RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 PSCAO43653 123 aa5.35□□□□□ -1.55
UPF2-201ENST00000356352 LYZL4Q96KX0 146 aa5.35□□□□□ -1.55
UPF2-201ENST00000356352 SPRR3Q9UBC9 169 aa5.35□□□□□ -1.55
UPF2-201ENST00000356352 PYYP10082 97 aa5.35□□□□□ -1.55
UPF2-201ENST00000356352 ID3Q02535 119 aa5.35□□□□□ -1.55
UPF2-201ENST00000356352 ASCL4Q6XD76 172 aa5.35□□□□□ -1.55
UPF2-201ENST00000356352 LYPD1Q8N2G4 141 aa5.35□□□□□ -1.55
UPF2-201ENST00000356352 DNAJC30Q96LL9 226 aa5.35□□□□□ -1.55
UPF2-201ENST00000356352 SRSF8Q9BRL6 282 aaKnown RBP5.35□□□□□ -1.55
UPF2-201ENST00000356352 PRDM6Q9NQX0 595 aa5.35□□□□□ -1.55
UPF2-201ENST00000356352 RPUSD1Q9UJJ7 312 aaKnown RBP5.35□□□□□ -1.55
UPF2-201ENST00000356352 A0A1B0GWJ7 208 aa5.35□□□□□ -1.55
UPF2-201ENST00000356352 ZNF672Q499Z4 452 aaPredicted RBP5.35□□□□□ -1.55
UPF2-201ENST00000356352 HEPN1Q6WQI6 88 aa5.35□□□□□ -1.55
UPF2-201ENST00000356352 ANAPC13Q9BS18 74 aa5.35□□□□□ -1.55
UPF2-201ENST00000356352 IGKV1D-13A0A0B4J2D9 117 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 A0A1B0GW64 132 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 TMEM8BA6NDV4 472 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 VCYO14598 125 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 RAMP3O60896 148 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 IGHV1-8P0DP01 117 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 IGKV1-13P0DP09 117 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 CD33P20138 364 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 LAIR2Q6ISS4 152 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 TMEM105Q8N8V8 129 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 ZNF479Q96JC4 524 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 LY96Q9Y6Y9 160 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 SRRM5B3KS81 715 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 AMBPP02760 352 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 C1QTNF9P0C862 333 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 ZNF138P52744 262 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 ERCC8Q13216 396 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 C3orf36Q3SXR2 165 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 TEX38Q6PEX7 206 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 IGHV1-3A0A0C4DH29 117 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 DMRTA1Q5VZB9 504 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 OR10W1Q8NGF6 305 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 MGST2Q99735 147 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 NTN3O00634 580 aaPredicted RBP5.34□□□□□ -1.55
UPF2-201ENST00000356352 LDLRAD4O15165 306 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 LEPROTO15243 131 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 CRYGSP22914 178 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 C15orf32Q32M92 178 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 ZNF837Q96EG3 531 aaPredicted RBP5.34□□□□□ -1.55
UPF2-201ENST00000356352 NDUFAF3Q9BU61 184 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 RNF126Q9BV68 326 aa5.34□□□□□ -1.55
UPF2-201ENST00000356352 VWC2LB2RUY7 222 aa5.34□□□□□ -1.56
UPF2-201ENST00000356352 EVI2AP22794 236 aa5.34□□□□□ -1.56
UPF2-201ENST00000356352 SS18Q15532 418 aa5.34□□□□□ -1.56
UPF2-201ENST00000356352 GAGE13Q4V321 117 aa5.34□□□□□ -1.56
UPF2-201ENST00000356352 GSN-AS1Q9NRJ2 163 aa5.34□□□□□ -1.56
UPF2-201ENST00000356352 GON4LQ3T8J9 2241 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 SCN3AQ9NY46 2000 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 TMEM178BH3BS89 294 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 GAGE2EQ4V326 116 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 GATD1Q8NB37 220 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 SIGMAR1Q99720 223 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 GAGE2DQ9UEU5 116 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 COL11A2P13942 1736 aaPredicted RBP5.33□□□□□ -1.56
UPF2-201ENST00000356352 TRAV1-1A0A0B4J248 108 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 MYMXA0A1B0GTQ4 84 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 SHISA3A0PJX4 238 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 NDUFS8O00217 210 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 PAX4O43316 350 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 CEACAM8P31997 349 aaPredicted RBP5.33□□□□□ -1.56
UPF2-201ENST00000356352 FOXL1Q12952 345 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 SAMD5Q5TGI4 173 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 GFI1BQ5VTD9 330 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 TREML4Q6UXN2 200 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 OCC1Q8TAD7 63 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 LAMTOR3Q9UHA4 124 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 KLF12Q9Y4X4 402 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 FGF16O43320 207 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 TMEM200BQ69YZ2 307 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 LINC01356Q8N9X3 169 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 MCM3APO60318 1980 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 TRGV1A0A0A0MS02 117 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 GATA3P23771 443 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 SUPT4H1P63272 117 aaKnown RBP5.33□□□□□ -1.56
UPF2-201ENST00000356352 CD300EQ496F6 205 aaPredicted RBP5.33□□□□□ -1.56
UPF2-201ENST00000356352 ZNF876PQ49A33 203 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 ST6GALNAC3Q8NDV1 305 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 FNDC4Q9H6D8 234 aaPredicted RBP5.33□□□□□ -1.56
UPF2-201ENST00000356352 DEPPQ9NTK1 212 aa5.33□□□□□ -1.56
UPF2-201ENST00000356352 IGKV1-9A0A0C4DH69 117 aa5.32□□□□□ -1.56
UPF2-201ENST00000356352 FNDC10F2Z333 226 aa5.32□□□□□ -1.56
UPF2-201ENST00000356352 ZNF562Q6V9R5 426 aa5.32□□□□□ -1.56
UPF2-201ENST00000356352 PSG3Q16557 428 aa5.32□□□□□ -1.56
UPF2-201ENST00000356352 CT83Q5H943 113 aa5.32□□□□□ -1.56
UPF2-201ENST00000356352 RPRMLQ8N4K4 120 aa5.32□□□□□ -1.56
UPF2-201ENST00000356352 ZFC3H1O60293 1989 aaKnown RBP5.32□□□□□ -1.56
UPF2-201ENST00000356352 IGKV2-40A0A087WW87 121 aaPredicted RBP5.32□□□□□ -1.56
UPF2-201ENST00000356352 TRBV6-6A0A0A6YYG2 114 aa5.32□□□□□ -1.56
UPF2-201ENST00000356352 IGKV2D-40P01614 121 aaPredicted RBP5.32□□□□□ -1.56
UPF2-201ENST00000356352 TCRAP04437 139 aa5.32□□□□□ -1.56
UPF2-201ENST00000356352 GGTLC1Q9BX51 225 aa5.32□□□□□ -1.56
UPF2-201ENST00000356352 RFNGQ9Y644 331 aa5.32□□□□□ -1.56
UPF2-201ENST00000356352 LRRC37AA6NMS7 1700 aa5.32□□□□□ -1.56
UPF2-201ENST00000356352 TRBV24-1A0A075B6N3 115 aa5.32□□□□□ -1.56
UPF2-201ENST00000356352 GZMBP10144 247 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms