RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 LINC00303Q3SY05 128 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 NUP188Q5SRE5 1749 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 TMEM144Q7Z5S9 345 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 CBLN2Q8IUK8 224 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 FAM181AQ8N9Y4 354 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 OR10W1Q8NGF6 305 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 CXCL16Q9H2A7 254 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 B9D1Q9UPM9 204 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 C3P01024 1663 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 A0A0J9YW62 118 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 HOXA6P31267 233 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 CCL18P55774 89 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 SAXO1Q8IYX7 474 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 FGF22Q9HCT0 170 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 PILRAQ9UKJ1 303 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 LSM4Q9Y4Z0 139 aaKnown RBP3.92□□□□□ -1.78
SCN1A-202ENST00000375405 TTC28Q96AY4 2481 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 IGFBP2P18065 325 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 PPP1R32Q7Z5V6 425 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 OR9G1Q8NH87 305 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 IGF2P01344 180 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 IL9P15248 144 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 TCEAL1Q15170 157 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 MAPK1IP1LQ8NDC0 245 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 TMEM170AQ8WVE7 144 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 CHAC1Q9BUX1 264 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 DLL3Q9NYJ7 618 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 A0A0J9YY99 117 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 C9orf170A2RU37 121 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 NCR3O14931 201 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 APOBEC3AP31941 199 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-202ENST00000375405 CFHR1Q03591 330 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 AWAT1Q58HT5 328 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 TEX38Q6PEX7 206 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 ZNF826PQ6ZT77 177 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 GVQW1Q8N7I0 195 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 LIFP15018 202 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 ZNF362Q5T0B9 420 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-202ENST00000375405 AQP3Q92482 292 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 MVB12AQ96EY5 273 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 TBX21Q9UL17 535 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 IGHV4-38-2P0DP08 117 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 CCL4P13236 92 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 COL9A1P20849 921 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 PFN3P60673 137 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 SERP2Q8N6R1 65 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 A0A096LNI7 61 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 F8W735 103 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-202ENST00000375405 HMGN4O00479 90 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 SERF1AO75920 110 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 CTXND1A0A1B0GTU2 59 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 NKX2-6A6NCS4 301 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 B9A039 149 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 IFNL4K9M1U5 179 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 BTG1P62324 171 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 FOXE3Q13461 319 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 TMEFF2Q9UIK5 374 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-202ENST00000375405 EML6Q6ZMW3 1958 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 OTOGLQ3ZCN5 2332 aa3.91□□□□□ -1.78
SCN1A-202ENST00000375405 IGHV4-30-2A0A087WSY4 118 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 PRR33A8MZF0 331 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 LCN12Q6JVE5 192 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 CYP2G1PQ6ZSU1 146 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 GNB1LQ9BYB4 327 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 MBNL3Q9NUK0 354 aaKnown RBP3.9□□□□□ -1.78
SCN1A-202ENST00000375405 U3KQE9 123 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 TAF1P21675 1872 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 KIR2DL5BA0A0G2JN68 375 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 KIR2DL5BA0A0G2JPC4 375 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 PATE3B3GLJ2 98 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 D6R8Y8 96 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 EFEMP2O95967 443 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 RNASE2P10153 161 aaKnown RBP3.9□□□□□ -1.78
SCN1A-202ENST00000375405 KIR2DL5AQ8N109 375 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 ZNF645Q8N7E2 425 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 MSRB2Q9Y3D2 182 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 PDCD11Q14690 1871 aaKnown RBP3.9□□□□□ -1.78
SCN1A-202ENST00000375405 TRBV25-1A0A075B6N4 114 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 A0A1B0GWJ7 208 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 H3BQ15 152 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 EFNA2O43921 213 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 BAALC-AS2P0C853 105 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 MPV17P39210 176 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 IRF3Q14653 427 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 SLC25A48Q6ZT89 311 aaKnown RBP3.9□□□□□ -1.78
SCN1A-202ENST00000375405 LINC00477Q96M19 166 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 TNFRSF12AQ9NP84 129 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 IL17CQ9P0M4 197 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 ZNF492Q9P255 531 aa3.9□□□□□ -1.78
SCN1A-202ENST00000375405 PTGDSP41222 190 aa3.9□□□□□ -1.79
SCN1A-202ENST00000375405 C8orf82Q6P1X6 216 aaPredicted RBP3.9□□□□□ -1.79
SCN1A-202ENST00000375405 LINC01551Q86U37 167 aa3.9□□□□□ -1.79
SCN1A-202ENST00000375405 PIP4P2Q8N4L2 257 aa3.9□□□□□ -1.79
SCN1A-202ENST00000375405 MLST8Q9BVC4 326 aa3.9□□□□□ -1.79
SCN1A-202ENST00000375405 XCL2Q9UBD3 114 aa3.9□□□□□ -1.79
SCN1A-202ENST00000375405 IQCF6A8MYZ5 107 aa3.9□□□□□ -1.79
SCN1A-202ENST00000375405 TNFSF13O75888 250 aa3.9□□□□□ -1.79
SCN1A-202ENST00000375405 RGPD5Q99666 1765 aa3.9□□□□□ -1.79
SCN1A-202ENST00000375405 IGHV5-51A0A0C4DH38 117 aa3.9□□□□□ -1.79
SCN1A-202ENST00000375405 PPYP01298 95 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms