RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 GTSCR1Q86UQ5 136 aa14.07□□□□□ -0.16
SHH-203ENST00000435425 TMEM61Q8N0U2 210 aa14.07□□□□□ -0.16
SHH-203ENST00000435425 ZBTB8BQ8NAP8 495 aaPredicted RBP14.07□□□□□ -0.16
SHH-203ENST00000435425 PRKDCP78527 4128 aaKnown RBP14.06□□□□□ -0.16
SHH-203ENST00000435425 IGHV3OR16-13A0A075B7E8 117 aa14.06□□□□□ -0.16
SHH-203ENST00000435425 IGHV3-74A0A0B4J1X5 117 aa14.06□□□□□ -0.16
SHH-203ENST00000435425 C5orf51A6NDU8 294 aa14.06□□□□□ -0.16
SHH-203ENST00000435425 SSSCA1O60232 199 aa14.06□□□□□ -0.16
SHH-203ENST00000435425 ATP5IP56385 69 aaPredicted RBP14.06□□□□□ -0.16
SHH-203ENST00000435425 RBPMS2Q6ZRY4 209 aaKnown RBP14.06□□□□□ -0.16
SHH-203ENST00000435425 Q8N1Y9 231 aa14.06□□□□□ -0.16
SHH-203ENST00000435425 SMPXQ9UHP9 88 aa14.06□□□□□ -0.16
SHH-203ENST00000435425 TRAV14DV4A0A0A6YYC5 116 aa14.05□□□□□ -0.16
SHH-203ENST00000435425 IGHV7-4-1A0A0J9YVY3 117 aa14.05□□□□□ -0.16
SHH-203ENST00000435425 IL5P05113 134 aa14.05□□□□□ -0.16
SHH-203ENST00000435425 OR10J1P30954 320 aa14.05□□□□□ -0.16
SHH-203ENST00000435425 CD81P60033 236 aa14.05□□□□□ -0.16
SHH-203ENST00000435425 TMEM116Q8NCL8 245 aa14.05□□□□□ -0.16
SHH-203ENST00000435425 OR1S2Q8NGQ3 325 aa14.05□□□□□ -0.16
SHH-203ENST00000435425 SLC35E1Q96K37 410 aa14.05□□□□□ -0.16
SHH-203ENST00000435425 ASCL2Q99929 193 aa14.05□□□□□ -0.16
SHH-203ENST00000435425 GINS3Q9BRX5 216 aa14.05□□□□□ -0.16
SHH-203ENST00000435425 ZFAND3Q9H8U3 227 aa14.05□□□□□ -0.16
SHH-203ENST00000435425 PSENENQ9NZ42 101 aa14.05□□□□□ -0.16
SHH-203ENST00000435425 INMT-MINDY4F8WBC2 141 aa14.04□□□□□ -0.16
SHH-203ENST00000435425 IGKV1-17P01599 117 aa14.04□□□□□ -0.16
SHH-203ENST00000435425 CD7P09564 240 aa14.04□□□□□ -0.16
SHH-203ENST00000435425 IGLC1P0CG04 106 aa14.04□□□□□ -0.16
SHH-203ENST00000435425 B9D2Q9BPU9 175 aa14.04□□□□□ -0.16
SHH-203ENST00000435425 NEURL2Q9BR09 285 aa14.04□□□□□ -0.16
SHH-203ENST00000435425 RHPN1-AS1Q9BWJ2 59 aa14.04□□□□□ -0.16
SHH-203ENST00000435425 GPN1Q9HCN4 374 aaPredicted RBP14.04□□□□□ -0.16
SHH-203ENST00000435425 STRAPQ9Y3F4 350 aaKnown RBP14.04□□□□□ -0.16
SHH-203ENST00000435425 IGHV3-66A0A0C4DH42 116 aa14.03□□□□□ -0.16
SHH-203ENST00000435425 CHEK1O14757 476 aa14.03□□□□□ -0.16
SHH-203ENST00000435425 GPX4P36969 197 aaPredicted RBP14.03□□□□□ -0.16
SHH-203ENST00000435425 GAMTQ14353 236 aa14.03□□□□□ -0.16
SHH-203ENST00000435425 Q8WTZ3 238 aa14.03□□□□□ -0.16
SHH-203ENST00000435425 APOHP02749 345 aaPredicted RBP14.02□□□□□ -0.17
SHH-203ENST00000435425 FRMD6-AS1P0C7T7 363 aa14.02□□□□□ -0.17
SHH-203ENST00000435425 IGHV4-30-4P0DP06 118 aa14.02□□□□□ -0.17
SHH-203ENST00000435425 LAMTOR1Q6IAA8 161 aa14.02□□□□□ -0.17
SHH-203ENST00000435425 GSG1LQ6UXU4 331 aa14.02□□□□□ -0.17
SHH-203ENST00000435425 RNF2Q99496 336 aa14.02□□□□□ -0.17
SHH-203ENST00000435425 RCL1Q9Y2P8 373 aaKnown RBP14.02□□□□□ -0.17
SHH-203ENST00000435425 LSM5Q9Y4Y9 91 aaKnown RBP14.02□□□□□ -0.17
SHH-203ENST00000435425 IGKV3-7A0A075B6H7 116 aa14.01□□□□□ -0.17
SHH-203ENST00000435425 TRAV25A0A0B4J276 109 aa14.01□□□□□ -0.17
SHH-203ENST00000435425 ZFP92A6NM28 416 aa14.01□□□□□ -0.17
SHH-203ENST00000435425 MBPP02686 304 aaPredicted RBP14.01□□□□□ -0.17
SHH-203ENST00000435425 NPPCP23582 126 aa14.01□□□□□ -0.17
SHH-203ENST00000435425 YPEL3P61236 119 aaPredicted RBP14.01□□□□□ -0.17
SHH-203ENST00000435425 ST8SIA2Q92186 375 aa14.01□□□□□ -0.17
SHH-203ENST00000435425 SMIM8Q96KF7 97 aa14.01□□□□□ -0.17
SHH-203ENST00000435425 C2orf50Q96LR7 162 aa14.01□□□□□ -0.17
SHH-203ENST00000435425 TUBA4BQ9H853 241 aa14.01□□□□□ -0.17
SHH-203ENST00000435425 PAX9P55771 341 aa14□□□□□ -0.17
SHH-203ENST00000435425 OR8G2PQ6IF36 304 aa14□□□□□ -0.17
SHH-203ENST00000435425 METTL26Q96S19 204 aa14□□□□□ -0.17
SHH-203ENST00000435425 RAB40CQ96S21 281 aa14□□□□□ -0.17
SHH-203ENST00000435425 WFDC10AQ9H1F0 79 aa14□□□□□ -0.17
SHH-203ENST00000435425 TGP01266 2768 aa13.99□□□□□ -0.17
SHH-203ENST00000435425 L7N2F9 121 aa13.99□□□□□ -0.17
SHH-203ENST00000435425 PRAF2O60831 178 aa13.99□□□□□ -0.17
SHH-203ENST00000435425 CCNKO75909 580 aa13.99□□□□□ -0.17
SHH-203ENST00000435425 TOMM40O96008 361 aa13.99□□□□□ -0.17
SHH-203ENST00000435425 IL4P05112 153 aa13.99□□□□□ -0.17
SHH-203ENST00000435425 RD3LP0DJH9 198 aa13.99□□□□□ -0.17
SHH-203ENST00000435425 VAMP2P63027 116 aa13.99□□□□□ -0.17
SHH-203ENST00000435425 DEFB125Q8N687 156 aa13.99□□□□□ -0.17
SHH-203ENST00000435425 MARVELD1Q9BSK0 173 aa13.99□□□□□ -0.17
SHH-203ENST00000435425 OR11H12B2RN74 326 aa13.98□□□□□ -0.17
SHH-203ENST00000435425 PRSS46E5RG02 174 aa13.98□□□□□ -0.17
SHH-203ENST00000435425 K7EPK0 472 aa13.98□□□□□ -0.17
SHH-203ENST00000435425 GOSR2O14653 212 aa13.98□□□□□ -0.17
SHH-203ENST00000435425 TSPAN4O14817 238 aa13.98□□□□□ -0.17
SHH-203ENST00000435425 SIX6O95475 246 aa13.98□□□□□ -0.17
SHH-203ENST00000435425 METTL15P1P0C7V9 234 aa13.98□□□□□ -0.17
SHH-203ENST00000435425 PSG1P11464 419 aa13.98□□□□□ -0.17
SHH-203ENST00000435425 BMI1P35226 326 aa13.98□□□□□ -0.17
SHH-203ENST00000435425 TFPI2P48307 235 aa13.98□□□□□ -0.17
SHH-203ENST00000435425 S100A10P60903 97 aa13.98□□□□□ -0.17
SHH-203ENST00000435425 ZNF90Q03938 601 aa13.98□□□□□ -0.17
SHH-203ENST00000435425 TCF24Q7RTU0 167 aa13.98□□□□□ -0.17
SHH-203ENST00000435425 SBSPONQ8IVN8 264 aa13.98□□□□□ -0.17
SHH-203ENST00000435425 LILRB2Q8N423 598 aa13.98□□□□□ -0.17
SHH-203ENST00000435425 GBGT1Q8N5D6 347 aa13.98□□□□□ -0.17
SHH-203ENST00000435425 SPAG8Q99932 426 aaPredicted RBP13.98□□□□□ -0.17
SHH-203ENST00000435425 UBQLN2Q9UHD9 624 aa13.98□□□□□ -0.17
SHH-203ENST00000435425 IGKV1D-37A0A075B6S9 117 aa13.97□□□□□ -0.17
SHH-203ENST00000435425 SMCO3A2RU48 225 aa13.97□□□□□ -0.17
SHH-203ENST00000435425 C7orf66A4D0T2 115 aa13.97□□□□□ -0.17
SHH-203ENST00000435425 SNRPGP15A8MWD9 76 aa13.97□□□□□ -0.17
SHH-203ENST00000435425 BCAP31P51572 246 aa13.97□□□□□ -0.17
SHH-203ENST00000435425 RPL11P62913 178 aaKnown RBP13.97□□□□□ -0.17
SHH-203ENST00000435425 AKR1C1Q04828 323 aa13.97□□□□□ -0.17
SHH-203ENST00000435425 OR2F1Q13607 317 aa13.97□□□□□ -0.17
SHH-203ENST00000435425 ACOT7LQ6ZUV0 252 aa13.97□□□□□ -0.17
SHH-203ENST00000435425 OR51G1Q8NGK1 321 aa13.97□□□□□ -0.17
SHH-203ENST00000435425 NARS2Q96I59 477 aaKnown RBP13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms