RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 C8orf82Q6P1X6 216 aaPredicted RBP9.34□□□□□ -0.91
SCN4A-201ENST00000435607 APCDD1LQ8NCL9 501 aa9.34□□□□□ -0.91
SCN4A-201ENST00000435607 A0A0U1RRA0 63 aa9.33□□□□□ -0.92
SCN4A-201ENST00000435607 FAM223BA6NKX1 122 aa9.33□□□□□ -0.92
SCN4A-201ENST00000435607 GFI1BQ5VTD9 330 aa9.33□□□□□ -0.92
SCN4A-201ENST00000435607 FAM223AQ8IWN6 122 aa9.33□□□□□ -0.92
SCN4A-201ENST00000435607 H3BUX3 64 aa9.33□□□□□ -0.92
SCN4A-201ENST00000435607 PLXNA1Q9UIW2 1896 aa9.33□□□□□ -0.92
SCN4A-201ENST00000435607 F5H768 121 aa9.33□□□□□ -0.92
SCN4A-201ENST00000435607 LINC00477Q96M19 166 aa9.33□□□□□ -0.92
SCN4A-201ENST00000435607 LAMB2P55268 1798 aa9.33□□□□□ -0.92
SCN4A-201ENST00000435607 C17orf98A8MV24 154 aa9.33□□□□□ -0.92
SCN4A-201ENST00000435607 MGST2Q99735 147 aa9.33□□□□□ -0.92
SCN4A-201ENST00000435607 M0R1W7 72 aa9.33□□□□□ -0.92
SCN4A-201ENST00000435607 LAGE3Q14657 143 aa9.33□□□□□ -0.92
SCN4A-201ENST00000435607 C15orf32Q32M92 178 aa9.33□□□□□ -0.92
SCN4A-201ENST00000435607 ZNF876PQ49A33 203 aa9.33□□□□□ -0.92
SCN4A-201ENST00000435607 PSG8Q9UQ74 426 aa9.33□□□□□ -0.92
SCN4A-201ENST00000435607 A0A0G2JK05 382 aa9.33□□□□□ -0.92
SCN4A-201ENST00000435607 FAM90A2PQ658T7 463 aa9.33□□□□□ -0.92
SCN4A-201ENST00000435607 HLA-DQB1P01920 261 aa9.33□□□□□ -0.92
SCN4A-201ENST00000435607 ZNF660Q6AZW8 331 aaPredicted RBP9.33□□□□□ -0.92
SCN4A-201ENST00000435607 TM2D1Q9BX74 207 aa9.33□□□□□ -0.92
SCN4A-201ENST00000435607 SCO2A0A1W2PP80 73 aa9.32□□□□□ -0.92
SCN4A-201ENST00000435607 IFITM2Q01629 132 aa9.32□□□□□ -0.92
SCN4A-201ENST00000435607 TNRC6CQ9HCJ0 1690 aaKnown RBP9.32□□□□□ -0.92
SCN4A-201ENST00000435607 SDK2Q58EX2 2172 aa9.32□□□□□ -0.92
SCN4A-201ENST00000435607 H3BMM0 161 aa9.32□□□□□ -0.92
SCN4A-201ENST00000435607 SMIM10L1P0DMW3 83 aa9.32□□□□□ -0.92
SCN4A-201ENST00000435607 TMEM105Q8N8V8 129 aa9.32□□□□□ -0.92
SCN4A-201ENST00000435607 ST6GALNAC3Q8NDV1 305 aa9.32□□□□□ -0.92
SCN4A-201ENST00000435607 UBE2WQ96B02 151 aa9.32□□□□□ -0.92
SCN4A-201ENST00000435607 SMIM10Q96HG1 83 aa9.32□□□□□ -0.92
SCN4A-201ENST00000435607 TRPM3Q9HCF6 1732 aaPredicted RBP9.32□□□□□ -0.92
SCN4A-201ENST00000435607 NIT1Q86X76 327 aa9.32□□□□□ -0.92
SCN4A-201ENST00000435607 IMMP1LQ96LU5 166 aa9.32□□□□□ -0.92
SCN4A-201ENST00000435607 PDCD11Q14690 1871 aaKnown RBP9.32□□□□□ -0.92
SCN4A-201ENST00000435607 J3QKU1 62 aa9.32□□□□□ -0.92
SCN4A-201ENST00000435607 CD24P25063 80 aa9.32□□□□□ -0.92
SCN4A-201ENST00000435607 WFIKKN1Q96NZ8 548 aa9.32□□□□□ -0.92
SCN4A-201ENST00000435607 EPDR1Q9UM22 224 aa9.32□□□□□ -0.92
SCN4A-201ENST00000435607 KIAA2026Q5HYC2 2103 aa9.32□□□□□ -0.92
SCN4A-201ENST00000435607 AMELYQ99218 206 aa9.32□□□□□ -0.92
SCN4A-201ENST00000435607 ZNF407Q9C0G0 2248 aa9.32□□□□□ -0.92
SCN4A-201ENST00000435607 IGKCP01834 107 aa9.32□□□□□ -0.92
SCN4A-201ENST00000435607 RNF5Q99942 180 aa9.32□□□□□ -0.92
SCN4A-201ENST00000435607 EPOPA6NHQ4 379 aa9.31□□□□□ -0.92
SCN4A-201ENST00000435607 TMEM14DPA8MWL7 114 aa9.31□□□□□ -0.92
SCN4A-201ENST00000435607 TMEM219Q86XT9 240 aa9.31□□□□□ -0.92
SCN4A-201ENST00000435607 RCC1LQ96I51 464 aaKnown RBP9.31□□□□□ -0.92
SCN4A-201ENST00000435607 SMPXQ9UHP9 88 aa9.31□□□□□ -0.92
SCN4A-201ENST00000435607 TRBV5-3A0A0A0MS03 114 aa9.31□□□□□ -0.92
SCN4A-201ENST00000435607 A8MWV9 139 aa9.31□□□□□ -0.92
SCN4A-201ENST00000435607 RIPPLY3P57055 190 aa9.31□□□□□ -0.92
SCN4A-201ENST00000435607 GAGE2EQ4V326 116 aa9.31□□□□□ -0.92
SCN4A-201ENST00000435607 GAGE2DQ9UEU5 116 aa9.31□□□□□ -0.92
SCN4A-201ENST00000435607 FAM90A9PA6NNJ1 464 aa9.31□□□□□ -0.92
SCN4A-201ENST00000435607 VCYO14598 125 aa9.31□□□□□ -0.92
SCN4A-201ENST00000435607 LHX2P50458 406 aa9.31□□□□□ -0.92
SCN4A-201ENST00000435607 IGLV3-21P80748 117 aaPredicted RBP9.31□□□□□ -0.92
SCN4A-201ENST00000435607 MORN2Q502X0 79 aa9.31□□□□□ -0.92
SCN4A-201ENST00000435607 C9orf139Q6ZV77 190 aa9.31□□□□□ -0.92
SCN4A-201ENST00000435607 MIR17HGQ75NE6 70 aa9.31□□□□□ -0.92
SCN4A-201ENST00000435607 MBNL3Q9NUK0 354 aaKnown RBP9.31□□□□□ -0.92
SCN4A-201ENST00000435607 IGHV3-53P01767 116 aa9.31□□□□□ -0.92
SCN4A-201ENST00000435607 DEFB130BP0DP73 79 aa9.31□□□□□ -0.92
SCN4A-201ENST00000435607 DEFB130AP0DP74 79 aa9.31□□□□□ -0.92
SCN4A-201ENST00000435607 GATA4P43694 442 aa9.31□□□□□ -0.92
SCN4A-201ENST00000435607 SP5Q6BEB4 398 aaPredicted RBP9.31□□□□□ -0.92
SCN4A-201ENST00000435607 ZNF48Q96MX3 618 aaPredicted RBP9.31□□□□□ -0.92
SCN4A-201ENST00000435607 TEX48A0A1B0GUV7 120 aa9.31□□□□□ -0.92
SCN4A-201ENST00000435607 PATJQ8NI35 1801 aa9.31□□□□□ -0.92
SCN4A-201ENST00000435607 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.31□□□□□ -0.92
SCN4A-201ENST00000435607 MARF1Q9Y4F3 1742 aaKnown RBP9.31□□□□□ -0.92
SCN4A-201ENST00000435607 FUT5Q11128 374 aa9.3□□□□□ -0.92
SCN4A-201ENST00000435607 WFDC12Q8WWY7 111 aa9.3□□□□□ -0.92
SCN4A-201ENST00000435607 CTHRC1Q96CG8 243 aa9.3□□□□□ -0.92
SCN4A-201ENST00000435607 COL11A1P12107 1806 aaPredicted RBP9.3□□□□□ -0.92
SCN4A-201ENST00000435607 KIAA1551Q9HCM1 1747 aa9.3□□□□□ -0.92
SCN4A-201ENST00000435607 SRRM4A7MD48 611 aaKnown RBP9.3□□□□□ -0.92
SCN4A-201ENST00000435607 TFF3Q07654 80 aa9.3□□□□□ -0.92
SCN4A-201ENST00000435607 RFLNBQ8N5W9 214 aa9.3□□□□□ -0.92
SCN4A-201ENST00000435607 UBE2E2Q96LR5 201 aa9.3□□□□□ -0.92
SCN4A-201ENST00000435607 DOCK6Q96HP0 2047 aa9.3□□□□□ -0.92
SCN4A-201ENST00000435607 NPDC1Q9NQX5 325 aaPredicted RBP9.3□□□□□ -0.92
SCN4A-201ENST00000435607 ATP5L2Q7Z4Y8 100 aa9.3□□□□□ -0.92
SCN4A-201ENST00000435607 THAP8Q8NA92 274 aa9.3□□□□□ -0.92
SCN4A-201ENST00000435607 IGHV2-26A0A0B4J1V2 119 aa9.3□□□□□ -0.92
SCN4A-201ENST00000435607 MYMXA0A1B0GTQ4 84 aa9.3□□□□□ -0.92
SCN4A-201ENST00000435607 SIGLEC5O15389 551 aa9.3□□□□□ -0.92
SCN4A-201ENST00000435607 PLA2G10O15496 165 aa9.3□□□□□ -0.92
SCN4A-201ENST00000435607 DDTP30046 118 aa9.3□□□□□ -0.92
SCN4A-201ENST00000435607 IGHV3-64A0A075B6Q5 118 aa9.3□□□□□ -0.92
SCN4A-201ENST00000435607 IGHV3-73A0A0B4J1V6 119 aa9.3□□□□□ -0.92
SCN4A-201ENST00000435607 EIF4EBP2Q13542 120 aaPredicted RBP9.3□□□□□ -0.92
SCN4A-201ENST00000435607 C1orf159Q96HA4 380 aa9.3□□□□□ -0.92
SCN4A-201ENST00000435607 CELA3BP08861 270 aa9.29□□□□□ -0.92
SCN4A-201ENST00000435607 CITED2Q99967 270 aaPredicted RBP9.29□□□□□ -0.92
SCN4A-201ENST00000435607 PQLC2LA1A4F0 135 aa9.29□□□□□ -0.92
SCN4A-201ENST00000435607 EVI2AP22794 236 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms