RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 BAXQ07812 192 aa17.02■□□□□ 0.31
SDC3-202ENST00000339394 RPEL1Q2QD12 228 aa17.02■□□□□ 0.31
SDC3-202ENST00000339394 FXYD6-FXYD2A0A087WZ82 144 aa17.01■□□□□ 0.31
SDC3-202ENST00000339394 IGHV3-35A0A0C4DH35 117 aa17.01■□□□□ 0.31
SDC3-202ENST00000339394 IGLC1P0CG04 106 aa17.01■□□□□ 0.31
SDC3-202ENST00000339394 ZNF546Q86UE3 836 aa17.01■□□□□ 0.31
SDC3-202ENST00000339394 AKAP14Q86UN6 197 aa17.01■□□□□ 0.31
SDC3-202ENST00000339394 SMCO3A2RU48 225 aa17■□□□□ 0.31
SDC3-202ENST00000339394 FNDC10F2Z333 226 aa17■□□□□ 0.31
SDC3-202ENST00000339394 IGKV1-17P01599 117 aa17■□□□□ 0.31
SDC3-202ENST00000339394 OR10J1P30954 320 aa17■□□□□ 0.31
SDC3-202ENST00000339394 OR5C1Q8NGR4 320 aa17■□□□□ 0.31
SDC3-202ENST00000339394 WNK1Q9H4A3 2382 aa17■□□□□ 0.31
SDC3-202ENST00000339394 IGKV1OR2-108A0A075B7D4 117 aa16.99■□□□□ 0.31
SDC3-202ENST00000339394 TRAV30A0A087WSZ9 112 aa16.99■□□□□ 0.31
SDC3-202ENST00000339394 AKR1C1Q04828 323 aa16.99■□□□□ 0.31
SDC3-202ENST00000339394 KLF5Q13887 457 aaPredicted RBP16.99■□□□□ 0.31
SDC3-202ENST00000339394 TCTE3Q8IZS6 198 aa16.99■□□□□ 0.31
SDC3-202ENST00000339394 LILRB2Q8N423 598 aa16.99■□□□□ 0.31
SDC3-202ENST00000339394 DLX4Q92988 240 aaPredicted RBP16.99■□□□□ 0.31
SDC3-202ENST00000339394 NPVFQ9HCQ7 196 aa16.99■□□□□ 0.31
SDC3-202ENST00000339394 HSPB11Q9Y547 144 aa16.99■□□□□ 0.31
SDC3-202ENST00000339394 TIGITQ495A1 244 aa16.98■□□□□ 0.31
SDC3-202ENST00000339394 TMEM144Q7Z5S9 345 aa16.98■□□□□ 0.31
SDC3-202ENST00000339394 GPHB5Q86YW7 130 aa16.98■□□□□ 0.31
SDC3-202ENST00000339394 LINC00482Q8N8I6 264 aa16.98■□□□□ 0.31
SDC3-202ENST00000339394 INO80EQ8NBZ0 244 aaPredicted RBP16.98■□□□□ 0.31
SDC3-202ENST00000339394 OR11H4Q8NGC9 324 aa16.98■□□□□ 0.31
SDC3-202ENST00000339394 OR1S2Q8NGQ3 325 aa16.98■□□□□ 0.31
SDC3-202ENST00000339394 AQP10Q96PS8 301 aa16.98■□□□□ 0.31
SDC3-202ENST00000339394 TNFSF18Q9UNG2 199 aa16.98■□□□□ 0.31
SDC3-202ENST00000339394 IGKV1D-37A0A075B6S9 117 aa16.98■□□□□ 0.31
SDC3-202ENST00000339394 ZFP92A6NM28 416 aa16.98■□□□□ 0.31
SDC3-202ENST00000339394 SCGB2A1O75556 95 aa16.98■□□□□ 0.31
SDC3-202ENST00000339394 NUP62P37198 522 aaPredicted RBP16.98■□□□□ 0.31
SDC3-202ENST00000339394 SYNJ2BPP57105 145 aa16.98■□□□□ 0.31
SDC3-202ENST00000339394 RELQ04864 619 aaPredicted RBP16.98■□□□□ 0.31
SDC3-202ENST00000339394 ATP6V1FQ16864 119 aa16.98■□□□□ 0.31
SDC3-202ENST00000339394 TREML4Q6UXN2 200 aa16.98■□□□□ 0.31
SDC3-202ENST00000339394 ZNF414Q96IQ9 312 aa16.98■□□□□ 0.31
SDC3-202ENST00000339394 UQCC1Q9NVA1 299 aa16.98■□□□□ 0.31
SDC3-202ENST00000339394 CD300CQ08708 224 aa16.97■□□□□ 0.31
SDC3-202ENST00000339394 VWC2Q2TAL6 325 aa16.97■□□□□ 0.31
SDC3-202ENST00000339394 THAP8Q8NA92 274 aa16.97■□□□□ 0.31
SDC3-202ENST00000339394 RNF222A6NCQ9 220 aa16.96■□□□□ 0.31
SDC3-202ENST00000339394 ZNF90Q03938 601 aa16.96■□□□□ 0.31
SDC3-202ENST00000339394 CLINT1Q14677 625 aa16.96■□□□□ 0.31
SDC3-202ENST00000339394 FAM106AQ4KMX7 169 aa16.96■□□□□ 0.31
SDC3-202ENST00000339394 TMEM147Q9BVK8 224 aa16.96■□□□□ 0.31
SDC3-202ENST00000339394 ARPC5O15511 151 aa16.95■□□□□ 0.3
SDC3-202ENST00000339394 YPEL3P61236 119 aaPredicted RBP16.95■□□□□ 0.3
SDC3-202ENST00000339394 TEPPQ6URK8 271 aa16.95■□□□□ 0.3
SDC3-202ENST00000339394 UNQ9165/PRO28630Q6UXU0 137 aa16.95■□□□□ 0.3
SDC3-202ENST00000339394 ZNF600Q6ZNG1 722 aa16.95■□□□□ 0.3
SDC3-202ENST00000339394 C1QL4Q86Z23 238 aa16.95■□□□□ 0.3
SDC3-202ENST00000339394 NEURL2Q9BR09 285 aa16.95■□□□□ 0.3
SDC3-202ENST00000339394 SMIM3Q9BZL3 60 aa16.95■□□□□ 0.3
SDC3-202ENST00000339394 LSM4Q9Y4Z0 139 aaKnown RBP16.95■□□□□ 0.3
SDC3-202ENST00000339394 ZNF320A2RRD8 509 aa16.94■□□□□ 0.3
SDC3-202ENST00000339394 NDUFA4O00483 81 aa16.94■□□□□ 0.3
SDC3-202ENST00000339394 YIF1AO95070 293 aa16.94■□□□□ 0.3
SDC3-202ENST00000339394 AP2S1P53680 142 aaPredicted RBP16.94■□□□□ 0.3
SDC3-202ENST00000339394 TRGV9Q99603 122 aa16.94■□□□□ 0.3
SDC3-202ENST00000339394 PUS1Q9Y606 427 aaKnown RBP eCLIP16.94■□□□□ 0.3
SDC3-202ENST00000339394 RD3LP0DJH9 198 aa16.94■□□□□ 0.3
SDC3-202ENST00000339394 WFDC9Q8NEX5 89 aa16.94■□□□□ 0.3
SDC3-202ENST00000339394 RCC1LQ96I51 464 aaKnown RBP16.94■□□□□ 0.3
SDC3-202ENST00000339394 IGHV3OR16-8A0A075B7F1 116 aa16.93■□□□□ 0.3
SDC3-202ENST00000339394 UBE2L5PA0A1B0GUS4 154 aa16.93■□□□□ 0.3
SDC3-202ENST00000339394 HMSDA8MTL9 139 aa16.93■□□□□ 0.3
SDC3-202ENST00000339394 LGALS9O00182 355 aa16.93■□□□□ 0.3
SDC3-202ENST00000339394 OVOL1O14753 267 aa16.93■□□□□ 0.3
SDC3-202ENST00000339394 PSG1P11464 419 aa16.93■□□□□ 0.3
SDC3-202ENST00000339394 TOMM20LQ6UXN7 152 aa16.93■□□□□ 0.3
SDC3-202ENST00000339394 Q8WTZ3 238 aa16.93■□□□□ 0.3
SDC3-202ENST00000339394 ATP5SQ99766 215 aa16.93■□□□□ 0.3
SDC3-202ENST00000339394 WDR83OSQ9Y284 106 aa16.93■□□□□ 0.3
SDC3-202ENST00000339394 CMYA5Q8N3K9 4069 aa16.92■□□□□ 0.3
SDC3-202ENST00000339394 TOMM40O96008 361 aa16.92■□□□□ 0.3
SDC3-202ENST00000339394 PRR31Q5SQ13 230 aa16.92■□□□□ 0.3
SDC3-202ENST00000339394 REC114Q7Z4M0 266 aa16.92■□□□□ 0.3
SDC3-202ENST00000339394 OR9G4Q8NGQ1 327 aa16.92■□□□□ 0.3
SDC3-202ENST00000339394 TMEM190Q8WZ59 177 aa16.92■□□□□ 0.3
SDC3-202ENST00000339394 MFFQ9GZY8 342 aa16.92■□□□□ 0.3
SDC3-202ENST00000339394 FBXL17Q9UF56 701 aa16.92■□□□□ 0.3
SDC3-202ENST00000339394 PKD1L1Q8TDX9 2849 aa16.92■□□□□ 0.3
SDC3-202ENST00000339394 C1QBP02746 253 aa16.91■□□□□ 0.3
SDC3-202ENST00000339394 CD33P20138 364 aa16.91■□□□□ 0.3
SDC3-202ENST00000339394 BTNL8Q6UX41 500 aa16.91■□□□□ 0.3
SDC3-202ENST00000339394 TMEM182Q6ZP80 229 aaPredicted RBP16.91■□□□□ 0.3
SDC3-202ENST00000339394 C20orf24Q9BUV8 137 aa16.91■□□□□ 0.3
SDC3-202ENST00000339394 ZFAND3Q9H8U3 227 aa16.91■□□□□ 0.3
SDC3-202ENST00000339394 WFDC1Q9HC57 220 aa16.91■□□□□ 0.3
SDC3-202ENST00000339394 DFFBO76075 338 aa16.9■□□□□ 0.3
SDC3-202ENST00000339394 FABP1P07148 127 aa16.9■□□□□ 0.3
SDC3-202ENST00000339394 OR2F1Q13607 317 aa16.9■□□□□ 0.3
SDC3-202ENST00000339394 MGST2Q99735 147 aa16.9■□□□□ 0.3
SDC3-202ENST00000339394 AGPAT2O15120 278 aa16.89■□□□□ 0.3
SDC3-202ENST00000339394 GATA2P23769 480 aaPredicted RBP16.89■□□□□ 0.3
SDC3-202ENST00000339394 TM4SF20Q53R12 229 aa16.89■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms