RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 LY6LH3BQJ8 138 aa9.99□□□□□ -0.81
CIITA-202ENST00000381835 ERVK-16P61578 105 aa9.99□□□□□ -0.81
CIITA-202ENST00000381835 LOXL1Q08397 574 aaPredicted RBP9.99□□□□□ -0.81
CIITA-202ENST00000381835 PRSS57Q6UWY2 283 aa9.99□□□□□ -0.81
CIITA-202ENST00000381835 NOTCH2Q04721 2471 aa9.98□□□□□ -0.81
CIITA-202ENST00000381835 IGHV1-3A0A0C4DH29 117 aa9.98□□□□□ -0.81
CIITA-202ENST00000381835 TMEM11P17152 192 aa9.98□□□□□ -0.81
CIITA-202ENST00000381835 CD1BP29016 333 aa9.98□□□□□ -0.81
CIITA-202ENST00000381835 CEACAM3P40198 252 aa9.98□□□□□ -0.81
CIITA-202ENST00000381835 RPL15P61313 204 aaKnown RBP9.98□□□□□ -0.81
CIITA-202ENST00000381835 GCSAMLQ5JQS6 135 aa9.98□□□□□ -0.81
CIITA-202ENST00000381835 TPTE2P1Q5T6R2 138 aa9.98□□□□□ -0.81
CIITA-202ENST00000381835 DERL1Q9BUN8 251 aa9.98□□□□□ -0.81
CIITA-202ENST00000381835 KCNIP2Q9NS61 270 aa9.98□□□□□ -0.81
CIITA-202ENST00000381835 IGHV3OR16-10A0A075B7F0 116 aa9.98□□□□□ -0.81
CIITA-202ENST00000381835 PGPEP1LA6NFU8 196 aa9.98□□□□□ -0.81
CIITA-202ENST00000381835 EREGO14944 169 aa9.98□□□□□ -0.81
CIITA-202ENST00000381835 UBE2E1P51965 193 aa9.98□□□□□ -0.81
CIITA-202ENST00000381835 NUTF2P61970 127 aaKnown RBP9.98□□□□□ -0.81
CIITA-202ENST00000381835 SAPCD1Q5SSQ6 148 aa9.98□□□□□ -0.81
CIITA-202ENST00000381835 LINC01356Q8N9X3 169 aa9.98□□□□□ -0.81
CIITA-202ENST00000381835 FLYWCH2Q96CP2 140 aaKnown RBP9.98□□□□□ -0.81
CIITA-202ENST00000381835 HARBI1Q96MB7 349 aa9.98□□□□□ -0.81
CIITA-202ENST00000381835 IMMP2LQ96T52 175 aa9.98□□□□□ -0.81
CIITA-202ENST00000381835 QTRT1Q9BXR0 403 aaKnown RBP9.98□□□□□ -0.81
CIITA-202ENST00000381835 C7orf69Q9H7B7 122 aa9.98□□□□□ -0.81
CIITA-202ENST00000381835 WDR83OSQ9Y284 106 aa9.98□□□□□ -0.81
CIITA-202ENST00000381835 WASHC3Q9Y3C0 194 aa9.98□□□□□ -0.81
CIITA-202ENST00000381835 PXMP4Q9Y6I8 212 aa9.98□□□□□ -0.81
CIITA-202ENST00000381835 TET2Q6N021 2002 aaPredicted RBP9.97□□□□□ -0.81
CIITA-202ENST00000381835 MDFIC2A0A1B0GVS7 189 aa9.97□□□□□ -0.81
CIITA-202ENST00000381835 SRRM4A7MD48 611 aaKnown RBP9.97□□□□□ -0.81
CIITA-202ENST00000381835 C15orf62A8K5M9 175 aa9.97□□□□□ -0.81
CIITA-202ENST00000381835 F6UZH7 168 aa9.97□□□□□ -0.81
CIITA-202ENST00000381835 MC5RP33032 325 aa9.97□□□□□ -0.81
CIITA-202ENST00000381835 RPP30P78346 268 aaKnown RBP9.97□□□□□ -0.81
CIITA-202ENST00000381835 FOXL1Q12952 345 aa9.97□□□□□ -0.81
CIITA-202ENST00000381835 TEX38Q6PEX7 206 aa9.97□□□□□ -0.81
CIITA-202ENST00000381835 TMEM144Q7Z5S9 345 aa9.97□□□□□ -0.81
CIITA-202ENST00000381835 TMEM256Q8N2U0 113 aa9.97□□□□□ -0.81
CIITA-202ENST00000381835 WFDC11Q8NEX6 87 aa9.97□□□□□ -0.81
CIITA-202ENST00000381835 SGMS2Q8NHU3 365 aa9.97□□□□□ -0.81
CIITA-202ENST00000381835 SFRP2Q96HF1 295 aa9.97□□□□□ -0.81
CIITA-202ENST00000381835 TMEM140Q9NV12 185 aa9.97□□□□□ -0.81
CIITA-202ENST00000381835 PLXNB1O43157 2135 aa9.97□□□□□ -0.81
CIITA-202ENST00000381835 TEX15Q9BXT5 2789 aa9.97□□□□□ -0.81
CIITA-202ENST00000381835 CENPVL3A0A0U1RRI6 287 aa9.96□□□□□ -0.81
CIITA-202ENST00000381835 A0A1W2PPI3 338 aa9.96□□□□□ -0.81
CIITA-202ENST00000381835 TGFAP01135 160 aa9.96□□□□□ -0.81
CIITA-202ENST00000381835 OR9G9P0C7N8 305 aa9.96□□□□□ -0.81
CIITA-202ENST00000381835 PDPNQ86YL7 162 aa9.96□□□□□ -0.81
CIITA-202ENST00000381835 OR4C13Q8NGP0 309 aa9.96□□□□□ -0.81
CIITA-202ENST00000381835 TRAV3A0A0B4J244 114 aa9.96□□□□□ -0.82
CIITA-202ENST00000381835 TRAV40A0A0B4J280 105 aa9.96□□□□□ -0.82
CIITA-202ENST00000381835 TIMM23O14925 209 aa9.96□□□□□ -0.82
CIITA-202ENST00000381835 ERVFC1-1P60608 527 aa9.96□□□□□ -0.82
CIITA-202ENST00000381835 TMEM249Q2WGJ8 235 aa9.96□□□□□ -0.82
CIITA-202ENST00000381835 OR4A47Q6IF82 309 aa9.96□□□□□ -0.82
CIITA-202ENST00000381835 ZNF114Q8NC26 417 aa9.96□□□□□ -0.82
CIITA-202ENST00000381835 OSR1Q8TAX0 266 aaPredicted RBP9.96□□□□□ -0.82
CIITA-202ENST00000381835 NAGKQ9UJ70 344 aa9.96□□□□□ -0.82
CIITA-202ENST00000381835 AKAP9Q99996 3911 aa9.96□□□□□ -0.82
CIITA-202ENST00000381835 FLNAP21333 2647 aaKnown RBP9.95□□□□□ -0.82
CIITA-202ENST00000381835 A0A1B0GUS0 222 aa9.95□□□□□ -0.82
CIITA-202ENST00000381835 SAA4P35542 130 aa9.95□□□□□ -0.82
CIITA-202ENST00000381835 TMEM177Q53S58 311 aa9.95□□□□□ -0.82
CIITA-202ENST00000381835 MINOS1Q5TGZ0 78 aa9.95□□□□□ -0.82
CIITA-202ENST00000381835 DYNAPQ8N1N2 210 aa9.95□□□□□ -0.82
CIITA-202ENST00000381835 OR4A16Q8NH70 328 aa9.95□□□□□ -0.82
CIITA-202ENST00000381835 C1orf159Q96HA4 380 aa9.95□□□□□ -0.82
CIITA-202ENST00000381835 RITA1Q96K30 269 aa9.95□□□□□ -0.82
CIITA-202ENST00000381835 MS4A10Q96PG2 267 aa9.95□□□□□ -0.82
CIITA-202ENST00000381835 ATG101Q9BSB4 218 aa9.95□□□□□ -0.82
CIITA-202ENST00000381835 SNHG12Q9BXW3 62 aa9.95□□□□□ -0.82
CIITA-202ENST00000381835 MINOS1-NBL1R4GNA1 71 aa9.95□□□□□ -0.82
CIITA-202ENST00000381835 TLN2Q9Y4G6 2542 aa9.95□□□□□ -0.82
CIITA-202ENST00000381835 ZNF705FA8MVS1 300 aaPredicted RBP9.95□□□□□ -0.82
CIITA-202ENST00000381835 NPFFO15130 113 aa9.95□□□□□ -0.82
CIITA-202ENST00000381835 ZNF705DP0CH99 300 aaPredicted RBP9.95□□□□□ -0.82
CIITA-202ENST00000381835 ZNF705BP0CI00 300 aaPredicted RBP9.95□□□□□ -0.82
CIITA-202ENST00000381835 CD24P25063 80 aa9.95□□□□□ -0.82
CIITA-202ENST00000381835 OR10J1P30954 320 aa9.95□□□□□ -0.82
CIITA-202ENST00000381835 ADMP35318 185 aa9.95□□□□□ -0.82
CIITA-202ENST00000381835 PDLIM3Q53GG5 364 aaPredicted RBP9.95□□□□□ -0.82
CIITA-202ENST00000381835 C1orf194Q5T5A4 169 aa9.95□□□□□ -0.82
CIITA-202ENST00000381835 RUSC1-AS1Q66K80 236 aa9.95□□□□□ -0.82
CIITA-202ENST00000381835 PIP4P2Q8N4L2 257 aa9.95□□□□□ -0.82
CIITA-202ENST00000381835 M0R143 59 aa9.94□□□□□ -0.82
CIITA-202ENST00000381835 SOX15O60248 233 aa9.94□□□□□ -0.82
CIITA-202ENST00000381835 NUPR1O60356 82 aa9.94□□□□□ -0.82
CIITA-202ENST00000381835 MPDU1O75352 247 aa9.94□□□□□ -0.82
CIITA-202ENST00000381835 SAA1P0DJI8 122 aaPredicted RBP9.94□□□□□ -0.82
CIITA-202ENST00000381835 ARL14EPLP0DKL9 152 aa9.94□□□□□ -0.82
CIITA-202ENST00000381835 IGHV4-31P0DP07 118 aa9.94□□□□□ -0.82
CIITA-202ENST00000381835 HNF1AP20823 631 aa9.94□□□□□ -0.82
CIITA-202ENST00000381835 GATA3P23771 443 aa9.94□□□□□ -0.82
CIITA-202ENST00000381835 BRD3OSQ6XYD6 125 aa9.94□□□□□ -0.82
CIITA-202ENST00000381835 TBL2Q9Y4P3 447 aaKnown RBP9.94□□□□□ -0.82
CIITA-202ENST00000381835 MYO9AB2RTY4 2548 aa9.94□□□□□ -0.82
CIITA-202ENST00000381835 AVPP01185 164 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms