RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 ACSM6Q6P461 480 aa9.39□□□□□ -0.91
PTPRF-208ENST00000437607 FAM223AQ8IWN6 122 aa9.39□□□□□ -0.91
PTPRF-208ENST00000437607 CACNG8Q8WXS5 425 aa9.39□□□□□ -0.91
PTPRF-208ENST00000437607 DPF1Q92782 380 aa9.39□□□□□ -0.91
PTPRF-208ENST00000437607 ACY3Q96HD9 319 aa9.39□□□□□ -0.91
PTPRF-208ENST00000437607 DUX3Q96PT4 197 aa9.39□□□□□ -0.91
PTPRF-208ENST00000437607 GPR61Q9BZJ8 451 aa9.39□□□□□ -0.91
PTPRF-208ENST00000437607 SLA2Q9H6Q3 261 aa9.39□□□□□ -0.91
PTPRF-208ENST00000437607 FBXL7Q9UJT9 491 aa9.39□□□□□ -0.91
PTPRF-208ENST00000437607 IGHV3-21A0A0B4J1V1 117 aa9.38□□□□□ -0.91
PTPRF-208ENST00000437607 SOX15O60248 233 aa9.38□□□□□ -0.91
PTPRF-208ENST00000437607 JTBO76095 146 aa9.38□□□□□ -0.91
PTPRF-208ENST00000437607 TPT1P13693 172 aaKnown RBP9.38□□□□□ -0.91
PTPRF-208ENST00000437607 FGF7P21781 194 aa9.38□□□□□ -0.91
PTPRF-208ENST00000437607 PPIFP30405 207 aaKnown RBP9.38□□□□□ -0.91
PTPRF-208ENST00000437607 GPX4P36969 197 aaPredicted RBP9.38□□□□□ -0.91
PTPRF-208ENST00000437607 RND2P52198 227 aa9.38□□□□□ -0.91
PTPRF-208ENST00000437607 DEFA5Q01523 94 aa9.38□□□□□ -0.91
PTPRF-208ENST00000437607 CFHR3Q02985 330 aa9.38□□□□□ -0.91
PTPRF-208ENST00000437607 RPL7L1Q6DKI1 246 aaKnown RBP9.38□□□□□ -0.91
PTPRF-208ENST00000437607 SLC51BQ86UW2 128 aa9.38□□□□□ -0.91
PTPRF-208ENST00000437607 NECAP1Q8NC96 275 aa9.38□□□□□ -0.91
PTPRF-208ENST00000437607 SCGB1C1Q8TD33 95 aa9.38□□□□□ -0.91
PTPRF-208ENST00000437607 MS4A10Q96PG2 267 aa9.38□□□□□ -0.91
PTPRF-208ENST00000437607 FANCD2OSQ96PS1 177 aa9.38□□□□□ -0.91
PTPRF-208ENST00000437607 FNDC4Q9H6D8 234 aaPredicted RBP9.38□□□□□ -0.91
PTPRF-208ENST00000437607 BOLA1Q9Y3E2 137 aa9.38□□□□□ -0.91
PTPRF-208ENST00000437607 LSM4Q9Y4Z0 139 aaKnown RBP9.38□□□□□ -0.91
PTPRF-208ENST00000437607 DMRT1Q9Y5R6 373 aa9.38□□□□□ -0.91
PTPRF-208ENST00000437607 TENM2Q9NT68 2774 aa9.38□□□□□ -0.91
PTPRF-208ENST00000437607 I3L2K1 104 aa9.37□□□□□ -0.91
PTPRF-208ENST00000437607 K7EIM0 57 aa9.37□□□□□ -0.91
PTPRF-208ENST00000437607 IGHG4P01861 327 aa9.37□□□□□ -0.91
PTPRF-208ENST00000437607 MYCNOSP40205 109 aa9.37□□□□□ -0.91
PTPRF-208ENST00000437607 FOXE3Q13461 319 aa9.37□□□□□ -0.91
PTPRF-208ENST00000437607 VWC2Q2TAL6 325 aa9.37□□□□□ -0.91
PTPRF-208ENST00000437607 C15orf32Q32M92 178 aa9.37□□□□□ -0.91
PTPRF-208ENST00000437607 COMMD1Q8N668 190 aa9.37□□□□□ -0.91
PTPRF-208ENST00000437607 UBAC2Q8NBM4 344 aa9.37□□□□□ -0.91
PTPRF-208ENST00000437607 HSD17B11Q8NBQ5 300 aa9.37□□□□□ -0.91
PTPRF-208ENST00000437607 KLHL30-AS1Q8NEE0 82 aa9.37□□□□□ -0.91
PTPRF-208ENST00000437607 STOML3Q8TAV4 291 aa9.37□□□□□ -0.91
PTPRF-208ENST00000437607 EEF1AKMT3Q96AZ1 226 aa9.37□□□□□ -0.91
PTPRF-208ENST00000437607 RAX2Q96IS3 184 aa9.37□□□□□ -0.91
PTPRF-208ENST00000437607 CXorf58Q96LI9 332 aa9.37□□□□□ -0.91
PTPRF-208ENST00000437607 MCRIP2Q9BUT9 160 aaKnown RBP9.37□□□□□ -0.91
PTPRF-208ENST00000437607 WFDC1Q9HC57 220 aa9.37□□□□□ -0.91
PTPRF-208ENST00000437607 KCNIP2Q9NS61 270 aa9.37□□□□□ -0.91
PTPRF-208ENST00000437607 C21orf62Q9NYP8 219 aa9.37□□□□□ -0.91
PTPRF-208ENST00000437607 TRBV9A0A0B4J1U6 114 aa9.36□□□□□ -0.91
PTPRF-208ENST00000437607 MFSD2BA6NFX1 497 aa9.36□□□□□ -0.91
PTPRF-208ENST00000437607 NUDT19A8MXV4 375 aa9.36□□□□□ -0.91
PTPRF-208ENST00000437607 MPDU1O75352 247 aa9.36□□□□□ -0.91
PTPRF-208ENST00000437607 NDUFB8O95169 186 aa9.36□□□□□ -0.91
PTPRF-208ENST00000437607 BRI3O95415 125 aa9.36□□□□□ -0.91
PTPRF-208ENST00000437607 IGLV1-40P01703 118 aa9.36□□□□□ -0.91
PTPRF-208ENST00000437607 IGHV3-48P01763 117 aa9.36□□□□□ -0.91
PTPRF-208ENST00000437607 ELANEP08246 267 aa9.36□□□□□ -0.91
PTPRF-208ENST00000437607 NPBWR1P48145 328 aa9.36□□□□□ -0.91
PTPRF-208ENST00000437607 RAB31Q13636 194 aa9.36□□□□□ -0.91
PTPRF-208ENST00000437607 KLK9Q2XQG4 91 aa9.36□□□□□ -0.91
PTPRF-208ENST00000437607 Q56UQ5 140 aa9.36□□□□□ -0.91
PTPRF-208ENST00000437607 TEX38Q6PEX7 206 aa9.36□□□□□ -0.91
PTPRF-208ENST00000437607 TMEM144Q7Z5S9 345 aa9.36□□□□□ -0.91
PTPRF-208ENST00000437607 ZNF709Q8N972 641 aa9.36□□□□□ -0.91
PTPRF-208ENST00000437607 VN1R17PQ8TDU5 208 aa9.36□□□□□ -0.91
PTPRF-208ENST00000437607 PARD6GQ9BYG4 376 aaPredicted RBP9.36□□□□□ -0.91
PTPRF-208ENST00000437607 WDR61Q9GZS3 305 aaKnown RBP9.36□□□□□ -0.91
PTPRF-208ENST00000437607 NPVFQ9HCQ7 196 aa9.36□□□□□ -0.91
PTPRF-208ENST00000437607 KLK9Q9UKQ9 250 aa9.36□□□□□ -0.91
PTPRF-208ENST00000437607 WDR83OSQ9Y284 106 aa9.36□□□□□ -0.91
PTPRF-208ENST00000437607 U3KQK5 164 aa9.36□□□□□ -0.91
PTPRF-208ENST00000437607 A0A0G2JLM5 398 aa9.35□□□□□ -0.91
PTPRF-208ENST00000437607 ZFP92A6NM28 416 aa9.35□□□□□ -0.91
PTPRF-208ENST00000437607 C17orf112F2Z3M2 114 aa9.35□□□□□ -0.91
PTPRF-208ENST00000437607 GNG7O60262 68 aa9.35□□□□□ -0.91
PTPRF-208ENST00000437607 NHLRC4P0CG21 123 aaPredicted RBP9.35□□□□□ -0.91
PTPRF-208ENST00000437607 PSMB8P28062 276 aa9.35□□□□□ -0.91
PTPRF-208ENST00000437607 MFAP4P55083 255 aa9.35□□□□□ -0.91
PTPRF-208ENST00000437607 ATP5G2Q06055 141 aa9.35□□□□□ -0.91
PTPRF-208ENST00000437607 GAMTQ14353 236 aa9.35□□□□□ -0.91
PTPRF-208ENST00000437607 TEPPQ6URK8 271 aa9.35□□□□□ -0.91
PTPRF-208ENST00000437607 BTNL8Q6UX41 500 aa9.35□□□□□ -0.91
PTPRF-208ENST00000437607 TMEM116Q8NCL8 245 aa9.35□□□□□ -0.91
PTPRF-208ENST00000437607 OR4X1Q8NH49 305 aa9.35□□□□□ -0.91
PTPRF-208ENST00000437607 SCARB1Q8WTV0 552 aa9.35□□□□□ -0.91
PTPRF-208ENST00000437607 ST8SIA2Q92186 375 aa9.35□□□□□ -0.91
PTPRF-208ENST00000437607 NPIPB3Q92617 1050 aa9.35□□□□□ -0.91
PTPRF-208ENST00000437607 USMG5Q96IX5 58 aa9.35□□□□□ -0.91
PTPRF-208ENST00000437607 PRR25Q96S07 402 aa9.35□□□□□ -0.91
PTPRF-208ENST00000437607 CYTL1Q9NRR1 136 aa9.35□□□□□ -0.91
PTPRF-208ENST00000437607 GAR1Q9NY12 217 aaKnown RBP9.35□□□□□ -0.91
PTPRF-208ENST00000437607 S4R3C0 116 aa9.35□□□□□ -0.91
PTPRF-208ENST00000437607 HYDINQ4G0P3 5121 aa9.35□□□□□ -0.91
PTPRF-208ENST00000437607 TRBV7-1A0A0A6YYK4 115 aa9.34□□□□□ -0.91
PTPRF-208ENST00000437607 RPLP1P05386 114 aaKnown RBP9.34□□□□□ -0.91
PTPRF-208ENST00000437607 FABP1P07148 127 aa9.34□□□□□ -0.91
PTPRF-208ENST00000437607 OR10J1P30954 320 aa9.34□□□□□ -0.91
PTPRF-208ENST00000437607 RUNX1Q01196 453 aa9.34□□□□□ -0.91
PTPRF-208ENST00000437607 DEFB136Q30KP8 78 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms