RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 BTF3L4Q96K17 158 aa14.7□□□□□ -0.06
SHKBP1-201ENST00000291842 FBXL15Q9H469 300 aa14.7□□□□□ -0.06
SHKBP1-201ENST00000291842 CHODLQ9H9P2 273 aa14.7□□□□□ -0.06
SHKBP1-201ENST00000291842 TNFRSF19Q9NS68 423 aa14.7□□□□□ -0.06
SHKBP1-201ENST00000291842 SPTBN4Q9H254 2564 aa14.7□□□□□ -0.06
SHKBP1-201ENST00000291842 TCL1AP56279 114 aa14.7□□□□□ -0.06
SHKBP1-201ENST00000291842 OR1L6Q8NGR2 347 aa14.7□□□□□ -0.06
SHKBP1-201ENST00000291842 OR1B1Q8NGR6 318 aa14.7□□□□□ -0.06
SHKBP1-201ENST00000291842 RPEQ96AT9 228 aa14.7□□□□□ -0.06
SHKBP1-201ENST00000291842 IGLV2-8P01709 118 aa14.69□□□□□ -0.06
SHKBP1-201ENST00000291842 JOSD1Q15040 202 aaPredicted RBP14.69□□□□□ -0.06
SHKBP1-201ENST00000291842 THAP8Q8NA92 274 aa14.69□□□□□ -0.06
SHKBP1-201ENST00000291842 OR1L4Q8NGR5 311 aa14.69□□□□□ -0.06
SHKBP1-201ENST00000291842 TRAV34A0A0B4J273 112 aa14.69□□□□□ -0.06
SHKBP1-201ENST00000291842 FCN1O00602 326 aa14.69□□□□□ -0.06
SHKBP1-201ENST00000291842 CRYGBP07316 175 aa14.69□□□□□ -0.06
SHKBP1-201ENST00000291842 BPIFB3P59826 476 aa14.69□□□□□ -0.06
SHKBP1-201ENST00000291842 YPEL3P61236 119 aaPredicted RBP14.69□□□□□ -0.06
SHKBP1-201ENST00000291842 ADORA2A-AS1P86434 159 aa14.69□□□□□ -0.06
SHKBP1-201ENST00000291842 TNFRSF14Q92956 283 aa14.69□□□□□ -0.06
SHKBP1-201ENST00000291842 RNF2Q99496 336 aa14.69□□□□□ -0.06
SHKBP1-201ENST00000291842 ZNF705GA8MUZ8 300 aaPredicted RBP14.68□□□□□ -0.06
SHKBP1-201ENST00000291842 FSTL3O95633 263 aa14.68□□□□□ -0.06
SHKBP1-201ENST00000291842 COMPP49747 757 aaPredicted RBP14.68□□□□□ -0.06
SHKBP1-201ENST00000291842 LDLRAD2Q5SZI1 272 aa14.68□□□□□ -0.06
SHKBP1-201ENST00000291842 PPP1R27Q86WC6 154 aa14.68□□□□□ -0.06
SHKBP1-201ENST00000291842 MRPL41Q8IXM3 137 aaKnown RBP14.68□□□□□ -0.06
SHKBP1-201ENST00000291842 GBGT1Q8N5D6 347 aa14.68□□□□□ -0.06
SHKBP1-201ENST00000291842 BLNKQ8WV28 456 aa14.68□□□□□ -0.06
SHKBP1-201ENST00000291842 IGF2BP2-AS1Q96M15 143 aa14.68□□□□□ -0.06
SHKBP1-201ENST00000291842 MRPL18Q9H0U6 180 aaKnown RBP14.68□□□□□ -0.06
SHKBP1-201ENST00000291842 SERTAD4Q9NUC0 356 aa14.68□□□□□ -0.06
SHKBP1-201ENST00000291842 ASH1LQ9NR48 2969 aaKnown RBP14.68□□□□□ -0.06
SHKBP1-201ENST00000291842 TMEM18Q96B42 140 aa14.68□□□□□ -0.06
SHKBP1-201ENST00000291842 ZMAT5Q9UDW3 170 aaKnown RBP14.68□□□□□ -0.06
SHKBP1-201ENST00000291842 AMMECR1Q9Y4X0 333 aaPredicted RBP14.68□□□□□ -0.06
SHKBP1-201ENST00000291842 CA1P00915 261 aaPredicted RBP14.67□□□□□ -0.06
SHKBP1-201ENST00000291842 RANP62826 216 aaKnown RBP14.67□□□□□ -0.06
SHKBP1-201ENST00000291842 FBXL19-AS1Q494R0 122 aa14.67□□□□□ -0.06
SHKBP1-201ENST00000291842 OR8B3Q8NGG8 313 aa14.67□□□□□ -0.06
SHKBP1-201ENST00000291842 FXYD5Q96DB9 178 aa14.67□□□□□ -0.06
SHKBP1-201ENST00000291842 OR8B2Q96RD0 313 aa14.67□□□□□ -0.06
SHKBP1-201ENST00000291842 GCGP01275 180 aa14.67□□□□□ -0.06
SHKBP1-201ENST00000291842 ARF6P62330 175 aa14.67□□□□□ -0.06
SHKBP1-201ENST00000291842 SELENOTP62341 195 aa14.67□□□□□ -0.06
SHKBP1-201ENST00000291842 GNG5P63218 68 aa14.67□□□□□ -0.06
SHKBP1-201ENST00000291842 PLGLAQ15195 96 aa14.67□□□□□ -0.06
SHKBP1-201ENST00000291842 LEMD1Q68G75 181 aa14.67□□□□□ -0.06
SHKBP1-201ENST00000291842 ZNF329Q86UD4 541 aa14.67□□□□□ -0.06
SHKBP1-201ENST00000291842 ST6GALNAC3Q8NDV1 305 aa14.67□□□□□ -0.06
SHKBP1-201ENST00000291842 SGK494Q96LW2 274 aa14.67□□□□□ -0.06
SHKBP1-201ENST00000291842 SVEP1Q4LDE5 3571 aa14.67□□□□□ -0.06
SHKBP1-201ENST00000291842 SNURFLB1AK76 121 aa14.66□□□□□ -0.06
SHKBP1-201ENST00000291842 CRYGCP07315 174 aa14.66□□□□□ -0.06
SHKBP1-201ENST00000291842 CD24P25063 80 aa14.66□□□□□ -0.06
SHKBP1-201ENST00000291842 IBA57Q5T440 356 aaKnown RBP14.66□□□□□ -0.06
SHKBP1-201ENST00000291842 BEND2Q8NDZ0 799 aa14.66□□□□□ -0.06
SHKBP1-201ENST00000291842 OR5R1Q8NH85 324 aa14.66□□□□□ -0.06
SHKBP1-201ENST00000291842 A0A1W2PRD5 423 aa14.66□□□□□ -0.06
SHKBP1-201ENST00000291842 A0A1W2PRF3 423 aa14.66□□□□□ -0.06
SHKBP1-201ENST00000291842 A0A1W2PRM7 423 aa14.66□□□□□ -0.06
SHKBP1-201ENST00000291842 TEX22C9J3V5 150 aa14.66□□□□□ -0.06
SHKBP1-201ENST00000291842 H3BTX0 84 aa14.66□□□□□ -0.06
SHKBP1-201ENST00000291842 KLRB1Q12918 225 aa14.66□□□□□ -0.06
SHKBP1-201ENST00000291842 ETFRF1Q6IPR1 90 aa14.66□□□□□ -0.06
SHKBP1-201ENST00000291842 UNQ6494/PRO21346Q6UXR6 183 aa14.66□□□□□ -0.06
SHKBP1-201ENST00000291842 HILPDAQ9Y5L2 63 aa14.66□□□□□ -0.06
SHKBP1-201ENST00000291842 SSBP3Q9BWW4 388 aaPredicted RBP14.65□□□□□ -0.06
SHKBP1-201ENST00000291842 FAM168AQ92567 244 aa14.65□□□□□ -0.07
SHKBP1-201ENST00000291842 OSTCQ9NRP0 149 aa14.65□□□□□ -0.07
SHKBP1-201ENST00000291842 TP53TG3Q9ULZ0 132 aa14.65□□□□□ -0.07
SHKBP1-201ENST00000291842 RPH3ALQ9UNE2 315 aa14.65□□□□□ -0.07
SHKBP1-201ENST00000291842 ISLRO14498 428 aa14.64□□□□□ -0.07
SHKBP1-201ENST00000291842 TIMM23O14925 209 aa14.64□□□□□ -0.07
SHKBP1-201ENST00000291842 KLRD1Q13241 179 aa14.64□□□□□ -0.07
SHKBP1-201ENST00000291842 SRSF12Q8WXF0 261 aaKnown RBP14.64□□□□□ -0.07
SHKBP1-201ENST00000291842 SPTBN1Q01082 2364 aaKnown RBP14.63□□□□□ -0.07
SHKBP1-201ENST00000291842 TRAV9-1A0A075B6T8 112 aa14.63□□□□□ -0.07
SHKBP1-201ENST00000291842 F2Z2F3 143 aa14.63□□□□□ -0.07
SHKBP1-201ENST00000291842 PEX7O00628 323 aa14.63□□□□□ -0.07
SHKBP1-201ENST00000291842 LIPFP07098 398 aa14.63□□□□□ -0.07
SHKBP1-201ENST00000291842 TMEM116Q8NCL8 245 aa14.63□□□□□ -0.07
SHKBP1-201ENST00000291842 C22orf15Q8WYQ4 148 aa14.63□□□□□ -0.07
SHKBP1-201ENST00000291842 CDC42EP3Q9UKI2 254 aa14.63□□□□□ -0.07
SHKBP1-201ENST00000291842 F11RQ9Y624 299 aaKnown RBP14.63□□□□□ -0.07
SHKBP1-201ENST00000291842 LY6LH3BQJ8 138 aa14.63□□□□□ -0.07
SHKBP1-201ENST00000291842 CRISP2P16562 243 aa14.63□□□□□ -0.07
SHKBP1-201ENST00000291842 PKIAP61925 76 aa14.63□□□□□ -0.07
SHKBP1-201ENST00000291842 DEFA6Q01524 100 aa14.63□□□□□ -0.07
SHKBP1-201ENST00000291842 KIAA1644Q3SXP7 199 aa14.63□□□□□ -0.07
SHKBP1-201ENST00000291842 DNLZQ5SXM8 178 aa14.63□□□□□ -0.07
SHKBP1-201ENST00000291842 PRR27Q6MZM9 219 aa14.63□□□□□ -0.07
SHKBP1-201ENST00000291842 MRPL54Q6P161 138 aaKnown RBP14.63□□□□□ -0.07
SHKBP1-201ENST00000291842 PERPQ96FX8 193 aa14.63□□□□□ -0.07
SHKBP1-201ENST00000291842 TRGV9Q99603 122 aa14.63□□□□□ -0.07
SHKBP1-201ENST00000291842 RAB1BQ9H0U4 201 aa14.63□□□□□ -0.07
SHKBP1-201ENST00000291842 CHD8Q9HCK8 2581 aa14.63□□□□□ -0.07
SHKBP1-201ENST00000291842 CD33P20138 364 aa14.62□□□□□ -0.07
SHKBP1-201ENST00000291842 RAB4BP61018 213 aa14.62□□□□□ -0.07
SHKBP1-201ENST00000291842 MMDQ15546 238 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms