RNA–Protein interactions for RNA: ENST00000299847.6

CHRFAM7A-201, Transcript of CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHRFAM7A, Length 6,220 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRFAM7A-201ENST00000299847 BRCA1P38398 1863 aaKnown RBP11.24□□□□□ -0.61
CHRFAM7A-201ENST00000299847 TRAV3A0A0B4J244 114 aa11.23□□□□□ -0.61
CHRFAM7A-201ENST00000299847 A8MXK9 166 aa11.23□□□□□ -0.61
CHRFAM7A-201ENST00000299847 SAP30O75446 220 aa11.23□□□□□ -0.61
CHRFAM7A-201ENST00000299847 FLVCR1-AS1Q8TAF5 88 aa11.23□□□□□ -0.61
CHRFAM7A-201ENST00000299847 SPACA3Q8IXA5 215 aa11.23□□□□□ -0.61
CHRFAM7A-201ENST00000299847 CACNG8Q8WXS5 425 aa11.23□□□□□ -0.61
CHRFAM7A-201ENST00000299847 SCRT1Q9BWW7 348 aa11.23□□□□□ -0.61
CHRFAM7A-201ENST00000299847 LYPD3O95274 346 aa11.23□□□□□ -0.61
CHRFAM7A-201ENST00000299847 CHCHD5Q9BSY4 110 aa11.23□□□□□ -0.61
CHRFAM7A-201ENST00000299847 IGKV1-12A0A0C4DH73 117 aa11.23□□□□□ -0.61
CHRFAM7A-201ENST00000299847 C5orf63A6NC05 138 aa11.23□□□□□ -0.61
CHRFAM7A-201ENST00000299847 IGKV1D-12P01611 117 aa11.23□□□□□ -0.61
CHRFAM7A-201ENST00000299847 SRSF7Q16629 238 aaKnown RBP eCLIP11.23□□□□□ -0.61
CHRFAM7A-201ENST00000299847 CRPP02741 224 aa11.23□□□□□ -0.61
CHRFAM7A-201ENST00000299847 ATP5IP56385 69 aaPredicted RBP11.23□□□□□ -0.61
CHRFAM7A-201ENST00000299847 ERVK11-1P61568 191 aa11.23□□□□□ -0.61
CHRFAM7A-201ENST00000299847 PAX8Q06710 450 aa11.23□□□□□ -0.61
CHRFAM7A-201ENST00000299847 KLF17Q5JT82 389 aaPredicted RBP11.23□□□□□ -0.61
CHRFAM7A-201ENST00000299847 KLHDC3Q9BQ90 382 aa11.23□□□□□ -0.61
CHRFAM7A-201ENST00000299847 HBDP02042 147 aa11.22□□□□□ -0.61
CHRFAM7A-201ENST00000299847 SRSF1Q07955 248 aaKnown RBP eCLIP11.22□□□□□ -0.61
CHRFAM7A-201ENST00000299847 ADARB2-AS1A8MUL3 147 aa11.22□□□□□ -0.61
CHRFAM7A-201ENST00000299847 GTSCR1Q86UQ5 136 aa11.22□□□□□ -0.61
CHRFAM7A-201ENST00000299847 DUTP33316 252 aaKnown RBP11.22□□□□□ -0.61
CHRFAM7A-201ENST00000299847 TMEM200BQ69YZ2 307 aa11.22□□□□□ -0.61
CHRFAM7A-201ENST00000299847 RNF144BQ7Z419 303 aa11.22□□□□□ -0.61
CHRFAM7A-201ENST00000299847 OR9G4Q8NGQ1 327 aa11.22□□□□□ -0.61
CHRFAM7A-201ENST00000299847 ZNF581Q9P0T4 197 aa11.22□□□□□ -0.61
CHRFAM7A-201ENST00000299847 RPUSD1Q9UJJ7 312 aaKnown RBP11.22□□□□□ -0.61
CHRFAM7A-201ENST00000299847 SCN4AP35499 1836 aa11.22□□□□□ -0.61
CHRFAM7A-201ENST00000299847 HEATR5BQ9P2D3 2071 aa11.22□□□□□ -0.61
CHRFAM7A-201ENST00000299847 C19orf67A6NJJ6 358 aa11.22□□□□□ -0.61
CHRFAM7A-201ENST00000299847 PMS2P5A8MQ11 134 aa11.22□□□□□ -0.61
CHRFAM7A-201ENST00000299847 LILRA1O75019 489 aa11.22□□□□□ -0.61
CHRFAM7A-201ENST00000299847 LY6HO94772 140 aa11.22□□□□□ -0.61
CHRFAM7A-201ENST00000299847 TIMP3P35625 211 aa11.22□□□□□ -0.61
CHRFAM7A-201ENST00000299847 LINC00158P58513 81 aa11.22□□□□□ -0.61
CHRFAM7A-201ENST00000299847 TMEM170AQ8WVE7 144 aa11.22□□□□□ -0.61
CHRFAM7A-201ENST00000299847 CFHR1Q03591 330 aa11.21□□□□□ -0.61
CHRFAM7A-201ENST00000299847 IGKV1-27A0A075B6S5 117 aa11.21□□□□□ -0.61
CHRFAM7A-201ENST00000299847 SVILO95425 2214 aa11.21□□□□□ -0.61
CHRFAM7A-201ENST00000299847 A0A087WWC5 75 aa11.21□□□□□ -0.61
CHRFAM7A-201ENST00000299847 IGHV2-26A0A0B4J1V2 119 aa11.21□□□□□ -0.61
CHRFAM7A-201ENST00000299847 DPM2O94777 84 aa11.21□□□□□ -0.61
CHRFAM7A-201ENST00000299847 TDGF1P3P51864 188 aa11.21□□□□□ -0.61
CHRFAM7A-201ENST00000299847 PVRIGQ6DKI7 326 aa11.21□□□□□ -0.61
CHRFAM7A-201ENST00000299847 FAM90A1Q86YD7 464 aa11.21□□□□□ -0.61
CHRFAM7A-201ENST00000299847 C8orf46Q8TAG6 207 aa11.21□□□□□ -0.61
CHRFAM7A-201ENST00000299847 VGLL1Q99990 258 aa11.21□□□□□ -0.61
CHRFAM7A-201ENST00000299847 NXT2Q9NPJ8 142 aaKnown RBP11.21□□□□□ -0.61
CHRFAM7A-201ENST00000299847 LAMTOR2Q9Y2Q5 125 aa11.21□□□□□ -0.61
CHRFAM7A-201ENST00000299847 IGKCP01834 107 aa11.21□□□□□ -0.62
CHRFAM7A-201ENST00000299847 RP1L1Q8IWN7 2480 aaPredicted RBP11.21□□□□□ -0.62
CHRFAM7A-201ENST00000299847 HOXA3O43365 443 aaPredicted RBP11.21□□□□□ -0.62
CHRFAM7A-201ENST00000299847 EFNA2O43921 213 aa11.21□□□□□ -0.62
CHRFAM7A-201ENST00000299847 PRDM13Q9H4Q3 707 aa11.21□□□□□ -0.62
CHRFAM7A-201ENST00000299847 RP1P56715 2156 aa11.2□□□□□ -0.62
CHRFAM7A-201ENST00000299847 TCRAP04437 139 aa11.2□□□□□ -0.62
CHRFAM7A-201ENST00000299847 CXCL1P09341 107 aa11.2□□□□□ -0.62
CHRFAM7A-201ENST00000299847 RNF182Q8N6D2 247 aa11.2□□□□□ -0.62
CHRFAM7A-201ENST00000299847 BMPERQ8N8U9 685 aa11.2□□□□□ -0.62
CHRFAM7A-201ENST00000299847 Q8TAT8 98 aa11.2□□□□□ -0.62
CHRFAM7A-201ENST00000299847 F8VVB4 439 aa11.2□□□□□ -0.62
CHRFAM7A-201ENST00000299847 F8VWA3 439 aa11.2□□□□□ -0.62
CHRFAM7A-201ENST00000299847 DOCK3Q8IZD9 2030 aa11.2□□□□□ -0.62
CHRFAM7A-201ENST00000299847 SLC25A20O43772 301 aa11.2□□□□□ -0.62
CHRFAM7A-201ENST00000299847 GNLYP22749 145 aa11.2□□□□□ -0.62
CHRFAM7A-201ENST00000299847 PRCDQ00LT1 54 aa11.2□□□□□ -0.62
CHRFAM7A-201ENST00000299847 DEFB121Q5J5C9 76 aa11.2□□□□□ -0.62
CHRFAM7A-201ENST00000299847 MCRIP2Q9BUT9 160 aaKnown RBP11.2□□□□□ -0.62
CHRFAM7A-201ENST00000299847 SLC25A15Q9Y619 301 aa11.2□□□□□ -0.62
CHRFAM7A-201ENST00000299847 TRAV41A0A0B4J266 112 aa11.2□□□□□ -0.62
CHRFAM7A-201ENST00000299847 WNT2P09544 360 aa11.2□□□□□ -0.62
CHRFAM7A-201ENST00000299847 C15orf32Q32M92 178 aa11.2□□□□□ -0.62
CHRFAM7A-201ENST00000299847 NRN1LQ496H8 165 aa11.2□□□□□ -0.62
CHRFAM7A-201ENST00000299847 ZNF672Q499Z4 452 aaPredicted RBP11.2□□□□□ -0.62
CHRFAM7A-201ENST00000299847 UBE2DNLQ8IWF7 75 aa11.19□□□□□ -0.62
CHRFAM7A-201ENST00000299847 SLC50A1Q9BRV3 221 aa11.19□□□□□ -0.62
CHRFAM7A-201ENST00000299847 DOCK4Q8N1I0 1966 aa11.19□□□□□ -0.62
CHRFAM7A-201ENST00000299847 TMEM8BA6NDV4 472 aa11.19□□□□□ -0.62
CHRFAM7A-201ENST00000299847 ZNF883P0CG24 379 aa11.19□□□□□ -0.62
CHRFAM7A-201ENST00000299847 C1orf122Q6ZSJ8 110 aa11.19□□□□□ -0.62
CHRFAM7A-201ENST00000299847 CD177Q8N6Q3 437 aa11.19□□□□□ -0.62
CHRFAM7A-201ENST00000299847 TMEM249Q2WGJ8 235 aa11.19□□□□□ -0.62
CHRFAM7A-201ENST00000299847 ACTL10Q5JWF8 245 aa11.19□□□□□ -0.62
CHRFAM7A-201ENST00000299847 Q6AWC8 147 aa11.19□□□□□ -0.62
CHRFAM7A-201ENST00000299847 GATD1Q8NB37 220 aa11.19□□□□□ -0.62
CHRFAM7A-201ENST00000299847 ASXL3Q9C0F0 2248 aa11.19□□□□□ -0.62
CHRFAM7A-201ENST00000299847 ZNF329Q86UD4 541 aa11.19□□□□□ -0.62
CHRFAM7A-201ENST00000299847 UBE2E2Q96LR5 201 aa11.19□□□□□ -0.62
CHRFAM7A-201ENST00000299847 CYSLTR1Q9Y271 337 aa11.19□□□□□ -0.62
CHRFAM7A-201ENST00000299847 MBNL3Q9NUK0 354 aaKnown RBP11.19□□□□□ -0.62
CHRFAM7A-201ENST00000299847 NEUROG3Q9Y4Z2 214 aa11.19□□□□□ -0.62
CHRFAM7A-201ENST00000299847 D6R8Y8 96 aa11.18□□□□□ -0.62
CHRFAM7A-201ENST00000299847 TRAV8-4A0A0B4J246 113 aa11.18□□□□□ -0.62
CHRFAM7A-201ENST00000299847 A0A1B0GW15 77 aa11.18□□□□□ -0.62
CHRFAM7A-201ENST00000299847 HIST1H2BKO60814 126 aa11.18□□□□□ -0.62
CHRFAM7A-201ENST00000299847 HIST1H2BJP06899 126 aa11.18□□□□□ -0.62
CHRFAM7A-201ENST00000299847 LINC00271P0C7V0 271 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms