RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 NHSL1Q5SYE7 1610 aa10.64□□□□□ -0.71
COL6A3-203ENST00000353578 TIAF1O95411 115 aa10.63□□□□□ -0.71
COL6A3-203ENST00000353578 UBL5Q9BZL1 73 aa10.63□□□□□ -0.71
COL6A3-203ENST00000353578 DLL3Q9NYJ7 618 aa10.63□□□□□ -0.71
COL6A3-203ENST00000353578 LINC01590Q5TEZ4 76 aa10.63□□□□□ -0.71
COL6A3-203ENST00000353578 EEF1AKMT3Q96AZ1 226 aa10.63□□□□□ -0.71
COL6A3-203ENST00000353578 RNASE7Q9H1E1 156 aaKnown RBP10.63□□□□□ -0.71
COL6A3-203ENST00000353578 TOMM40O96008 361 aa10.63□□□□□ -0.71
COL6A3-203ENST00000353578 NXPH1P58417 271 aa10.63□□□□□ -0.71
COL6A3-203ENST00000353578 REG1BP48304 166 aa10.63□□□□□ -0.71
COL6A3-203ENST00000353578 KLRD1Q13241 179 aa10.63□□□□□ -0.71
COL6A3-203ENST00000353578 SOCS3O14543 225 aa10.63□□□□□ -0.71
COL6A3-203ENST00000353578 RFLNBQ8N5W9 214 aa10.63□□□□□ -0.71
COL6A3-203ENST00000353578 ZNF721Q8TF20 911 aa10.63□□□□□ -0.71
COL6A3-203ENST00000353578 CFHR5Q9BXR6 569 aa10.63□□□□□ -0.71
COL6A3-203ENST00000353578 TMEM74BQ9NUR3 256 aa10.63□□□□□ -0.71
COL6A3-203ENST00000353578 TEX45Q8NA69 505 aa10.63□□□□□ -0.71
COL6A3-203ENST00000353578 J3KRW8 73 aa10.63□□□□□ -0.71
COL6A3-203ENST00000353578 C15orf61A6NNL5 157 aa10.62□□□□□ -0.71
COL6A3-203ENST00000353578 NPPCP23582 126 aa10.62□□□□□ -0.71
COL6A3-203ENST00000353578 PDCD1Q15116 288 aa10.62□□□□□ -0.71
COL6A3-203ENST00000353578 RNF166Q96A37 237 aaPredicted RBP10.62□□□□□ -0.71
COL6A3-203ENST00000353578 TCRBV4S1A1TA0A5B7 111 aa10.62□□□□□ -0.71
COL6A3-203ENST00000353578 MALP21145 153 aa10.62□□□□□ -0.71
COL6A3-203ENST00000353578 SIGLEC8Q9NYZ4 499 aa10.62□□□□□ -0.71
COL6A3-203ENST00000353578 FOXI3A8MTJ6 420 aaPredicted RBP10.62□□□□□ -0.71
COL6A3-203ENST00000353578 NRXN2Q9P2S2 1712 aa10.62□□□□□ -0.71
COL6A3-203ENST00000353578 A0A1W2PPV9 198 aa10.62□□□□□ -0.71
COL6A3-203ENST00000353578 GREM1O60565 184 aa10.62□□□□□ -0.71
COL6A3-203ENST00000353578 CCL1P22362 96 aa10.62□□□□□ -0.71
COL6A3-203ENST00000353578 FBXL15Q9H469 300 aa10.62□□□□□ -0.71
COL6A3-203ENST00000353578 ZNF106Q9H2Y7 1883 aaKnown RBP10.62□□□□□ -0.71
COL6A3-203ENST00000353578 OCC1Q8TAD7 63 aa10.62□□□□□ -0.71
COL6A3-203ENST00000353578 J3QRE1 110 aa10.61□□□□□ -0.71
COL6A3-203ENST00000353578 IDI2-AS1Q9NZ38 188 aa10.61□□□□□ -0.71
COL6A3-203ENST00000353578 AMN1Q8IY45 258 aa10.61□□□□□ -0.71
COL6A3-203ENST00000353578 FAM89BQ8N5H3 189 aa10.61□□□□□ -0.71
COL6A3-203ENST00000353578 RASL10BQ96S79 203 aa10.61□□□□□ -0.71
COL6A3-203ENST00000353578 RPUSD1Q9UJJ7 312 aaKnown RBP10.61□□□□□ -0.71
COL6A3-203ENST00000353578 MYMXA0A1B0GTQ4 84 aa10.61□□□□□ -0.71
COL6A3-203ENST00000353578 RPL32P62910 135 aaKnown RBP10.61□□□□□ -0.71
COL6A3-203ENST00000353578 SIGLEC12Q96PQ1 595 aa10.61□□□□□ -0.71
COL6A3-203ENST00000353578 VGLL1Q99990 258 aa10.61□□□□□ -0.71
COL6A3-203ENST00000353578 FOXQ1Q9C009 403 aa10.61□□□□□ -0.71
COL6A3-203ENST00000353578 C12orf76Q8N812 135 aaPredicted RBP10.61□□□□□ -0.71
COL6A3-203ENST00000353578 SHISA9B4DS77 424 aa10.61□□□□□ -0.71
COL6A3-203ENST00000353578 CYTL1Q9NRR1 136 aa10.61□□□□□ -0.71
COL6A3-203ENST00000353578 C21orf140B9A014 251 aa10.61□□□□□ -0.71
COL6A3-203ENST00000353578 TFF3Q07654 80 aa10.61□□□□□ -0.71
COL6A3-203ENST00000353578 C17orf99Q6UX52 265 aa10.61□□□□□ -0.71
COL6A3-203ENST00000353578 ZPLD1Q8TCW7 415 aa10.6□□□□□ -0.71
COL6A3-203ENST00000353578 COL5A3P25940 1745 aaPredicted RBP10.6□□□□□ -0.71
COL6A3-203ENST00000353578 SRSF2Q01130 221 aaKnown RBP10.6□□□□□ -0.71
COL6A3-203ENST00000353578 EFNB3Q15768 340 aa10.6□□□□□ -0.71
COL6A3-203ENST00000353578 PILRBQ9UKJ0 227 aa10.6□□□□□ -0.71
COL6A3-203ENST00000353578 PPIHO43447 177 aaKnown RBP10.6□□□□□ -0.71
COL6A3-203ENST00000353578 TRGV8A0A0C4DH27 118 aa10.6□□□□□ -0.71
COL6A3-203ENST00000353578 CT62P0C5K7 136 aa10.6□□□□□ -0.71
COL6A3-203ENST00000353578 COL9A1P20849 921 aa10.6□□□□□ -0.71
COL6A3-203ENST00000353578 EXPH5Q8NEV8 1989 aa10.6□□□□□ -0.71
COL6A3-203ENST00000353578 ZNF83P51522 516 aa10.6□□□□□ -0.71
COL6A3-203ENST00000353578 CCL17Q92583 94 aa10.6□□□□□ -0.71
COL6A3-203ENST00000353578 TRAV12-3A0A0B4J271 114 aa10.6□□□□□ -0.71
COL6A3-203ENST00000353578 ZNHIT1O43257 154 aa10.6□□□□□ -0.71
COL6A3-203ENST00000353578 BVES-AS1Q5T3Y7 98 aa10.6□□□□□ -0.71
COL6A3-203ENST00000353578 NAV3Q8IVL0 2385 aa10.59□□□□□ -0.71
COL6A3-203ENST00000353578 LOXL2Q9Y4K0 774 aa10.59□□□□□ -0.71
COL6A3-203ENST00000353578 MGAMO43451 1857 aa10.59□□□□□ -0.71
COL6A3-203ENST00000353578 PDLIM4P50479 330 aa10.59□□□□□ -0.71
COL6A3-203ENST00000353578 TMEM141Q96I45 108 aa10.59□□□□□ -0.71
COL6A3-203ENST00000353578 C9JAW5 83 aa10.59□□□□□ -0.71
COL6A3-203ENST00000353578 GFRA3O60609 400 aa10.59□□□□□ -0.71
COL6A3-203ENST00000353578 GFRA1P56159 465 aa10.59□□□□□ -0.71
COL6A3-203ENST00000353578 Q6ZS49 121 aa10.59□□□□□ -0.71
COL6A3-203ENST00000353578 LHFPL1Q86WI0 220 aa10.59□□□□□ -0.71
COL6A3-203ENST00000353578 GFERP55789 205 aa10.59□□□□□ -0.71
COL6A3-203ENST00000353578 THSD7AQ9UPZ6 1657 aa10.59□□□□□ -0.71
COL6A3-203ENST00000353578 H3BMG7 143 aa10.58□□□□□ -0.72
COL6A3-203ENST00000353578 ANKRD29Q8N6D5 301 aa10.58□□□□□ -0.72
COL6A3-203ENST00000353578 COX7A1P24310 79 aa10.58□□□□□ -0.72
COL6A3-203ENST00000353578 C9orf50Q5SZB4 431 aa10.58□□□□□ -0.72
COL6A3-203ENST00000353578 SPSB2Q99619 263 aa10.58□□□□□ -0.72
COL6A3-203ENST00000353578 LOXL3P58215 753 aa10.58□□□□□ -0.72
COL6A3-203ENST00000353578 C3AR1Q16581 482 aa10.58□□□□□ -0.72
COL6A3-203ENST00000353578 ECSCRQ19T08 205 aa10.58□□□□□ -0.72
COL6A3-203ENST00000353578 DEFB125Q8N687 156 aa10.58□□□□□ -0.72
COL6A3-203ENST00000353578 DEFB127Q9H1M4 99 aa10.58□□□□□ -0.72
COL6A3-203ENST00000353578 IGHV3-64DA0A0J9YX35 117 aa10.58□□□□□ -0.72
COL6A3-203ENST00000353578 CD3EP07766 207 aa10.58□□□□□ -0.72
COL6A3-203ENST00000353578 YPEL3P61236 119 aaPredicted RBP10.58□□□□□ -0.72
COL6A3-203ENST00000353578 TMEM256Q8N2U0 113 aa10.58□□□□□ -0.72
COL6A3-203ENST00000353578 GLMPQ8WWB7 406 aa10.58□□□□□ -0.72
COL6A3-203ENST00000353578 WDR83OSQ9Y284 106 aa10.58□□□□□ -0.72
COL6A3-203ENST00000353578 MRAPQ8TCY5 172 aa10.58□□□□□ -0.72
COL6A3-203ENST00000353578 CTHRC1Q96CG8 243 aa10.58□□□□□ -0.72
COL6A3-203ENST00000353578 CLEC7AQ9BXN2 247 aa10.58□□□□□ -0.72
COL6A3-203ENST00000353578 LGALS9BQ3B8N2 356 aa10.57□□□□□ -0.72
COL6A3-203ENST00000353578 FAM74A4Q5TZK3 123 aa10.57□□□□□ -0.72
COL6A3-203ENST00000353578 LGALS9CQ6DKI2 356 aa10.57□□□□□ -0.72
COL6A3-203ENST00000353578 SFTA2Q6UW10 78 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms