RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 BATF3Q9NR55 127 aa12.1□□□□□ -0.47
LSM1-201ENST00000311351 RYR2Q92736 4967 aa12.1□□□□□ -0.47
LSM1-201ENST00000311351 IGLC1P0CG04 106 aa12.09□□□□□ -0.47
LSM1-201ENST00000311351 PPP1R1AQ13522 171 aa12.09□□□□□ -0.47
LSM1-201ENST00000311351 APRG1Q8IVJ8 170 aa12.09□□□□□ -0.47
LSM1-201ENST00000311351 OR1S1Q8NH92 325 aa12.09□□□□□ -0.47
LSM1-201ENST00000311351 C7orf50Q9BRJ6 194 aaKnown RBP12.09□□□□□ -0.47
LSM1-201ENST00000311351 CACFD1Q9UGQ2 172 aa12.09□□□□□ -0.47
LSM1-201ENST00000311351 A6NHS1 94 aa12.08□□□□□ -0.48
LSM1-201ENST00000311351 SCGB2A1O75556 95 aa12.08□□□□□ -0.48
LSM1-201ENST00000311351 DFFBO76075 338 aa12.08□□□□□ -0.48
LSM1-201ENST00000311351 IFNA10P01566 189 aa12.08□□□□□ -0.48
LSM1-201ENST00000311351 SLC25A4P12235 298 aa12.08□□□□□ -0.48
LSM1-201ENST00000311351 RPL35AP18077 110 aaKnown RBP12.08□□□□□ -0.48
LSM1-201ENST00000311351 BMI1P35226 326 aa12.08□□□□□ -0.48
LSM1-201ENST00000311351 RBMS2Q15434 407 aaKnown RBP12.08□□□□□ -0.48
LSM1-201ENST00000311351 CENPSQ8N2Z9 138 aa12.08□□□□□ -0.48
LSM1-201ENST00000311351 SDHCQ99643 169 aaPredicted RBP12.08□□□□□ -0.48
LSM1-201ENST00000311351 MAP6D1Q9H9H5 199 aa12.08□□□□□ -0.48
LSM1-201ENST00000311351 TENM2Q9NT68 2774 aa12.08□□□□□ -0.48
LSM1-201ENST00000311351 LINC00854A0A1B0GVQ3 168 aa12.07□□□□□ -0.48
LSM1-201ENST00000311351 DUXBA0A1W2PPF3 345 aa12.07□□□□□ -0.48
LSM1-201ENST00000311351 SFT2D2O95562 160 aa12.07□□□□□ -0.48
LSM1-201ENST00000311351 OR10J1P30954 320 aa12.07□□□□□ -0.48
LSM1-201ENST00000311351 WFDC3Q8IUB2 231 aa12.07□□□□□ -0.48
LSM1-201ENST00000311351 LRTM2Q8N967 370 aa12.07□□□□□ -0.48
LSM1-201ENST00000311351 OR1S2Q8NGQ3 325 aa12.07□□□□□ -0.48
LSM1-201ENST00000311351 S100ZQ8WXG8 99 aa12.07□□□□□ -0.48
LSM1-201ENST00000311351 ACY3Q96HD9 319 aa12.07□□□□□ -0.48
LSM1-201ENST00000311351 OVOL2Q9BRP0 275 aa12.07□□□□□ -0.48
LSM1-201ENST00000311351 SACSQ9NZJ4 4579 aa12.07□□□□□ -0.48
LSM1-201ENST00000311351 TRAV30A0A087WSZ9 112 aa12.06□□□□□ -0.48
LSM1-201ENST00000311351 PITX3O75364 302 aa12.06□□□□□ -0.48
LSM1-201ENST00000311351 IAPPP10997 89 aa12.06□□□□□ -0.48
LSM1-201ENST00000311351 NPPCP23582 126 aa12.06□□□□□ -0.48
LSM1-201ENST00000311351 RPL11P62913 178 aaKnown RBP12.06□□□□□ -0.48
LSM1-201ENST00000311351 DEFB135Q30KP9 77 aa12.06□□□□□ -0.48
LSM1-201ENST00000311351 CNPY1Q3B7I2 92 aa12.06□□□□□ -0.48
LSM1-201ENST00000311351 FAM24BQ8N5W8 94 aa12.06□□□□□ -0.48
LSM1-201ENST00000311351 NPIPB3Q92617 1050 aa12.06□□□□□ -0.48
LSM1-201ENST00000311351 METTL26Q96S19 204 aa12.06□□□□□ -0.48
LSM1-201ENST00000311351 MS4A6AQ9H2W1 248 aa12.06□□□□□ -0.48
LSM1-201ENST00000311351 HOXB5P09067 269 aa12.05□□□□□ -0.48
LSM1-201ENST00000311351 IL7P13232 177 aa12.05□□□□□ -0.48
LSM1-201ENST00000311351 CRYBB3P26998 211 aa12.05□□□□□ -0.48
LSM1-201ENST00000311351 P2RY1P47900 373 aa12.05□□□□□ -0.48
LSM1-201ENST00000311351 APOC4P55056 127 aa12.05□□□□□ -0.48
LSM1-201ENST00000311351 UBE2MP61081 183 aaKnown RBP12.05□□□□□ -0.48
LSM1-201ENST00000311351 ETFRF1Q6IPR1 90 aa12.05□□□□□ -0.48
LSM1-201ENST00000311351 NOXA1Q86UR1 476 aa12.05□□□□□ -0.48
LSM1-201ENST00000311351 CCDC32Q9BV29 185 aa12.05□□□□□ -0.48
LSM1-201ENST00000311351 TMEM231Q9H6L2 316 aa12.05□□□□□ -0.48
LSM1-201ENST00000311351 PTTG2Q9NZH5 202 aa12.05□□□□□ -0.48
LSM1-201ENST00000311351 FLVCR2Q9UPI3 526 aa12.05□□□□□ -0.48
LSM1-201ENST00000311351 U3KQ87 197 aa12.05□□□□□ -0.48
LSM1-201ENST00000311351 NDUFB6O95139 128 aa12.04□□□□□ -0.48
LSM1-201ENST00000311351 IFNA4P05014 189 aa12.04□□□□□ -0.48
LSM1-201ENST00000311351 BTCP35070 178 aa12.04□□□□□ -0.48
LSM1-201ENST00000311351 PAFAH1B2P68402 229 aa12.04□□□□□ -0.48
LSM1-201ENST00000311351 USF2Q15853 346 aaPredicted RBP12.04□□□□□ -0.48
LSM1-201ENST00000311351 RABAC1Q9UI14 185 aa12.04□□□□□ -0.48
LSM1-201ENST00000311351 A0A1W2PS18 150 aa12.03□□□□□ -0.48
LSM1-201ENST00000311351 DNASE2O00115 360 aaPredicted RBP12.03□□□□□ -0.48
LSM1-201ENST00000311351 IL4P05112 153 aa12.03□□□□□ -0.48
LSM1-201ENST00000311351 CD5P06127 495 aa12.03□□□□□ -0.48
LSM1-201ENST00000311351 YPEL3P61236 119 aaPredicted RBP12.03□□□□□ -0.48
LSM1-201ENST00000311351 GGNBP1Q5YKI7 109 aa12.03□□□□□ -0.48
LSM1-201ENST00000311351 STXBP6Q8NFX7 210 aa12.03□□□□□ -0.48
LSM1-201ENST00000311351 Q8WTZ3 238 aa12.03□□□□□ -0.48
LSM1-201ENST00000311351 MAGT1Q9H0U3 335 aa12.03□□□□□ -0.48
LSM1-201ENST00000311351 TMED3Q9Y3Q3 217 aa12.03□□□□□ -0.48
LSM1-201ENST00000311351 AGRNO00468 2067 aa12.02□□□□□ -0.48
LSM1-201ENST00000311351 KIR2DL5BA0A0G2JN68 375 aa12.02□□□□□ -0.49
LSM1-201ENST00000311351 KIR2DL5BA0A0G2JPC4 375 aa12.02□□□□□ -0.49
LSM1-201ENST00000311351 C9orf170A2RU37 121 aa12.02□□□□□ -0.49
LSM1-201ENST00000311351 ADAP1O75689 374 aa12.02□□□□□ -0.49
LSM1-201ENST00000311351 TOMM40O96008 361 aa12.02□□□□□ -0.49
LSM1-201ENST00000311351 HNRNPCP07910 306 aaKnown RBP eCLIP12.02□□□□□ -0.49
LSM1-201ENST00000311351 SLC25A6P12236 298 aa12.02□□□□□ -0.49
LSM1-201ENST00000311351 DEFB131AP59861 70 aa12.02□□□□□ -0.49
LSM1-201ENST00000311351 LEMD1Q68G75 181 aa12.02□□□□□ -0.49
LSM1-201ENST00000311351 Q6ZWC4 215 aa12.02□□□□□ -0.49
LSM1-201ENST00000311351 KIR2DL5AQ8N109 375 aa12.02□□□□□ -0.49
LSM1-201ENST00000311351 STPG3Q8N7X2 389 aa12.02□□□□□ -0.49
LSM1-201ENST00000311351 KIR2DL5BQ8NHK3 375 aa12.02□□□□□ -0.49
LSM1-201ENST00000311351 NARS2Q96I59 477 aaKnown RBP12.02□□□□□ -0.49
LSM1-201ENST00000311351 LYSTQ99698 3801 aa12.02□□□□□ -0.49
LSM1-201ENST00000311351 WDR12Q9GZL7 423 aaKnown RBP12.02□□□□□ -0.49
LSM1-201ENST00000311351 PAIP2BQ9ULR5 123 aaKnown RBP12.02□□□□□ -0.49
LSM1-201ENST00000311351 U3KQE9 123 aa12.02□□□□□ -0.49
LSM1-201ENST00000311351 TRAV2A0A0B4J234 112 aa12.01□□□□□ -0.49
LSM1-201ENST00000311351 FAM90A26D6RGX4 464 aa12.01□□□□□ -0.49
LSM1-201ENST00000311351 UBE2CO00762 179 aa12.01□□□□□ -0.49
LSM1-201ENST00000311351 SPRY2O43597 315 aa12.01□□□□□ -0.49
LSM1-201ENST00000311351 PSG1P11464 419 aa12.01□□□□□ -0.49
LSM1-201ENST00000311351 ANXA7P20073 488 aaKnown RBP12.01□□□□□ -0.49
LSM1-201ENST00000311351 CMC4P56277 68 aaPredicted RBP12.01□□□□□ -0.49
LSM1-201ENST00000311351 GLMPQ8WWB7 406 aa12.01□□□□□ -0.49
LSM1-201ENST00000311351 SLC35E1Q96K37 410 aa12.01□□□□□ -0.49
LSM1-201ENST00000311351 TP53TG1Q9Y2A0 90 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 100.2 ms