RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 RNASE7Q9H1E1 156 aaKnown RBP6.61□□□□□ -1.35
SYNE1-210ENST00000409694 IGLV1-36A0A0B4J1U3 117 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 BOD1L2Q8IYS8 172 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 EGR2P11161 476 aaPredicted RBP6.61□□□□□ -1.35
SYNE1-210ENST00000409694 CD200R1LQ6Q8B3 271 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 BHLHA9Q7RTU4 235 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 A0A1W2PPV9 198 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 PCOLCEQ15113 449 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 ZNF124Q15973 351 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 FBXL15Q9H469 300 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 TRBV7-1A0A0A6YYK4 115 aa6.6□□□□□ -1.35
SYNE1-210ENST00000409694 EVI2AP22794 236 aa6.6□□□□□ -1.35
SYNE1-210ENST00000409694 RPL23P62829 140 aaKnown RBP6.6□□□□□ -1.35
SYNE1-210ENST00000409694 PAX8Q06710 450 aa6.6□□□□□ -1.35
SYNE1-210ENST00000409694 RMI2Q96E14 147 aa6.6□□□□□ -1.35
SYNE1-210ENST00000409694 IL18BPO95998 194 aa6.6□□□□□ -1.35
SYNE1-210ENST00000409694 MIR17HGQ75NE6 70 aa6.6□□□□□ -1.35
SYNE1-210ENST00000409694 ZNF501Q96CX3 271 aaPredicted RBP6.6□□□□□ -1.35
SYNE1-210ENST00000409694 ZIC3O60481 467 aa6.6□□□□□ -1.35
SYNE1-210ENST00000409694 SPSB3Q6PJ21 355 aa6.6□□□□□ -1.35
SYNE1-210ENST00000409694 FDCSPQ8NFU4 85 aa6.6□□□□□ -1.35
SYNE1-210ENST00000409694 PTPRZ1P23471 2315 aaPredicted RBP6.6□□□□□ -1.35
SYNE1-210ENST00000409694 TMEM14DPA8MWL7 114 aa6.6□□□□□ -1.35
SYNE1-210ENST00000409694 ERVH48-1M5A8F1 160 aa6.6□□□□□ -1.35
SYNE1-210ENST00000409694 YPEL1O60688 119 aa6.6□□□□□ -1.35
SYNE1-210ENST00000409694 YPEL2Q96QA6 119 aa6.6□□□□□ -1.35
SYNE1-210ENST00000409694 IGHG3P01860 377 aa6.6□□□□□ -1.35
SYNE1-210ENST00000409694 IGHV3-64A0A075B6Q5 118 aa6.6□□□□□ -1.35
SYNE1-210ENST00000409694 TRAV8-3A0A0A6YYJ7 113 aa6.6□□□□□ -1.35
SYNE1-210ENST00000409694 IGKV1D-16P01601 117 aa6.6□□□□□ -1.35
SYNE1-210ENST00000409694 CD300EQ496F6 205 aaPredicted RBP6.6□□□□□ -1.35
SYNE1-210ENST00000409694 BCL6BQ8N143 479 aaPredicted RBP6.6□□□□□ -1.35
SYNE1-210ENST00000409694 OR9G9P0C7N8 305 aa6.6□□□□□ -1.35
SYNE1-210ENST00000409694 PRCDQ00LT1 54 aa6.6□□□□□ -1.35
SYNE1-210ENST00000409694 MSGN1A6NI15 193 aa6.59□□□□□ -1.35
SYNE1-210ENST00000409694 STPG1Q5TH74 334 aa6.59□□□□□ -1.35
SYNE1-210ENST00000409694 RPUSD1Q9UJJ7 312 aaKnown RBP6.59□□□□□ -1.35
SYNE1-210ENST00000409694 DOCK8Q8NF50 2099 aa6.59□□□□□ -1.35
SYNE1-210ENST00000409694 NYNRINQ9P2P1 1898 aaKnown RBP6.59□□□□□ -1.35
SYNE1-210ENST00000409694 BRCA1P38398 1863 aaKnown RBP6.59□□□□□ -1.35
SYNE1-210ENST00000409694 A0A1W2PRX2 142 aa6.59□□□□□ -1.35
SYNE1-210ENST00000409694 H3BQ85 93 aa6.59□□□□□ -1.35
SYNE1-210ENST00000409694 BSPH1Q075Z2 132 aa6.59□□□□□ -1.35
SYNE1-210ENST00000409694 RFLNBQ8N5W9 214 aa6.59□□□□□ -1.35
SYNE1-210ENST00000409694 SLC25A28Q96A46 364 aa6.59□□□□□ -1.35
SYNE1-210ENST00000409694 IGHV3-49A0A0A0MS15 119 aa6.59□□□□□ -1.35
SYNE1-210ENST00000409694 TRAV41A0A0B4J266 112 aa6.59□□□□□ -1.35
SYNE1-210ENST00000409694 C18orf12Q96KH6 178 aa6.59□□□□□ -1.35
SYNE1-210ENST00000409694 C7orf69Q9H7B7 122 aa6.59□□□□□ -1.35
SYNE1-210ENST00000409694 PSG8Q9UQ74 426 aa6.59□□□□□ -1.35
SYNE1-210ENST00000409694 NHSL1Q5SYE7 1610 aa6.59□□□□□ -1.35
SYNE1-210ENST00000409694 FAM181AQ8N9Y4 354 aa6.59□□□□□ -1.35
SYNE1-210ENST00000409694 PILRAQ9UKJ1 303 aa6.59□□□□□ -1.35
SYNE1-210ENST00000409694 IGHV3OR16-13A0A075B7E8 117 aa6.59□□□□□ -1.35
SYNE1-210ENST00000409694 IGHV3-74A0A0B4J1X5 117 aa6.59□□□□□ -1.35
SYNE1-210ENST00000409694 PRR19A6NJB7 356 aa6.59□□□□□ -1.35
SYNE1-210ENST00000409694 ATP5G3P48201 142 aa6.59□□□□□ -1.35
SYNE1-210ENST00000409694 MUC21Q5SSG8 566 aa6.59□□□□□ -1.35
SYNE1-210ENST00000409694 LINC00477Q96M19 166 aa6.59□□□□□ -1.36
SYNE1-210ENST00000409694 SAA2-SAA4A0A096LPE2 208 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 MMP23AO75900 390 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 SAA2P0DJI9 122 aaPredicted RBP6.58□□□□□ -1.36
SYNE1-210ENST00000409694 FOXL1Q12952 345 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 CHCHD2P9Q5T1J5 151 aaPredicted RBP6.58□□□□□ -1.36
SYNE1-210ENST00000409694 THAP8Q8NA92 274 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 CHKB-CPT1BH3BT56 60 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 HIST1H2BKO60814 126 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 IGHV3-48P01763 117 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 HIST1H2BJP06899 126 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 IGFBP3P17936 291 aaPredicted RBP6.58□□□□□ -1.36
SYNE1-210ENST00000409694 HIST1H2BOP23527 126 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 HIST1H2BBP33778 126 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 HIST1H2BDP58876 126 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 HIST1H2BCP62807 126 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 HIST2H2BEQ16778 126 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.58□□□□□ -1.36
SYNE1-210ENST00000409694 HIST1H2BHQ93079 126 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 TMEM141Q96I45 108 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 HIST1H2BNQ99877 126 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 HIST1H2BMQ99879 126 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 ZNF561-AS1K7EIQ3 104 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 WNT2P09544 360 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 NPC2P61916 151 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 POU2AF1Q16633 256 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 METRNQ9UJH8 293 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 COX6A1P12074 109 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 LY6G5BQ8NDX9 201 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 GFRA4Q9GZZ7 299 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 AKAP6Q13023 2319 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 MUC21A0A0G2JKD1 596 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 MUC21A0A140T8X8 626 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 A0A1B0GW64 132 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 FOXS1O43638 330 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 C1orf53Q5VUE5 145 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 ZNF114Q8NC26 417 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 MRPL27Q9P0M9 148 aaKnown RBP6.58□□□□□ -1.36
SYNE1-210ENST00000409694 UBE2V1Q13404 147 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 GUSBP1Q15486 140 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 SRSF7Q16629 238 aaKnown RBP eCLIP6.58□□□□□ -1.36
SYNE1-210ENST00000409694 A0A1W2PQF6 199 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms