RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 SLAQ13239 276 aa10.87□□□□□ -0.67
COL6A3-206ENST00000409809 AZU1P20160 251 aa10.87□□□□□ -0.67
COL6A3-206ENST00000409809 LYPD1Q8N2G4 141 aa10.87□□□□□ -0.67
COL6A3-206ENST00000409809 PRTN3P24158 256 aa10.87□□□□□ -0.67
COL6A3-206ENST00000409809 DUTP33316 252 aaKnown RBP10.87□□□□□ -0.67
COL6A3-206ENST00000409809 PSG4Q00888 419 aa10.87□□□□□ -0.67
COL6A3-206ENST00000409809 PILRBQ9UKJ0 227 aa10.87□□□□□ -0.67
COL6A3-206ENST00000409809 ADAMTSL1Q8N6G6 1762 aa10.86□□□□□ -0.67
COL6A3-206ENST00000409809 IGHV5-51A0A0C4DH38 117 aa10.86□□□□□ -0.67
COL6A3-206ENST00000409809 M0R381 172 aa10.86□□□□□ -0.67
COL6A3-206ENST00000409809 COL9A1P20849 921 aa10.86□□□□□ -0.67
COL6A3-206ENST00000409809 C3AR1Q16581 482 aa10.86□□□□□ -0.67
COL6A3-206ENST00000409809 IQCF6A8MYZ5 107 aa10.86□□□□□ -0.67
COL6A3-206ENST00000409809 SHISA8B8ZZ34 492 aa10.86□□□□□ -0.67
COL6A3-206ENST00000409809 ID3Q02535 119 aa10.86□□□□□ -0.67
COL6A3-206ENST00000409809 PPP1R27Q86WC6 154 aa10.86□□□□□ -0.67
COL6A3-206ENST00000409809 C9orf40Q8IXQ3 194 aa10.86□□□□□ -0.67
COL6A3-206ENST00000409809 TDGF1P13385 188 aa10.86□□□□□ -0.67
COL6A3-206ENST00000409809 SPANXB1Q9NS25 103 aaPredicted RBP10.86□□□□□ -0.67
COL6A3-206ENST00000409809 R4GN57 208 aa10.86□□□□□ -0.67
COL6A3-206ENST00000409809 J3KRW8 73 aa10.86□□□□□ -0.67
COL6A3-206ENST00000409809 TFF3Q07654 80 aa10.86□□□□□ -0.67
COL6A3-206ENST00000409809 NPIPB3Q92617 1050 aa10.86□□□□□ -0.67
COL6A3-206ENST00000409809 MESP1Q9BRJ9 268 aa10.86□□□□□ -0.67
COL6A3-206ENST00000409809 A0A1W2PPM0 123 aa10.86□□□□□ -0.67
COL6A3-206ENST00000409809 UBL5Q9BZL1 73 aa10.86□□□□□ -0.67
COL6A3-206ENST00000409809 A0A1W2PQF6 199 aa10.85□□□□□ -0.67
COL6A3-206ENST00000409809 A0A087X0K7 114 aa10.85□□□□□ -0.67
COL6A3-206ENST00000409809 ZNHIT1O43257 154 aa10.85□□□□□ -0.67
COL6A3-206ENST00000409809 GFRA3O60609 400 aa10.85□□□□□ -0.67
COL6A3-206ENST00000409809 HCP5Q6MZN7 132 aa10.85□□□□□ -0.67
COL6A3-206ENST00000409809 SOCS3O14543 225 aa10.85□□□□□ -0.67
COL6A3-206ENST00000409809 C3orf79P0CE67 100 aa10.85□□□□□ -0.67
COL6A3-206ENST00000409809 EVI2AP22794 236 aa10.85□□□□□ -0.67
COL6A3-206ENST00000409809 SRSF3P84103 164 aaKnown RBP10.85□□□□□ -0.67
COL6A3-206ENST00000409809 LHX9Q9NQ69 397 aa10.85□□□□□ -0.67
COL6A3-206ENST00000409809 ALPK3Q96L96 1907 aa10.85□□□□□ -0.67
COL6A3-206ENST00000409809 SMIM20Q8N5G0 67 aa10.85□□□□□ -0.67
COL6A3-206ENST00000409809 OCC1Q8TAD7 63 aa10.85□□□□□ -0.67
COL6A3-206ENST00000409809 A0A1W2PPV9 198 aa10.85□□□□□ -0.67
COL6A3-206ENST00000409809 TMEM42Q69YG0 159 aa10.85□□□□□ -0.67
COL6A3-206ENST00000409809 FZR1Q9UM11 496 aa10.85□□□□□ -0.67
COL6A3-206ENST00000409809 IGHV3-13P01766 116 aa10.84□□□□□ -0.67
COL6A3-206ENST00000409809 IGHV3-7P01780 117 aa10.84□□□□□ -0.67
COL6A3-206ENST00000409809 MYOD1P15172 320 aa10.84□□□□□ -0.67
COL6A3-206ENST00000409809 MYMXA0A1B0GTQ4 84 aa10.84□□□□□ -0.67
COL6A3-206ENST00000409809 IGHV2-5P01817 119 aa10.84□□□□□ -0.67
COL6A3-206ENST00000409809 EFNB3Q15768 340 aa10.84□□□□□ -0.67
COL6A3-206ENST00000409809 CSRP3P50461 194 aa10.84□□□□□ -0.67
COL6A3-206ENST00000409809 PRSS41Q7RTY9 318 aa10.84□□□□□ -0.67
COL6A3-206ENST00000409809 HLA-DMBP28068 263 aa10.84□□□□□ -0.67
COL6A3-206ENST00000409809 PDE6HQ13956 83 aa10.84□□□□□ -0.67
COL6A3-206ENST00000409809 TMEM240Q5SV17 173 aa10.84□□□□□ -0.67
COL6A3-206ENST00000409809 BHLHA9Q7RTU4 235 aa10.84□□□□□ -0.67
COL6A3-206ENST00000409809 TRGV11A0A075B6L2 103 aa10.84□□□□□ -0.67
COL6A3-206ENST00000409809 EREGO14944 169 aa10.84□□□□□ -0.67
COL6A3-206ENST00000409809 DTX2Q86UW9 622 aa10.83□□□□□ -0.68
COL6A3-206ENST00000409809 H3BQ85 93 aa10.83□□□□□ -0.68
COL6A3-206ENST00000409809 IGFBP2P18065 325 aa10.83□□□□□ -0.68
COL6A3-206ENST00000409809 POLR3KQ9Y2Y1 108 aaPredicted RBP10.83□□□□□ -0.68
COL6A3-206ENST00000409809 CCL1P22362 96 aa10.83□□□□□ -0.68
COL6A3-206ENST00000409809 NCOA6Q14686 2063 aaPredicted RBP10.83□□□□□ -0.68
COL6A3-206ENST00000409809 COX8AP10176 69 aa10.83□□□□□ -0.68
COL6A3-206ENST00000409809 CCL7P80098 99 aa10.83□□□□□ -0.68
COL6A3-206ENST00000409809 ABHD12Q8N2K0 398 aa10.83□□□□□ -0.68
COL6A3-206ENST00000409809 IGHV2-26A0A0B4J1V2 119 aa10.82□□□□□ -0.68
COL6A3-206ENST00000409809 TMEM229AB2RXF0 380 aa10.82□□□□□ -0.68
COL6A3-206ENST00000409809 EGR4Q05215 589 aa10.82□□□□□ -0.68
COL6A3-206ENST00000409809 TSSC4Q9Y5U2 329 aaPredicted RBP10.82□□□□□ -0.68
COL6A3-206ENST00000409809 RLFQ13129 1914 aa10.82□□□□□ -0.68
COL6A3-206ENST00000409809 ANAPC1Q9H1A4 1944 aa10.82□□□□□ -0.68
COL6A3-206ENST00000409809 TRGV8A0A0C4DH27 118 aa10.82□□□□□ -0.68
COL6A3-206ENST00000409809 C16orf97H3BN30 126 aa10.82□□□□□ -0.68
COL6A3-206ENST00000409809 TGFAP01135 160 aa10.82□□□□□ -0.68
COL6A3-206ENST00000409809 TEX43Q6ZNM6 134 aa10.82□□□□□ -0.68
COL6A3-206ENST00000409809 SPATA25Q9BR10 227 aa10.82□□□□□ -0.68
COL6A3-206ENST00000409809 THSD7AQ9UPZ6 1657 aa10.82□□□□□ -0.68
COL6A3-206ENST00000409809 GREM1O60565 184 aa10.82□□□□□ -0.68
COL6A3-206ENST00000409809 SLC25A53Q5H9E4 307 aa10.82□□□□□ -0.68
COL6A3-206ENST00000409809 K7EMI3 77 aa10.82□□□□□ -0.68
COL6A3-206ENST00000409809 CD28P10747 220 aa10.82□□□□□ -0.68
COL6A3-206ENST00000409809 FAM89BQ8N5H3 189 aa10.82□□□□□ -0.68
COL6A3-206ENST00000409809 KLF2Q9Y5W3 355 aaPredicted RBP10.81□□□□□ -0.68
COL6A3-206ENST00000409809 IGHV2-70DA0A0C4DH43 119 aa10.81□□□□□ -0.68
COL6A3-206ENST00000409809 C9JAW5 83 aa10.81□□□□□ -0.68
COL6A3-206ENST00000409809 ATOX1O00244 68 aa10.81□□□□□ -0.68
COL6A3-206ENST00000409809 CLEC2AQ6UVW9 174 aa10.81□□□□□ -0.68
COL6A3-206ENST00000409809 IGHV2OR16-5A0A0B4J2B6 119 aa10.81□□□□□ -0.68
COL6A3-206ENST00000409809 YPEL1O60688 119 aa10.81□□□□□ -0.68
COL6A3-206ENST00000409809 IGLC2P0DOY2 106 aa10.81□□□□□ -0.68
COL6A3-206ENST00000409809 IGLC3P0DOY3 106 aa10.81□□□□□ -0.68
COL6A3-206ENST00000409809 HOXD3P31249 432 aaPredicted RBP10.81□□□□□ -0.68
COL6A3-206ENST00000409809 GUSBP11Q6P575 273 aa10.81□□□□□ -0.68
COL6A3-206ENST00000409809 C8orf46Q8TAG6 207 aa10.81□□□□□ -0.68
COL6A3-206ENST00000409809 YPEL2Q96QA6 119 aa10.81□□□□□ -0.68
COL6A3-206ENST00000409809 TMEM54Q969K7 222 aa10.81□□□□□ -0.68
COL6A3-206ENST00000409809 SCARF2Q96GP6 870 aaPredicted RBP10.81□□□□□ -0.68
COL6A3-206ENST00000409809 RBMY1FQ15415 496 aaKnown RBP10.81□□□□□ -0.68
COL6A3-206ENST00000409809 C21orf62Q9NYP8 219 aa10.81□□□□□ -0.68
COL6A3-206ENST00000409809 PATE4P0C8F1 98 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms