RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 OR8G2PQ6IF36 304 aa14.09□□□□□ -0.15
HMGA1-201ENST00000311487 TMEM182Q6ZP80 229 aaPredicted RBP14.09□□□□□ -0.15
HMGA1-201ENST00000311487 HAPLN4Q86UW8 402 aa14.09□□□□□ -0.15
HMGA1-201ENST00000311487 ZNF491Q8N8L2 437 aa14.09□□□□□ -0.15
HMGA1-201ENST00000311487 NARS2Q96I59 477 aaKnown RBP14.09□□□□□ -0.15
HMGA1-201ENST00000311487 WNK1Q9H4A3 2382 aa14.08□□□□□ -0.15
HMGA1-201ENST00000311487 MT-CO2P00403 227 aa14.08□□□□□ -0.16
HMGA1-201ENST00000311487 OPRK1P41145 380 aa14.08□□□□□ -0.16
HMGA1-201ENST00000311487 FHITP49789 147 aa14.08□□□□□ -0.16
HMGA1-201ENST00000311487 ARL16Q0P5N6 197 aa14.08□□□□□ -0.16
HMGA1-201ENST00000311487 BSXQ3C1V8 233 aa14.08□□□□□ -0.16
HMGA1-201ENST00000311487 C8orf86Q6ZUL3 223 aa14.08□□□□□ -0.16
HMGA1-201ENST00000311487 KLHL30-AS1Q8NEE0 82 aa14.08□□□□□ -0.16
HMGA1-201ENST00000311487 FNDC4Q9H6D8 234 aaPredicted RBP14.08□□□□□ -0.16
HMGA1-201ENST00000311487 STRAPQ9Y3F4 350 aaKnown RBP14.08□□□□□ -0.16
HMGA1-201ENST00000311487 VWFP04275 2813 aa14.08□□□□□ -0.16
HMGA1-201ENST00000311487 TMEM218A2RU14 115 aa14.07□□□□□ -0.16
HMGA1-201ENST00000311487 INS-IGF2F8WCM5 200 aa14.07□□□□□ -0.16
HMGA1-201ENST00000311487 DFFBO76075 338 aa14.07□□□□□ -0.16
HMGA1-201ENST00000311487 CAMLGP49069 296 aa14.07□□□□□ -0.16
HMGA1-201ENST00000311487 SUB1P53999 127 aaKnown RBP eCLIP14.07□□□□□ -0.165e-8■□□□□ 8.7
HMGA1-201ENST00000311487 ATP5G2Q06055 141 aa14.07□□□□□ -0.16
HMGA1-201ENST00000311487 ZNF114Q8NC26 417 aa14.07□□□□□ -0.16
HMGA1-201ENST00000311487 NECAP1Q8NC96 275 aa14.07□□□□□ -0.16
HMGA1-201ENST00000311487 OR2G3Q8NGZ4 309 aa14.07□□□□□ -0.16
HMGA1-201ENST00000311487 CIB3Q96Q77 187 aaPredicted RBP14.07□□□□□ -0.16
HMGA1-201ENST00000311487 MRPL36Q9P0J6 103 aaKnown RBP14.07□□□□□ -0.16
HMGA1-201ENST00000311487 K7EIM0 57 aa14.07□□□□□ -0.16
HMGA1-201ENST00000311487 OR8U8P0C7N1 319 aa14.07□□□□□ -0.16
HMGA1-201ENST00000311487 C2orf83Q53S99 150 aa14.07□□□□□ -0.16
HMGA1-201ENST00000311487 CITED1Q99966 193 aa14.07□□□□□ -0.16
HMGA1-201ENST00000311487 TMEM231Q9H6L2 316 aa14.07□□□□□ -0.16
HMGA1-201ENST00000311487 PPP5D1E7EU14 171 aa14.06□□□□□ -0.16
HMGA1-201ENST00000311487 APOC3P02656 99 aa14.06□□□□□ -0.16
HMGA1-201ENST00000311487 RUNX1Q01196 453 aa14.06□□□□□ -0.16
HMGA1-201ENST00000311487 ZNF616Q08AN1 781 aa14.06□□□□□ -0.16
HMGA1-201ENST00000311487 TMEM14EPQ6UXP3 125 aa14.06□□□□□ -0.16
HMGA1-201ENST00000311487 ETV3LQ6ZN32 361 aa14.06□□□□□ -0.16
HMGA1-201ENST00000311487 GNPNAT1Q96EK6 184 aaPredicted RBP14.06□□□□□ -0.16
HMGA1-201ENST00000311487 IGHV3-35A0A0C4DH35 117 aa14.05□□□□□ -0.16
HMGA1-201ENST00000311487 ADARB2-AS1A8MUL3 147 aa14.05□□□□□ -0.16
HMGA1-201ENST00000311487 I3L2K1 104 aa14.05□□□□□ -0.16
HMGA1-201ENST00000311487 ATF4P18848 351 aaPredicted RBP14.05□□□□□ -0.16
HMGA1-201ENST00000311487 CLEC19AQ6UXS0 136 aa14.05□□□□□ -0.16
HMGA1-201ENST00000311487 COMMD1Q8N668 190 aa14.05□□□□□ -0.16
HMGA1-201ENST00000311487 RNF152Q8N8N0 203 aa14.05□□□□□ -0.16
HMGA1-201ENST00000311487 TSSC4Q9Y5U2 329 aaPredicted RBP14.05□□□□□ -0.16
HMGA1-201ENST00000311487 OR2T8A6NH00 312 aa14.05□□□□□ -0.16
HMGA1-201ENST00000311487 AGPAT2O15120 278 aa14.05□□□□□ -0.16
HMGA1-201ENST00000311487 ADCYAP1P18509 176 aa14.05□□□□□ -0.16
HMGA1-201ENST00000311487 CCDC140Q96MF4 163 aa14.05□□□□□ -0.16
HMGA1-201ENST00000311487 TREM1Q9NP99 234 aa14.05□□□□□ -0.16
HMGA1-201ENST00000311487 UMAD1C9J7I0 102 aa14.04□□□□□ -0.16
HMGA1-201ENST00000311487 H3BUA1 57 aa14.04□□□□□ -0.16
HMGA1-201ENST00000311487 TSPAN15O95858 294 aa14.04□□□□□ -0.16
HMGA1-201ENST00000311487 IFNA5P01569 189 aa14.04□□□□□ -0.16
HMGA1-201ENST00000311487 HBG1P69891 147 aa14.04□□□□□ -0.16
HMGA1-201ENST00000311487 HBG2P69892 147 aa14.04□□□□□ -0.16
HMGA1-201ENST00000311487 FAM213BQ8TBF2 198 aa14.04□□□□□ -0.16
HMGA1-201ENST00000311487 MYOZ3Q8TDC0 251 aa14.04□□□□□ -0.16
HMGA1-201ENST00000311487 UBE2E2Q96LR5 201 aa14.04□□□□□ -0.16
HMGA1-201ENST00000311487 ZNF747Q9BV97 191 aa14.04□□□□□ -0.16
HMGA1-201ENST00000311487 THYN1Q9P016 225 aa14.04□□□□□ -0.16
HMGA1-201ENST00000311487 FAM223BA6NKX1 122 aa14.03□□□□□ -0.16
HMGA1-201ENST00000311487 CLEC3BP05452 202 aa14.03□□□□□ -0.16
HMGA1-201ENST00000311487 HIST1H1BP16401 226 aaKnown RBP14.03□□□□□ -0.16
HMGA1-201ENST00000311487 GPR183P32249 361 aa14.03□□□□□ -0.16
HMGA1-201ENST00000311487 RAB11AP62491 216 aa14.03□□□□□ -0.16
HMGA1-201ENST00000311487 S100A12P80511 92 aa14.03□□□□□ -0.16
HMGA1-201ENST00000311487 ACSM6Q6P461 480 aa14.03□□□□□ -0.16
HMGA1-201ENST00000311487 FAM223AQ8IWN6 122 aa14.03□□□□□ -0.16
HMGA1-201ENST00000311487 ACY3Q96HD9 319 aa14.03□□□□□ -0.16
HMGA1-201ENST00000311487 UQCC1Q9NVA1 299 aa14.03□□□□□ -0.16
HMGA1-201ENST00000311487 CD5P06127 495 aa14.03□□□□□ -0.16
HMGA1-201ENST00000311487 RPP30P78346 268 aaKnown RBP14.03□□□□□ -0.16
HMGA1-201ENST00000311487 Q56UQ5 140 aa14.03□□□□□ -0.16
HMGA1-201ENST00000311487 ATRAIDQ6UW56 229 aa14.03□□□□□ -0.16
HMGA1-201ENST00000311487 A0A0G2JLM5 398 aa14.02□□□□□ -0.16
HMGA1-201ENST00000311487 PMS2P5A8MQ11 134 aa14.02□□□□□ -0.16
HMGA1-201ENST00000311487 CYB5BO43169 146 aa14.02□□□□□ -0.16
HMGA1-201ENST00000311487 CDX1P47902 265 aaPredicted RBP14.02□□□□□ -0.16
HMGA1-201ENST00000311487 SLC38A11Q08AI6 406 aa14.02□□□□□ -0.16
HMGA1-201ENST00000311487 C10orf91Q5T1B1 145 aa14.02□□□□□ -0.16
HMGA1-201ENST00000311487 LILRB2Q8N423 598 aa14.02□□□□□ -0.16
HMGA1-201ENST00000311487 OR11H1Q8NG94 326 aa14.02□□□□□ -0.16
HMGA1-201ENST00000311487 OR1L6Q8NGR2 347 aa14.02□□□□□ -0.16
HMGA1-201ENST00000311487 USMG5Q96IX5 58 aa14.02□□□□□ -0.16
HMGA1-201ENST00000311487 C21orf62Q9NYP8 219 aa14.02□□□□□ -0.16
HMGA1-201ENST00000311487 SMCO3A2RU48 225 aa14.02□□□□□ -0.17
HMGA1-201ENST00000311487 F8W735 103 aaPredicted RBP14.02□□□□□ -0.17
HMGA1-201ENST00000311487 PVRIGQ6DKI7 326 aa14.02□□□□□ -0.17
HMGA1-201ENST00000311487 EEF1AKMT3Q96AZ1 226 aa14.02□□□□□ -0.17
HMGA1-201ENST00000311487 IGHV4OR15-8A0A075B7B6 117 aa14.01□□□□□ -0.17
HMGA1-201ENST00000311487 IGHV3OR16-8A0A075B7F1 116 aa14.01□□□□□ -0.17
HMGA1-201ENST00000311487 A0A087WW49 117 aa14.01□□□□□ -0.17
HMGA1-201ENST00000311487 RND2P52198 227 aa14.01□□□□□ -0.17
HMGA1-201ENST00000311487 ZNF502Q8TBZ5 544 aa14.01□□□□□ -0.17
HMGA1-201ENST00000311487 SCGB1C1Q8TD33 95 aa14.01□□□□□ -0.17
HMGA1-201ENST00000311487 C4orf3Q8WVX3 66 aa14.01□□□□□ -0.17
HMGA1-201ENST00000311487 NPIPB3Q92617 1050 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms