RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 IGKV1-27A0A075B6S5 117 aa7.5□□□□□ -1.21
SYNE1-205ENST00000367251 IGHV3OR16-8A0A075B7F1 116 aa7.5□□□□□ -1.21
SYNE1-205ENST00000367251 PTPRDP23468 1912 aa7.5□□□□□ -1.21
SYNE1-205ENST00000367251 IL18BPO95998 194 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 RIPPLY3P57055 190 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 DSCR9P59020 149 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 FOXL1Q12952 345 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 KIAA1644Q3SXP7 199 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 PEAR1Q5VY43 1037 aaPredicted RBP7.49□□□□□ -1.21
SYNE1-205ENST00000367251 LEMD1Q68G75 181 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 PLSCR4Q9NRQ2 329 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 PEF1Q9UBV8 284 aaKnown RBP7.49□□□□□ -1.21
SYNE1-205ENST00000367251 TMEM136Q6ZRR5 245 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 Q71RC1 249 aaPredicted RBP7.49□□□□□ -1.21
SYNE1-205ENST00000367251 J3QKU1 62 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 HIST1H2BKO60814 126 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 HIST1H2BJP06899 126 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 CSRP1P21291 193 aaKnown RBP7.49□□□□□ -1.21
SYNE1-205ENST00000367251 HIST1H2BOP23527 126 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 HIST1H2BBP33778 126 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 HIST1H2BDP58876 126 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 HIST1H2BCP62807 126 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 BSPH1Q075Z2 132 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 HIST2H2BEQ16778 126 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.49□□□□□ -1.21
SYNE1-205ENST00000367251 TMEM14EPQ6UXP3 125 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 HIST1H2BHQ93079 126 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 HIST1H2BNQ99877 126 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 HIST1H2BMQ99879 126 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 PLXNA4Q9HCM2 1894 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 IGHV3-48P01763 117 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 S100A7L2Q5SY68 101 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 OR5AN1Q8NGI8 311 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 NDUFAF3Q9BU61 184 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 C21orf62Q9NYP8 219 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 IGHV1-18A0A0C4DH31 117 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 PINLYPA6NC86 204 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 SRRM5B3KS81 715 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 FNDC10F2Z333 226 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 SLC17A3O00476 420 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 FAM169BQ8N8A8 192 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 FGFBP3Q8TAT2 258 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 Q9H3A6 140 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 JKAMPQ9P055 326 aa7.49□□□□□ -1.21
SYNE1-205ENST00000367251 SOD3P08294 240 aa7.48□□□□□ -1.21
SYNE1-205ENST00000367251 STAG3L3P0CL85 134 aa7.48□□□□□ -1.21
SYNE1-205ENST00000367251 ARPC1AQ92747 370 aa7.48□□□□□ -1.21
SYNE1-205ENST00000367251 ZNF414Q96IQ9 312 aa7.48□□□□□ -1.21
SYNE1-205ENST00000367251 JPT2Q9H910 190 aa7.48□□□□□ -1.21
SYNE1-205ENST00000367251 SPRR3Q9UBC9 169 aa7.48□□□□□ -1.21
SYNE1-205ENST00000367251 RNASE4P34096 147 aaKnown RBP7.48□□□□□ -1.21
SYNE1-205ENST00000367251 TIMP3P35625 211 aa7.48□□□□□ -1.21
SYNE1-205ENST00000367251 GLRX5Q86SX6 157 aa7.48□□□□□ -1.21
SYNE1-205ENST00000367251 RNF5Q99942 180 aa7.48□□□□□ -1.21
SYNE1-205ENST00000367251 MGAMO43451 1857 aa7.48□□□□□ -1.21
SYNE1-205ENST00000367251 RAMP3O60896 148 aa7.48□□□□□ -1.21
SYNE1-205ENST00000367251 RPL35AP18077 110 aaKnown RBP7.48□□□□□ -1.21
SYNE1-205ENST00000367251 LINC01559Q495D7 138 aa7.48□□□□□ -1.21
SYNE1-205ENST00000367251 SLC50A1Q9BRV3 221 aa7.48□□□□□ -1.21
SYNE1-205ENST00000367251 TMEM133Q9H2Q1 129 aa7.48□□□□□ -1.21
SYNE1-205ENST00000367251 C7orf71A4D174 169 aa7.48□□□□□ -1.21
SYNE1-205ENST00000367251 OR9G9P0C7N8 305 aa7.48□□□□□ -1.21
SYNE1-205ENST00000367251 PAX1P15863 534 aa7.48□□□□□ -1.21
SYNE1-205ENST00000367251 CMC4P56277 68 aaPredicted RBP7.48□□□□□ -1.21
SYNE1-205ENST00000367251 EFNB3Q15768 340 aa7.48□□□□□ -1.21
SYNE1-205ENST00000367251 HAPLN4Q86UW8 402 aa7.48□□□□□ -1.21
SYNE1-205ENST00000367251 SPACA3Q8IXA5 215 aa7.48□□□□□ -1.21
SYNE1-205ENST00000367251 FBXL15Q9H469 300 aa7.48□□□□□ -1.21
SYNE1-205ENST00000367251 EPDR1Q9UM22 224 aa7.48□□□□□ -1.21
SYNE1-205ENST00000367251 TRAV40A0A0B4J280 105 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 GNLYP22749 145 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 B3GALT5-AS1P59052 145 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 CHCHD1Q96BP2 118 aaKnown RBP7.47□□□□□ -1.21
SYNE1-205ENST00000367251 A0A1B0GV90 55 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 SMIM13P0DJ93 91 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 ESPL1Q14674 2120 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 Q5PR19 223 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 TEX38Q6PEX7 206 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 PLXNA2O75051 1894 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 NBR2O15453 112 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 TCF23Q7RTU1 214 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 NEUROG1Q92886 237 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 PRADC1Q9BSG0 188 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 SPTAN1Q13813 2472 aaKnown RBP7.47□□□□□ -1.21
SYNE1-205ENST00000367251 ADMP35318 185 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 GATA4P43694 442 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 PLP1P60201 277 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 CKS1BP61024 79 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 FAM71F2Q6NXP2 309 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 MRPL52Q86TS9 123 aaKnown RBP7.47□□□□□ -1.21
SYNE1-205ENST00000367251 FAM110DQ8TAY7 271 aaPredicted RBP7.47□□□□□ -1.21
SYNE1-205ENST00000367251 GLMPQ8WWB7 406 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 PRDM13Q9H4Q3 707 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 MYLKQ15746 1914 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 TRAV21A0A0B4J279 112 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 ITGB1BP1O14713 200 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 CTAG1AP78358 180 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 TREML4Q6UXN2 200 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 ASCL2Q99929 193 aa7.47□□□□□ -1.21
SYNE1-205ENST00000367251 APOHP02749 345 aaPredicted RBP7.46□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms