0.93
USP54-209ENST00000464635 EGR2P11161 476 aaPredicted RBP9.23□□□□□ -0.93
USP54-209ENST00000464635 DEFA4P12838 97 aa9.23□□□□□ -0.93
USP54-209ENST00000464635 MFAP2P55001 183 aa9.23□□□□□ -0.93
USP54-209ENST00000464635 RHOBP62745 196 aa9.23□□□□□ -0.93
USP54-209ENST00000464635 GNB1P62873 340 aa9.23□□□□□ -0.93
USP54-209ENST00000464635 ZNF726P1Q15940 193 aa9.23□□□□□ -0.93
USP54-209ENST00000464635 GUK1Q16774 197 aa9.23□□□□□ -0.93
USP54-209ENST00000464635 ZNF506Q5JVG8 444 aa9.23□□□□□ -0.93
USP54-209ENST00000464635 CYP2G1PQ6ZSU1 146 aa9.23□□□□□ -0.93
USP54-209ENST00000464635 STPG3Q8N7X2 389 aa9.23□□□□□ -0.93
USP54-209ENST00000464635 OR1L4Q8NGR5 311 aa9.23□□□□□ -0.93
USP54-209ENST00000464635 FAM110DQ8TAY7 271 aaPredicted RBP9.23□□□□□ -0.93
USP54-209ENST00000464635 VN1R17PQ8TDU5 208 aa9.23□□□□□ -0.93
USP54-209ENST00000464635 PFDN5Q99471 154 aa9.23□□□□□ -0.93
USP54-209ENST00000464635 MRPL32Q9BYC8 188 aaKnown RBP9.23□□□□□ -0.93
USP54-209ENST00000464635 VSIRQ9H7M9 311 aa9.23□□□□□ -0.93
USP54-209ENST00000464635 GAR1Q9NY12 217 aaKnown RBP9.23□□□□□ -0.93
USP54-209ENST00000464635 CARHSP1Q9Y2V2 147 aaKnown RBP9.23□□□□□ -0.93
USP54-209ENST00000464635 MAP1LC3B2A6NCE7 125 aa9.22□□□□□ -0.93
USP54-209ENST00000464635 RBFOX3A6NFN3 312 aa9.22□□□□□ -0.93
USP54-209ENST00000464635 SCGB2A1O75556 95 aa9.22□□□□□ -0.93
USP54-209ENST00000464635 IGHG2P01859 326 aa9.22□□□□□ -0.93
USP54-209ENST00000464635 STAG3L2P0CL84 134 aa9.22□□□□□ -0.93
USP54-209ENST00000464635 STAG3L3P0CL85 134 aa9.22□□□□□ -0.93
USP54-209ENST00000464635 CD24P25063 80 aa9.22□□□□□ -0.93
USP54-209ENST00000464635 NPBWR1P48145 328 aa9.22□□□□□ -0.93
USP54-209ENST00000464635 CDC34P49427 236 aaPredicted RBP9.22□□□□□ -0.93
USP54-209ENST00000464635 ASPHD1Q5U4P2 390 aa9.22□□□□□ -0.93
USP54-209ENST00000464635 SLC35E3Q7Z769 313 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms