RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 OR8B2Q96RD0 313 aa16.98■□□□□ 0.31
CTCF-202ENST00000401394 TRBV9A0A0B4J1U6 114 aa16.97■□□□□ 0.31
CTCF-202ENST00000401394 hDV102S1A0JD36 115 aa16.97■□□□□ 0.31
CTCF-202ENST00000401394 HLA-DQA1P01909 254 aa16.97■□□□□ 0.31
CTCF-202ENST00000401394 PSMB11A5LHX3 300 aa16.97■□□□□ 0.31
CTCF-202ENST00000401394 RELQ04864 619 aaPredicted RBP16.97■□□□□ 0.31
CTCF-202ENST00000401394 LINC00614P0C842 121 aa16.96■□□□□ 0.31
CTCF-202ENST00000401394 CD69Q07108 199 aa16.96■□□□□ 0.31
CTCF-202ENST00000401394 CR1LQ2VPA4 569 aa16.96■□□□□ 0.31
CTCF-202ENST00000401394 HCP5Q6MZN7 132 aa16.96■□□□□ 0.31
CTCF-202ENST00000401394 MBD6Q96DN6 1003 aa16.96■□□□□ 0.31
CTCF-202ENST00000401394 SLC25A15Q9Y619 301 aa16.96■□□□□ 0.31
CTCF-202ENST00000401394 FCN3O75636 299 aa16.96■□□□□ 0.31
CTCF-202ENST00000401394 MT-ND6P03923 174 aa16.96■□□□□ 0.31
CTCF-202ENST00000401394 ZNF329Q86UD4 541 aa16.96■□□□□ 0.31
CTCF-202ENST00000401394 PPP1R35Q8TAP8 253 aa16.96■□□□□ 0.31
CTCF-202ENST00000401394 HARBI1Q96MB7 349 aa16.96■□□□□ 0.31
CTCF-202ENST00000401394 CGB1A6NKQ9 187 aa16.95■□□□□ 0.3
CTCF-202ENST00000401394 LHBP01229 141 aa16.95■□□□□ 0.3
CTCF-202ENST00000401394 GAFA1Q96PS6 74 aa16.95■□□□□ 0.3
CTCF-202ENST00000401394 CHODLQ9H9P2 273 aa16.95■□□□□ 0.3
CTCF-202ENST00000401394 TRAV8-1A0A0A6YYK1 113 aa16.95■□□□□ 0.3
CTCF-202ENST00000401394 C20orf202A1L168 122 aa16.95■□□□□ 0.3
CTCF-202ENST00000401394 TCTAP57738 103 aa16.95■□□□□ 0.3
CTCF-202ENST00000401394 ZNF474Q6S9Z5 364 aaPredicted RBP16.95■□□□□ 0.3
CTCF-202ENST00000401394 PAXXQ9BUH6 204 aa16.95■□□□□ 0.3
CTCF-202ENST00000401394 PRNDQ9UKY0 176 aa16.95■□□□□ 0.3
CTCF-202ENST00000401394 RNF24Q9Y225 148 aa16.95■□□□□ 0.3
CTCF-202ENST00000401394 RIF1Q5UIP0 2472 aaKnown RBP16.94■□□□□ 0.3
CTCF-202ENST00000401394 COX7A2P2O60397 106 aa16.94■□□□□ 0.3
CTCF-202ENST00000401394 CEACAM8P31997 349 aaPredicted RBP16.94■□□□□ 0.3
CTCF-202ENST00000401394 ALKBH7Q9BT30 221 aaPredicted RBP16.94■□□□□ 0.3
CTCF-202ENST00000401394 C2orf70A6NJV1 201 aa16.94■□□□□ 0.3
CTCF-202ENST00000401394 KLF3P57682 345 aaPredicted RBP16.94■□□□□ 0.3
CTCF-202ENST00000401394 SELENOVP59797 346 aa16.94■□□□□ 0.3
CTCF-202ENST00000401394 TBR1Q16650 682 aa16.94■□□□□ 0.3
CTCF-202ENST00000401394 A0A1W2PRE2 83 aa16.93■□□□□ 0.3
CTCF-202ENST00000401394 PEX7O00628 323 aa16.93■□□□□ 0.3
CTCF-202ENST00000401394 CA7P43166 264 aa16.93■□□□□ 0.3
CTCF-202ENST00000401394 KIR2DS2P43631 304 aa16.93■□□□□ 0.3
CTCF-202ENST00000401394 PGLYRP4Q96LB8 373 aa16.93■□□□□ 0.3
CTCF-202ENST00000401394 COMMD5Q9GZQ3 224 aa16.93■□□□□ 0.3
CTCF-202ENST00000401394 PROCRQ9UNN8 238 aa16.93■□□□□ 0.3
CTCF-202ENST00000401394 TAS2R45P59539 299 aa16.93■□□□□ 0.3
CTCF-202ENST00000401394 OR4F17Q8NGA8 305 aa16.93■□□□□ 0.3
CTCF-202ENST00000401394 IGKV1D-37A0A075B6S9 117 aa16.92■□□□□ 0.3
CTCF-202ENST00000401394 SNAI2O43623 268 aa16.92■□□□□ 0.3
CTCF-202ENST00000401394 LINC00305Q7Z4B0 112 aa16.92■□□□□ 0.3
CTCF-202ENST00000401394 ANKRD11Q6UB99 2663 aaPredicted RBP16.92■□□□□ 0.3
CTCF-202ENST00000401394 C10orf113Q5VZT2 155 aa16.92■□□□□ 0.3
CTCF-202ENST00000401394 MED13LQ71F56 2210 aa16.92■□□□□ 0.3
CTCF-202ENST00000401394 FAM27E3Q08E93 113 aa16.92■□□□□ 0.3
CTCF-202ENST00000401394 OR1B1Q8NGR6 318 aa16.92■□□□□ 0.3
CTCF-202ENST00000401394 IGFBPL1Q8WX77 278 aa16.92■□□□□ 0.3
CTCF-202ENST00000401394 FXYD5Q96DB9 178 aa16.92■□□□□ 0.3
CTCF-202ENST00000401394 PLSCR4Q9NRQ2 329 aa16.92■□□□□ 0.3
CTCF-202ENST00000401394 APC2O95996 2303 aa16.91■□□□□ 0.3
CTCF-202ENST00000401394 C2orf83Q53S99 150 aa16.91■□□□□ 0.3
CTCF-202ENST00000401394 MPV17L2Q567V2 206 aa16.91■□□□□ 0.3
CTCF-202ENST00000401394 GTSF1Q8WW33 167 aa16.91■□□□□ 0.3
CTCF-202ENST00000401394 CORO2AQ92828 525 aa16.91■□□□□ 0.3
CTCF-202ENST00000401394 CACNA1BQ00975 2339 aa16.91■□□□□ 0.3
CTCF-202ENST00000401394 ACACAQ13085 2346 aa16.91■□□□□ 0.3
CTCF-202ENST00000401394 LOC105371242A0A075B767 164 aa16.91■□□□□ 0.3
CTCF-202ENST00000401394 PGPA6NDG6 321 aa16.91■□□□□ 0.3
CTCF-202ENST00000401394 IGHV1-46P01743 117 aa16.91■□□□□ 0.3
CTCF-202ENST00000401394 IGHG3P01860 377 aa16.91■□□□□ 0.3
CTCF-202ENST00000401394 CSN3P07498 182 aa16.91■□□□□ 0.3
CTCF-202ENST00000401394 TNFAIP6P98066 277 aaPredicted RBP16.91■□□□□ 0.3
CTCF-202ENST00000401394 NBASA2RRP1 2371 aa16.9■□□□□ 0.3
CTCF-202ENST00000401394 PRR33A8MZF0 331 aa16.9■□□□□ 0.3
CTCF-202ENST00000401394 RTL8BQ17RB0 113 aa16.9■□□□□ 0.3
CTCF-202ENST00000401394 SAP30LQ9HAJ7 183 aa16.9■□□□□ 0.3
CTCF-202ENST00000401394 SLC25A5P05141 298 aaKnown RBP16.9■□□□□ 0.3
CTCF-202ENST00000401394 FAM87AP0C7U9 286 aa16.9■□□□□ 0.3
CTCF-202ENST00000401394 ZNF883P0CG24 379 aa16.9■□□□□ 0.3
CTCF-202ENST00000401394 UBE2G1P62253 170 aa16.9■□□□□ 0.3
CTCF-202ENST00000401394 RNF151Q2KHN1 245 aa16.9■□□□□ 0.3
CTCF-202ENST00000401394 SLC25A48Q6ZT89 311 aaKnown RBP16.9■□□□□ 0.3
CTCF-202ENST00000401394 SSX8Q7RTT4 187 aa16.9■□□□□ 0.3
CTCF-202ENST00000401394 NDUFA4L2Q9NRX3 87 aa16.9■□□□□ 0.3
CTCF-202ENST00000401394 ARL2-SNX15V9GYD0 113 aa16.9■□□□□ 0.3
CTCF-202ENST00000401394 C22orf46C9J442 243 aa16.89■□□□□ 0.3
CTCF-202ENST00000401394 M0R296 226 aa16.89■□□□□ 0.3
CTCF-202ENST00000401394 RPUSD1Q9UJJ7 312 aaKnown RBP16.89■□□□□ 0.3
CTCF-202ENST00000401394 FSTL3O95633 263 aa16.89■□□□□ 0.29
CTCF-202ENST00000401394 RNF7Q9UBF6 113 aa16.89■□□□□ 0.29
CTCF-202ENST00000401394 ZNF257Q9Y2Q1 563 aa16.89■□□□□ 0.29
CTCF-202ENST00000401394 FAM120AOSQ5T036 256 aa16.89■□□□□ 0.29
CTCF-202ENST00000401394 PNKDQ8N490 385 aa16.89■□□□□ 0.29
CTCF-202ENST00000401394 OR5B3Q8NH48 314 aa16.89■□□□□ 0.29
CTCF-202ENST00000401394 CBY1Q9Y3M2 126 aa16.89■□□□□ 0.29
CTCF-202ENST00000401394 TRAV9-2A0A087WT02 112 aa16.88■□□□□ 0.29
CTCF-202ENST00000401394 LOC102724200A0A096LPH7 203 aaPredicted RBP16.88■□□□□ 0.29
CTCF-202ENST00000401394 SLC25A17O43808 307 aa16.88■□□□□ 0.29
CTCF-202ENST00000401394 OR8B3Q8NGG8 313 aa16.88■□□□□ 0.29
CTCF-202ENST00000401394 ZNF430Q9H8G1 570 aaPredicted RBP16.88■□□□□ 0.29
CTCF-202ENST00000401394 SP9P0CG40 484 aa16.88■□□□□ 0.29
CTCF-202ENST00000401394 CNTFRP26992 372 aa16.88■□□□□ 0.29
CTCF-202ENST00000401394 H1FXQ92522 213 aaKnown RBP16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms