RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 SSMEM1Q8WWF3 244 aa13.48□□□□□ -0.25
CPSF4-201ENST00000292476 SFRP2Q96HF1 295 aa13.48□□□□□ -0.25
CPSF4-201ENST00000292476 HIST1H2BLQ99880 126 aa13.48□□□□□ -0.25
CPSF4-201ENST00000292476 SIRPDQ9H106 197 aa13.48□□□□□ -0.25
CPSF4-201ENST00000292476 LPAR2Q9HBW0 351 aa13.48□□□□□ -0.25
CPSF4-201ENST00000292476 TMEM167BQ9NRX6 74 aa13.48□□□□□ -0.25
CPSF4-201ENST00000292476 LINC00869P0C866 280 aa13.47□□□□□ -0.25
CPSF4-201ENST00000292476 CLEC12BQ2HXU8 276 aa13.47□□□□□ -0.25
CPSF4-201ENST00000292476 Q5PR19 223 aa13.47□□□□□ -0.25
CPSF4-201ENST00000292476 MOB3BQ86TA1 216 aa13.47□□□□□ -0.25
CPSF4-201ENST00000292476 KRTAP1-3Q8IUG1 177 aa13.47□□□□□ -0.25
CPSF4-201ENST00000292476 OR5R1Q8NH85 324 aa13.47□□□□□ -0.25
CPSF4-201ENST00000292476 CACNG8Q8WXS5 425 aa13.47□□□□□ -0.25
CPSF4-201ENST00000292476 PACRGQ96M98 296 aaPredicted RBP13.47□□□□□ -0.25
CPSF4-201ENST00000292476 TBL2Q9Y4P3 447 aaKnown RBP13.47□□□□□ -0.25
CPSF4-201ENST00000292476 ITPR3Q14573 2671 aa13.47□□□□□ -0.25
CPSF4-201ENST00000292476 TEX50A0A1B0GTY4 177 aa13.47□□□□□ -0.25
CPSF4-201ENST00000292476 FABP4P15090 132 aa13.47□□□□□ -0.25
CPSF4-201ENST00000292476 UBE2E1P51965 193 aa13.47□□□□□ -0.25
CPSF4-201ENST00000292476 DIAPH2-AS1Q14236 149 aa13.47□□□□□ -0.25
CPSF4-201ENST00000292476 LURAP1LQ8IV03 231 aa13.47□□□□□ -0.25
CPSF4-201ENST00000292476 FUT9Q9Y231 359 aa13.47□□□□□ -0.25
CPSF4-201ENST00000292476 YTHDF2Q9Y5A9 579 aaKnown RBP13.47□□□□□ -0.25
CPSF4-201ENST00000292476 IGHV4-30-2A0A087WSY4 118 aa13.46□□□□□ -0.26
CPSF4-201ENST00000292476 IGHV4-61A0A0C4DH41 118 aa13.46□□□□□ -0.26
CPSF4-201ENST00000292476 SCO2A0A1W2PP80 73 aa13.46□□□□□ -0.26
CPSF4-201ENST00000292476 SAA1P0DJI8 122 aaPredicted RBP13.46□□□□□ -0.26
CPSF4-201ENST00000292476 GPX4P36969 197 aaPredicted RBP13.46□□□□□ -0.26
CPSF4-201ENST00000292476 PQLC2Q6ZP29 291 aa13.46□□□□□ -0.26
CPSF4-201ENST00000292476 RNF2Q99496 336 aa13.46□□□□□ -0.26
CPSF4-201ENST00000292476 F8P00451 2351 aa13.46□□□□□ -0.26
CPSF4-201ENST00000292476 A0A1W2PN81 502 aa13.45□□□□□ -0.26
CPSF4-201ENST00000292476 SRRM4A7MD48 611 aaKnown RBP13.45□□□□□ -0.26
CPSF4-201ENST00000292476 OR5G3P0C626 314 aa13.45□□□□□ -0.26
CPSF4-201ENST00000292476 RNASE2P10153 161 aaKnown RBP13.45□□□□□ -0.26
CPSF4-201ENST00000292476 HOXB4P17483 251 aaPredicted RBP13.45□□□□□ -0.26
CPSF4-201ENST00000292476 CHRNA7P36544 502 aa13.45□□□□□ -0.26
CPSF4-201ENST00000292476 TAS2R45P59539 299 aa13.45□□□□□ -0.26
CPSF4-201ENST00000292476 HCP5Q6MZN7 132 aa13.45□□□□□ -0.26
CPSF4-201ENST00000292476 TMEM167AQ8TBQ9 72 aa13.45□□□□□ -0.26
CPSF4-201ENST00000292476 DERL1Q9BUN8 251 aa13.45□□□□□ -0.26
CPSF4-201ENST00000292476 HINT2Q9BX68 163 aa13.45□□□□□ -0.26
CPSF4-201ENST00000292476 SEPSECSQ9HD40 501 aaKnown RBP13.45□□□□□ -0.26
CPSF4-201ENST00000292476 NDUFA4L2Q9NRX3 87 aa13.45□□□□□ -0.26
CPSF4-201ENST00000292476 TECRQ9NZ01 308 aaKnown RBP13.45□□□□□ -0.26
CPSF4-201ENST00000292476 TRBV20OR9-2A0A075B6H5 130 aa13.44□□□□□ -0.26
CPSF4-201ENST00000292476 XKRY2A2RUG3 117 aa13.44□□□□□ -0.26
CPSF4-201ENST00000292476 RPL15P61313 204 aaKnown RBP13.44□□□□□ -0.26
CPSF4-201ENST00000292476 CD69Q07108 199 aa13.44□□□□□ -0.26
CPSF4-201ENST00000292476 FAM78BQ5VT40 261 aa13.44□□□□□ -0.26
CPSF4-201ENST00000292476 TEX45Q8NA69 505 aa13.44□□□□□ -0.26
CPSF4-201ENST00000292476 MRPL32Q9BYC8 188 aaKnown RBP13.44□□□□□ -0.26
CPSF4-201ENST00000292476 ZNF469Q96JG9 3925 aaPredicted RBP13.44□□□□□ -0.26
CPSF4-201ENST00000292476 HIVEP1P15822 2718 aa13.44□□□□□ -0.26
CPSF4-201ENST00000292476 B4DSR2 109 aa13.44□□□□□ -0.26
CPSF4-201ENST00000292476 GATA3P23771 443 aa13.44□□□□□ -0.26
CPSF4-201ENST00000292476 DLX1P56177 255 aa13.44□□□□□ -0.26
CPSF4-201ENST00000292476 RPL8P62917 257 aaKnown RBP13.44□□□□□ -0.26
CPSF4-201ENST00000292476 ERHP84090 104 aaKnown RBP13.44□□□□□ -0.26
CPSF4-201ENST00000292476 PAX8Q06710 450 aa13.44□□□□□ -0.26
CPSF4-201ENST00000292476 PDZD11Q5EBL8 140 aa13.44□□□□□ -0.26
CPSF4-201ENST00000292476 TEX38Q6PEX7 206 aa13.44□□□□□ -0.26
CPSF4-201ENST00000292476 MRPL41Q8IXM3 137 aaKnown RBP13.44□□□□□ -0.26
CPSF4-201ENST00000292476 OR10G8Q8NGN5 311 aa13.44□□□□□ -0.26
CPSF4-201ENST00000292476 COMMD5Q9GZQ3 224 aa13.44□□□□□ -0.26
CPSF4-201ENST00000292476 MED13LQ71F56 2210 aa13.43□□□□□ -0.26
CPSF4-201ENST00000292476 A0A1W2PPI3 338 aa13.43□□□□□ -0.26
CPSF4-201ENST00000292476 AMBPP02760 352 aa13.43□□□□□ -0.26
CPSF4-201ENST00000292476 JOSD1Q15040 202 aaPredicted RBP13.43□□□□□ -0.26
CPSF4-201ENST00000292476 SPATA31B1PQ5VZV4 182 aa13.43□□□□□ -0.26
CPSF4-201ENST00000292476 ZNF114Q8NC26 417 aa13.43□□□□□ -0.26
CPSF4-201ENST00000292476 Q96MF0 132 aa13.43□□□□□ -0.26
CPSF4-201ENST00000292476 PRDM13Q9H4Q3 707 aa13.43□□□□□ -0.26
CPSF4-201ENST00000292476 GATCO43716 136 aaKnown RBP13.42□□□□□ -0.26
CPSF4-201ENST00000292476 MSMBP08118 114 aa13.42□□□□□ -0.26
CPSF4-201ENST00000292476 MYOD1P15172 320 aa13.42□□□□□ -0.26
CPSF4-201ENST00000292476 KLRD1Q13241 179 aa13.42□□□□□ -0.26
CPSF4-201ENST00000292476 GAMTQ14353 236 aa13.42□□□□□ -0.26
CPSF4-201ENST00000292476 OR5T1Q8NG75 326 aa13.42□□□□□ -0.26
CPSF4-201ENST00000292476 TBX15Q96SF7 602 aa13.42□□□□□ -0.26
CPSF4-201ENST00000292476 IGLV2-23P01705 113 aa13.41□□□□□ -0.26
CPSF4-201ENST00000292476 CNN1P51911 297 aaKnown RBP13.41□□□□□ -0.26
CPSF4-201ENST00000292476 YPEL3P61236 119 aaPredicted RBP13.41□□□□□ -0.26
CPSF4-201ENST00000292476 PRB3Q04118 309 aaPredicted RBP13.41□□□□□ -0.26
CPSF4-201ENST00000292476 MIR17HGQ75NE6 70 aa13.41□□□□□ -0.26
CPSF4-201ENST00000292476 MMD2Q8IY49 270 aa13.41□□□□□ -0.26
CPSF4-201ENST00000292476 SGMS2Q8NHU3 365 aa13.41□□□□□ -0.26
CPSF4-201ENST00000292476 OCC1Q8TAD7 63 aa13.41□□□□□ -0.26
CPSF4-201ENST00000292476 IL36BQ9NZH7 164 aa13.41□□□□□ -0.26
CPSF4-201ENST00000292476 TRAV20A0A0B4J274 112 aa13.4□□□□□ -0.26
CPSF4-201ENST00000292476 A0A0U1RQK1 487 aa13.4□□□□□ -0.26
CPSF4-201ENST00000292476 A0A1W2PRE2 83 aa13.4□□□□□ -0.26
CPSF4-201ENST00000292476 ZNF320A2RRD8 509 aa13.4□□□□□ -0.26
CPSF4-201ENST00000292476 TIMM23O14925 209 aa13.4□□□□□ -0.26
CPSF4-201ENST00000292476 GCGP01275 180 aa13.4□□□□□ -0.26
CPSF4-201ENST00000292476 OR10J4P0C629 311 aa13.4□□□□□ -0.26
CPSF4-201ENST00000292476 OR10J1P30954 320 aa13.4□□□□□ -0.26
CPSF4-201ENST00000292476 SUB1P53999 127 aaKnown RBP eCLIP13.4□□□□□ -0.265e-6■■■■■ 28.3
CPSF4-201ENST00000292476 PRSS57Q6UWY2 283 aa13.4□□□□□ -0.26
CPSF4-201ENST00000292476 TMEM18Q96B42 140 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms