RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 TMEM116Q8NCL8 245 aa17.74■□□□□ 0.43
UPF3A-201ENST00000351487 ST6GALNAC3Q8NDV1 305 aa17.74■□□□□ 0.43
UPF3A-201ENST00000351487 CMTM2Q8TAZ6 248 aa17.74■□□□□ 0.43
UPF3A-201ENST00000351487 NOL4LQ96MY1 436 aaPredicted RBP17.74■□□□□ 0.43
UPF3A-201ENST00000351487 SMIM27A0A1W2PRY6 76 aa17.73■□□□□ 0.43
UPF3A-201ENST00000351487 ZNF705GA8MUZ8 300 aaPredicted RBP17.73■□□□□ 0.43
UPF3A-201ENST00000351487 CRISP2P16562 243 aa17.73■□□□□ 0.43
UPF3A-201ENST00000351487 CNTFRP26992 372 aa17.73■□□□□ 0.43
UPF3A-201ENST00000351487 HCP5Q6MZN7 132 aa17.73■□□□□ 0.43
UPF3A-201ENST00000351487 WDR73Q6P4I2 378 aa17.73■□□□□ 0.43
UPF3A-201ENST00000351487 LINC00305Q7Z4B0 112 aa17.73■□□□□ 0.43
UPF3A-201ENST00000351487 C8orf46Q8TAG6 207 aa17.73■□□□□ 0.43
UPF3A-201ENST00000351487 LINC01560Q8TB33 94 aa17.73■□□□□ 0.43
UPF3A-201ENST00000351487 MISP3Q96FF7 219 aa17.73■□□□□ 0.43
UPF3A-201ENST00000351487 INSIG2Q9Y5U4 225 aa17.73■□□□□ 0.43
UPF3A-201ENST00000351487 LYNX1G3V0Z9 82 aa17.72■□□□□ 0.43
UPF3A-201ENST00000351487 CORTO00230 105 aa17.72■□□□□ 0.43
UPF3A-201ENST00000351487 FRMD6-AS1P0C7T7 363 aa17.72■□□□□ 0.43
UPF3A-201ENST00000351487 LYNX1P0DP58 116 aa17.72■□□□□ 0.43
UPF3A-201ENST00000351487 MYCNOSP40205 109 aa17.72■□□□□ 0.43
UPF3A-201ENST00000351487 LINC00310P59036 64 aa17.72■□□□□ 0.43
UPF3A-201ENST00000351487 RAB4BP61018 213 aa17.72■□□□□ 0.43
UPF3A-201ENST00000351487 FXYD3Q14802 87 aa17.72■□□□□ 0.43
UPF3A-201ENST00000351487 STXBP6Q8NFX7 210 aa17.72■□□□□ 0.43
UPF3A-201ENST00000351487 C22orf15Q8WYQ4 148 aa17.72■□□□□ 0.43
UPF3A-201ENST00000351487 PERPQ96FX8 193 aa17.72■□□□□ 0.43
UPF3A-201ENST00000351487 PEX7O00628 323 aa17.72■□□□□ 0.43
UPF3A-201ENST00000351487 MGST1P10620 155 aaKnown RBP17.72■□□□□ 0.43
UPF3A-201ENST00000351487 CA7P43166 264 aa17.72■□□□□ 0.43
UPF3A-201ENST00000351487 DLX1P56177 255 aa17.72■□□□□ 0.43
UPF3A-201ENST00000351487 RUSC1-AS1Q66K80 236 aa17.72■□□□□ 0.43
UPF3A-201ENST00000351487 SIAH2O43255 324 aa17.71■□□□□ 0.43
UPF3A-201ENST00000351487 MOSP00540 346 aa17.71■□□□□ 0.43
UPF3A-201ENST00000351487 Q0VG73 95 aa17.71■□□□□ 0.43
UPF3A-201ENST00000351487 A8MWP6 167 aa17.71■□□□□ 0.43
UPF3A-201ENST00000351487 FAM231DQ6ZW35 169 aa17.71■□□□□ 0.43
UPF3A-201ENST00000351487 PPP1R27Q86WC6 154 aa17.71■□□□□ 0.43
UPF3A-201ENST00000351487 PPIAL4CA0A0B4J2A2 164 aa17.7■□□□□ 0.42
UPF3A-201ENST00000351487 PPIAL4GP0DN37 164 aa17.7■□□□□ 0.42
UPF3A-201ENST00000351487 PAFAH1B2P68402 229 aa17.7■□□□□ 0.42
UPF3A-201ENST00000351487 UNQ6494/PRO21346Q6UXR6 183 aa17.7■□□□□ 0.42
UPF3A-201ENST00000351487 FAM90A27PA6NNH2 459 aa17.7■□□□□ 0.42
UPF3A-201ENST00000351487 ZNF672Q499Z4 452 aaPredicted RBP17.7■□□□□ 0.42
UPF3A-201ENST00000351487 TMEM136Q6ZRR5 245 aa17.7■□□□□ 0.42
UPF3A-201ENST00000351487 LINC00479Q96M42 142 aa17.7■□□□□ 0.42
UPF3A-201ENST00000351487 MS4A10Q96PG2 267 aa17.7■□□□□ 0.42
UPF3A-201ENST00000351487 F11RQ9Y624 299 aaKnown RBP17.7■□□□□ 0.42
UPF3A-201ENST00000351487 TEX22C9J3V5 150 aa17.69■□□□□ 0.42
UPF3A-201ENST00000351487 RANP62826 216 aaKnown RBP17.69■□□□□ 0.42
UPF3A-201ENST00000351487 SERF1AO75920 110 aa17.68■□□□□ 0.42
UPF3A-201ENST00000351487 TPPP2P59282 170 aa17.68■□□□□ 0.42
UPF3A-201ENST00000351487 PLP1P60201 277 aa17.68■□□□□ 0.42
UPF3A-201ENST00000351487 OR1B1Q8NGR6 318 aa17.68■□□□□ 0.42
UPF3A-201ENST00000351487 RPEQ96AT9 228 aa17.68■□□□□ 0.42
UPF3A-201ENST00000351487 RNF5Q99942 180 aa17.68■□□□□ 0.42
UPF3A-201ENST00000351487 LY6LH3BQJ8 138 aa17.68■□□□□ 0.42
UPF3A-201ENST00000351487 ORM2P19652 201 aa17.68■□□□□ 0.42
UPF3A-201ENST00000351487 GRNP28799 593 aaKnown RBP17.68■□□□□ 0.42
UPF3A-201ENST00000351487 MBD6Q96DN6 1003 aa17.68■□□□□ 0.42
UPF3A-201ENST00000351487 ZMAT5Q9UDW3 170 aaKnown RBP17.68■□□□□ 0.42
UPF3A-201ENST00000351487 NAT8BQ9UHF3 227 aa17.68■□□□□ 0.42
UPF3A-201ENST00000351487 CEP295Q9C0D2 2601 aa17.68■□□□□ 0.42
UPF3A-201ENST00000351487 KALRNO60229 2985 aa17.67■□□□□ 0.42
UPF3A-201ENST00000351487 AMY1AP04745 511 aa17.67■□□□□ 0.42
UPF3A-201ENST00000351487 PRB3Q04118 309 aaPredicted RBP17.67■□□□□ 0.42
UPF3A-201ENST00000351487 C19orf35Q6ZS72 473 aa17.67■□□□□ 0.42
UPF3A-201ENST00000351487 BAGE2Q86Y30 109 aa17.67■□□□□ 0.42
UPF3A-201ENST00000351487 NHLRC2Q8NBF2 726 aa17.67■□□□□ 0.42
UPF3A-201ENST00000351487 COX7A1P24310 79 aa17.67■□□□□ 0.42
UPF3A-201ENST00000351487 TCL1AP56279 114 aa17.67■□□□□ 0.42
UPF3A-201ENST00000351487 TMEM183BQ1AE95 376 aa17.67■□□□□ 0.42
UPF3A-201ENST00000351487 OR8B3Q8NGG8 313 aa17.67■□□□□ 0.42
UPF3A-201ENST00000351487 OR8B2Q96RD0 313 aa17.67■□□□□ 0.42
UPF3A-201ENST00000351487 ANKHD1Q8IWZ3 2542 aaKnown RBP17.67■□□□□ 0.42
UPF3A-201ENST00000351487 IZUMO1RA6ND01 250 aa17.66■□□□□ 0.42
UPF3A-201ENST00000351487 HLA-DQA1P01909 254 aa17.66■□□□□ 0.42
UPF3A-201ENST00000351487 LY6G5BQ8NDX9 201 aa17.66■□□□□ 0.42
UPF3A-201ENST00000351487 SERTAD4Q9NUC0 356 aa17.66■□□□□ 0.42
UPF3A-201ENST00000351487 NAGKQ9UJ70 344 aa17.66■□□□□ 0.42
UPF3A-201ENST00000351487 HYPMO75409 117 aa17.66■□□□□ 0.42
UPF3A-201ENST00000351487 SMIM12Q96EX1 92 aa17.66■□□□□ 0.42
UPF3A-201ENST00000351487 MSRB2Q9Y3D2 182 aa17.66■□□□□ 0.42
UPF3A-201ENST00000351487 SPINK4O60575 86 aa17.65■□□□□ 0.42
UPF3A-201ENST00000351487 SCGB1D1O95968 90 aa17.65■□□□□ 0.42
UPF3A-201ENST00000351487 APELAP0DMC3 54 aa17.65■□□□□ 0.42
UPF3A-201ENST00000351487 BAGE3Q86Y29 109 aa17.65■□□□□ 0.42
UPF3A-201ENST00000351487 SRSF12Q8WXF0 261 aaKnown RBP17.65■□□□□ 0.42
UPF3A-201ENST00000351487 NDUFAF3Q9BU61 184 aa17.65■□□□□ 0.42
UPF3A-201ENST00000351487 FBXL15Q9H469 300 aa17.65■□□□□ 0.42
UPF3A-201ENST00000351487 C7orf69Q9H7B7 122 aa17.65■□□□□ 0.42
UPF3A-201ENST00000351487 EPDR1Q9UM22 224 aa17.65■□□□□ 0.42
UPF3A-201ENST00000351487 DCHS1Q96JQ0 3298 aa17.65■□□□□ 0.42
UPF3A-201ENST00000351487 GP9P14770 177 aa17.64■□□□□ 0.42
UPF3A-201ENST00000351487 SLC35B1P78383 322 aa17.64■□□□□ 0.42
UPF3A-201ENST00000351487 OR10J3Q5JRS4 329 aa17.64■□□□□ 0.42
UPF3A-201ENST00000351487 RASL11AQ6T310 242 aa17.64■□□□□ 0.42
UPF3A-201ENST00000351487 SRSF8Q9BRL6 282 aaKnown RBP17.64■□□□□ 0.42
UPF3A-201ENST00000351487 KLF12Q9Y4X4 402 aa17.64■□□□□ 0.42
UPF3A-201ENST00000351487 TRAV34A0A0B4J273 112 aa17.64■□□□□ 0.41
UPF3A-201ENST00000351487 LIPFP07098 398 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms