RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 MBPP02686 304 aaPredicted RBP10.07□□□□□ -0.8
VPS28-202ENST00000377348 IGLC1P0CG04 106 aa10.07□□□□□ -0.8
VPS28-202ENST00000377348 OR10J1P30954 320 aa10.07□□□□□ -0.8
VPS28-202ENST00000377348 RAB11AP62491 216 aa10.07□□□□□ -0.8
VPS28-202ENST00000377348 GUCA2BQ16661 112 aa10.07□□□□□ -0.8
VPS28-202ENST00000377348 ETFRF1Q6IPR1 90 aa10.07□□□□□ -0.8
VPS28-202ENST00000377348 ZNF600Q6ZNG1 722 aa10.07□□□□□ -0.8
VPS28-202ENST00000377348 TMEM61Q8N0U2 210 aa10.07□□□□□ -0.8
VPS28-202ENST00000377348 Q8N1Y9 231 aa10.07□□□□□ -0.8
VPS28-202ENST00000377348 MARC2Q969Z3 335 aa10.07□□□□□ -0.8
VPS28-202ENST00000377348 ZFAND3Q9H8U3 227 aa10.07□□□□□ -0.8
VPS28-202ENST00000377348 RCL1Q9Y2P8 373 aaKnown RBP10.07□□□□□ -0.8
VPS28-202ENST00000377348 SCAF4O95104 1147 aaKnown RBP10.06□□□□□ -0.8
VPS28-202ENST00000377348 PAX9P55771 341 aa10.06□□□□□ -0.8
VPS28-202ENST00000377348 ATP5IP56385 69 aaPredicted RBP10.06□□□□□ -0.8
VPS28-202ENST00000377348 GAMTQ14353 236 aa10.06□□□□□ -0.8
VPS28-202ENST00000377348 OR1S2Q8NGQ3 325 aa10.06□□□□□ -0.8
VPS28-202ENST00000377348 MARVELD1Q9BSK0 173 aa10.06□□□□□ -0.8
VPS28-202ENST00000377348 GPN1Q9HCN4 374 aaPredicted RBP10.06□□□□□ -0.8
VPS28-202ENST00000377348 PSENENQ9NZ42 101 aa10.06□□□□□ -0.8
VPS28-202ENST00000377348 STRAPQ9Y3F4 350 aaKnown RBP10.06□□□□□ -0.8
VPS28-202ENST00000377348 SMAD5-AS1Q9Y6J3 95 aa10.06□□□□□ -0.8
VPS28-202ENST00000377348 TRAV30A0A087WSZ9 112 aa10.05□□□□□ -0.8
VPS28-202ENST00000377348 TRAV14DV4A0A0A6YYC5 116 aa10.05□□□□□ -0.8
VPS28-202ENST00000377348 IGHV7-4-1A0A0J9YVY3 117 aa10.05□□□□□ -0.8
VPS28-202ENST00000377348 PRSS46E5RG02 174 aa10.05□□□□□ -0.8
VPS28-202ENST00000377348 CCNKO75909 580 aa10.05□□□□□ -0.8
VPS28-202ENST00000377348 APOHP02749 345 aaPredicted RBP10.05□□□□□ -0.8
VPS28-202ENST00000377348 CD7P09564 240 aa10.05□□□□□ -0.8
VPS28-202ENST00000377348 GPX4P36969 197 aaPredicted RBP10.05□□□□□ -0.8
VPS28-202ENST00000377348 RPP30P78346 268 aaKnown RBP10.05□□□□□ -0.8
VPS28-202ENST00000377348 SLC35E1Q96K37 410 aa10.05□□□□□ -0.8
VPS28-202ENST00000377348 RHPN1-AS1Q9BWJ2 59 aa10.05□□□□□ -0.8
VPS28-202ENST00000377348 SMPXQ9UHP9 88 aa10.05□□□□□ -0.8
VPS28-202ENST00000377348 LSM5Q9Y4Y9 91 aaKnown RBP10.05□□□□□ -0.8
VPS28-202ENST00000377348 IGHV3-66A0A0C4DH42 116 aa10.04□□□□□ -0.8
VPS28-202ENST00000377348 CHEK1O14757 476 aa10.04□□□□□ -0.8
VPS28-202ENST00000377348 PRAF2O60831 178 aa10.04□□□□□ -0.8
VPS28-202ENST00000377348 SCGB2A1O75556 95 aa10.04□□□□□ -0.8
VPS28-202ENST00000377348 SIX6O95475 246 aa10.04□□□□□ -0.8
VPS28-202ENST00000377348 CD81P60033 236 aa10.04□□□□□ -0.8
VPS28-202ENST00000377348 OR8G2PQ6IF36 304 aa10.04□□□□□ -0.8
VPS28-202ENST00000377348 GSG1LQ6UXU4 331 aa10.04□□□□□ -0.8
VPS28-202ENST00000377348 RBPMS2Q6ZRY4 209 aaKnown RBP10.04□□□□□ -0.8
VPS28-202ENST00000377348 GTSCR1Q86UQ5 136 aa10.04□□□□□ -0.8
VPS28-202ENST00000377348 ST8SIA2Q92186 375 aa10.04□□□□□ -0.8
VPS28-202ENST00000377348 SMIM8Q96KF7 97 aa10.04□□□□□ -0.8
VPS28-202ENST00000377348 C2orf50Q96LR7 162 aa10.04□□□□□ -0.8
VPS28-202ENST00000377348 RNF2Q99496 336 aa10.04□□□□□ -0.8
VPS28-202ENST00000377348 GINS3Q9BRX5 216 aa10.04□□□□□ -0.8
VPS28-202ENST00000377348 COL7A1Q02388 2944 aa10.04□□□□□ -0.8
VPS28-202ENST00000377348 IGKV1D-37A0A075B6S9 117 aa10.03□□□□□ -0.8
VPS28-202ENST00000377348 C7orf66A4D0T2 115 aa10.03□□□□□ -0.8
VPS28-202ENST00000377348 SNRPGP15A8MWD9 76 aa10.03□□□□□ -0.8
VPS28-202ENST00000377348 K7EPK0 472 aa10.03□□□□□ -0.8
VPS28-202ENST00000377348 GOSR2O14653 212 aa10.03□□□□□ -0.8
VPS28-202ENST00000377348 METTL15P1P0C7V9 234 aa10.03□□□□□ -0.8
VPS28-202ENST00000377348 IGHV4-30-4P0DP06 118 aa10.03□□□□□ -0.8
VPS28-202ENST00000377348 YPEL3P61236 119 aaPredicted RBP10.03□□□□□ -0.8
VPS28-202ENST00000377348 ZNF90Q03938 601 aa10.03□□□□□ -0.8
VPS28-202ENST00000377348 DCTN2Q13561 401 aaKnown RBP10.03□□□□□ -0.8
VPS28-202ENST00000377348 ACOT7LQ6ZUV0 252 aa10.03□□□□□ -0.8
VPS28-202ENST00000377348 LILRB2Q8N423 598 aa10.03□□□□□ -0.8
VPS28-202ENST00000377348 RAB40CQ96S21 281 aa10.03□□□□□ -0.8
VPS28-202ENST00000377348 ASCL2Q99929 193 aa10.03□□□□□ -0.8
VPS28-202ENST00000377348 NEURL2Q9BR09 285 aa10.03□□□□□ -0.8
VPS28-202ENST00000377348 WFDC10AQ9H1F0 79 aa10.03□□□□□ -0.8
VPS28-202ENST00000377348 IGKV1OR2-108A0A075B7D4 117 aa10.02□□□□□ -0.81
VPS28-202ENST00000377348 ZFP92A6NM28 416 aa10.02□□□□□ -0.81
VPS28-202ENST00000377348 PMS2P5A8MQ11 134 aa10.02□□□□□ -0.81
VPS28-202ENST00000377348 TOMM40O96008 361 aa10.02□□□□□ -0.81
VPS28-202ENST00000377348 IL4P05112 153 aa10.02□□□□□ -0.81
VPS28-202ENST00000377348 FRMD6-AS1P0C7T7 363 aa10.02□□□□□ -0.81
VPS28-202ENST00000377348 RD3LP0DJH9 198 aa10.02□□□□□ -0.81
VPS28-202ENST00000377348 PSG1P11464 419 aa10.02□□□□□ -0.81
VPS28-202ENST00000377348 S100A10P60903 97 aa10.02□□□□□ -0.81
VPS28-202ENST00000377348 IL15RAQ13261 267 aa10.02□□□□□ -0.81
VPS28-202ENST00000377348 TMEM14EPQ6UXP3 125 aa10.02□□□□□ -0.81
VPS28-202ENST00000377348 Q8WTZ3 238 aa10.02□□□□□ -0.81
VPS28-202ENST00000377348 B9D2Q9BPU9 175 aa10.02□□□□□ -0.81
VPS28-202ENST00000377348 HUWE1Q7Z6Z7 4374 aaKnown RBP10.01□□□□□ -0.81
VPS28-202ENST00000377348 IGKV3-7A0A075B6H7 116 aa10.01□□□□□ -0.81
VPS28-202ENST00000377348 TRAV25A0A0B4J276 109 aa10.01□□□□□ -0.81
VPS28-202ENST00000377348 L7N2F9 121 aa10.01□□□□□ -0.81
VPS28-202ENST00000377348 TSPAN4O14817 238 aa10.01□□□□□ -0.81
VPS28-202ENST00000377348 TSC22D2O75157 780 aa10.01□□□□□ -0.81
VPS28-202ENST00000377348 NPPCP23582 126 aa10.01□□□□□ -0.81
VPS28-202ENST00000377348 RRAS2P62070 204 aaPredicted RBP10.01□□□□□ -0.81
VPS28-202ENST00000377348 VAMP2P63027 116 aa10.01□□□□□ -0.81
VPS28-202ENST00000377348 RAB32Q13637 225 aa10.01□□□□□ -0.81
VPS28-202ENST00000377348 USF2Q15853 346 aaPredicted RBP10.01□□□□□ -0.81
VPS28-202ENST00000377348 LAMTOR1Q6IAA8 161 aa10.01□□□□□ -0.81
VPS28-202ENST00000377348 DEFB125Q8N687 156 aa10.01□□□□□ -0.81
VPS28-202ENST00000377348 METTL26Q96S19 204 aa10.01□□□□□ -0.81
VPS28-202ENST00000377348 C11orf1Q9H5F2 150 aa10.01□□□□□ -0.81
VPS28-202ENST00000377348 VSIRQ9H7M9 311 aa10.01□□□□□ -0.81
VPS28-202ENST00000377348 SMCO3A2RU48 225 aa10□□□□□ -0.81
VPS28-202ENST00000377348 SSNA1O43805 119 aa10□□□□□ -0.81
VPS28-202ENST00000377348 DFFBO76075 338 aa10□□□□□ -0.81
VPS28-202ENST00000377348 PTTG1O95997 202 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms