RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 TRAV8-1A0A0A6YYK1 113 aa11.7□□□□□ -0.54
SDC1-201ENST00000254351 SLC25A5P05141 298 aaKnown RBP11.7□□□□□ -0.54
SDC1-201ENST00000254351 TAS2R45P59539 299 aa11.7□□□□□ -0.54
SDC1-201ENST00000254351 DEFB125Q8N687 156 aa11.7□□□□□ -0.54
SDC1-201ENST00000254351 IFI27L2Q9H2X8 130 aa11.7□□□□□ -0.54
SDC1-201ENST00000254351 CHODLQ9H9P2 273 aa11.7□□□□□ -0.54
SDC1-201ENST00000254351 COX7A2P2O60397 106 aa11.69□□□□□ -0.54
SDC1-201ENST00000254351 C10orf55Q5SWW7 151 aa11.69□□□□□ -0.54
SDC1-201ENST00000254351 PRSS57Q6UWY2 283 aa11.69□□□□□ -0.54
SDC1-201ENST00000254351 OR2V2Q96R30 315 aa11.69□□□□□ -0.54
SDC1-201ENST00000254351 IDI2-AS1Q9NZ38 188 aa11.69□□□□□ -0.54
SDC1-201ENST00000254351 LOC389332A0A1B0GUA5 103 aa11.69□□□□□ -0.54
SDC1-201ENST00000254351 SRRM4A7MD48 611 aaKnown RBP11.69□□□□□ -0.54
SDC1-201ENST00000254351 ARF6P62330 175 aa11.69□□□□□ -0.54
SDC1-201ENST00000254351 SMIM21Q3B7S5 101 aa11.69□□□□□ -0.54
SDC1-201ENST00000254351 Q5PR19 223 aa11.69□□□□□ -0.54
SDC1-201ENST00000254351 WFDC3Q8IUB2 231 aa11.69□□□□□ -0.54
SDC1-201ENST00000254351 OR4S2Q8NH73 311 aa11.69□□□□□ -0.54
SDC1-201ENST00000254351 FLYWCH2Q96CP2 140 aaKnown RBP11.69□□□□□ -0.54
SDC1-201ENST00000254351 FAM173AQ9BQD7 235 aa11.69□□□□□ -0.54
SDC1-201ENST00000254351 A0A1W2PRD5 423 aa11.69□□□□□ -0.54
SDC1-201ENST00000254351 A0A1W2PRF3 423 aa11.69□□□□□ -0.54
SDC1-201ENST00000254351 A0A1W2PRM7 423 aa11.69□□□□□ -0.54
SDC1-201ENST00000254351 WISP2O76076 250 aa11.69□□□□□ -0.54
SDC1-201ENST00000254351 TMPRSS3P57727 454 aa11.69□□□□□ -0.54
SDC1-201ENST00000254351 OR8A1Q8NGG7 326 aa11.69□□□□□ -0.54
SDC1-201ENST00000254351 PAXXQ9BUH6 204 aa11.69□□□□□ -0.54
SDC1-201ENST00000254351 SLC25A2Q9BXI2 301 aa11.69□□□□□ -0.54
SDC1-201ENST00000254351 C21orf140B9A014 251 aa11.68□□□□□ -0.54
SDC1-201ENST00000254351 PEX7O00628 323 aa11.68□□□□□ -0.54
SDC1-201ENST00000254351 CHEK1O14757 476 aa11.68□□□□□ -0.54
SDC1-201ENST00000254351 MOSP00540 346 aa11.68□□□□□ -0.54
SDC1-201ENST00000254351 CT45A1Q5HYN5 189 aa11.68□□□□□ -0.54
SDC1-201ENST00000254351 FAM120AOSQ5T036 256 aa11.68□□□□□ -0.54
SDC1-201ENST00000254351 C1orf185Q5T7R7 199 aa11.68□□□□□ -0.54
SDC1-201ENST00000254351 CT45A3Q8NHU0 189 aa11.68□□□□□ -0.54
SDC1-201ENST00000254351 CORO2AQ92828 525 aa11.68□□□□□ -0.54
SDC1-201ENST00000254351 MBD6Q96DN6 1003 aa11.68□□□□□ -0.54
SDC1-201ENST00000254351 SPOCK3Q9BQ16 436 aa11.68□□□□□ -0.54
SDC1-201ENST00000254351 TMUB1Q9BVT8 246 aa11.68□□□□□ -0.54
SDC1-201ENST00000254351 TMEM191AQ9H0A3 160 aa11.68□□□□□ -0.54
SDC1-201ENST00000254351 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.68□□□□□ -0.54
SDC1-201ENST00000254351 PGPA6NDG6 321 aa11.68□□□□□ -0.54
SDC1-201ENST00000254351 GPR183P32249 361 aa11.68□□□□□ -0.54
SDC1-201ENST00000254351 RHOGP84095 191 aa11.68□□□□□ -0.54
SDC1-201ENST00000254351 TMEM177Q53S58 311 aa11.68□□□□□ -0.54
SDC1-201ENST00000254351 C12orf54Q6X4T0 127 aa11.68□□□□□ -0.54
SDC1-201ENST00000254351 OR1B1Q8NGR6 318 aa11.68□□□□□ -0.54
SDC1-201ENST00000254351 GNG7O60262 68 aa11.67□□□□□ -0.54
SDC1-201ENST00000254351 NCR2O95944 276 aa11.67□□□□□ -0.54
SDC1-201ENST00000254351 ADH4P08319 380 aa11.67□□□□□ -0.54
SDC1-201ENST00000254351 HTR1DP28221 377 aa11.67□□□□□ -0.54
SDC1-201ENST00000254351 NPIPB3Q92617 1050 aa11.67□□□□□ -0.54
SDC1-201ENST00000254351 GRAMD2BQ96HH9 432 aa11.67□□□□□ -0.54
SDC1-201ENST00000254351 MAP1LC3CQ9BXW4 147 aa11.67□□□□□ -0.54
SDC1-201ENST00000254351 ZNF835Q9Y2P0 537 aa11.67□□□□□ -0.54
SDC1-201ENST00000254351 F11RQ9Y624 299 aaKnown RBP11.67□□□□□ -0.54
SDC1-201ENST00000254351 IGKV1D-17A0A075B6S4 117 aa11.67□□□□□ -0.54
SDC1-201ENST00000254351 K7EMI3 77 aa11.67□□□□□ -0.54
SDC1-201ENST00000254351 IGHV1-2P23083 117 aa11.67□□□□□ -0.54
SDC1-201ENST00000254351 COX19Q49B96 90 aa11.67□□□□□ -0.54
SDC1-201ENST00000254351 SVEP1Q4LDE5 3571 aa11.67□□□□□ -0.54
SDC1-201ENST00000254351 E7EUB6 86 aa11.66□□□□□ -0.54
SDC1-201ENST00000254351 ATP1A1-AS1Q5TC04 95 aa11.66□□□□□ -0.54
SDC1-201ENST00000254351 GTSF1Q8WW33 167 aa11.66□□□□□ -0.54
SDC1-201ENST00000254351 ZNF430Q9H8G1 570 aaPredicted RBP11.66□□□□□ -0.54
SDC1-201ENST00000254351 ST20Q9HBF5 79 aa11.66□□□□□ -0.54
SDC1-201ENST00000254351 HBBP68871 147 aa11.66□□□□□ -0.54
SDC1-201ENST00000254351 RPL24P83731 157 aaKnown RBP11.66□□□□□ -0.54
SDC1-201ENST00000254351 OR1N2Q8NGR9 330 aa11.66□□□□□ -0.54
SDC1-201ENST00000254351 MEOX1P50221 254 aa11.66□□□□□ -0.54
SDC1-201ENST00000254351 BPIFA4PQ86YQ2 179 aa11.66□□□□□ -0.54
SDC1-201ENST00000254351 RBMXL3Q8N7X1 1067 aaKnown RBP11.66□□□□□ -0.54
SDC1-201ENST00000254351 WDR31Q8NA23 367 aa11.66□□□□□ -0.54
SDC1-201ENST00000254351 COMMD5Q9GZQ3 224 aa11.66□□□□□ -0.54
SDC1-201ENST00000254351 SPRY3O43610 288 aa11.65□□□□□ -0.54
SDC1-201ENST00000254351 FAM106CPP0CH98 169 aa11.65□□□□□ -0.54
SDC1-201ENST00000254351 HIST1H1EP10412 219 aaKnown RBP11.65□□□□□ -0.54
SDC1-201ENST00000254351 LOXL3P58215 753 aa11.65□□□□□ -0.54
SDC1-201ENST00000254351 FAM106AQ4KMX7 169 aa11.65□□□□□ -0.54
SDC1-201ENST00000254351 ZNF329Q86UD4 541 aa11.65□□□□□ -0.54
SDC1-201ENST00000254351 CXXC4Q9H2H0 198 aa11.65□□□□□ -0.54
SDC1-201ENST00000254351 CALYQ9NYX4 217 aa11.65□□□□□ -0.54
SDC1-201ENST00000254351 SLC25A10Q9UBX3 287 aaPredicted RBP11.65□□□□□ -0.54
SDC1-201ENST00000254351 C10orf113Q5VZT2 155 aa11.65□□□□□ -0.54
SDC1-201ENST00000254351 MOGAT3Q86VF5 341 aa11.65□□□□□ -0.54
SDC1-201ENST00000254351 FER1L6-AS1Q8NA97 138 aa11.65□□□□□ -0.54
SDC1-201ENST00000254351 DAZAP1Q96EP5 407 aaKnown RBP11.65□□□□□ -0.54
SDC1-201ENST00000254351 FAM167A-AS1Q96KT0 104 aa11.65□□□□□ -0.54
SDC1-201ENST00000254351 JMJD8Q96S16 334 aa11.65□□□□□ -0.54
SDC1-201ENST00000254351 TMEM14BQ9NUH8 114 aa11.65□□□□□ -0.54
SDC1-201ENST00000254351 IQCF6A8MYZ5 107 aa11.64□□□□□ -0.55
SDC1-201ENST00000254351 P01737 135 aa11.64□□□□□ -0.55
SDC1-201ENST00000254351 PRB3Q04118 309 aaPredicted RBP11.64□□□□□ -0.55
SDC1-201ENST00000254351 LINC00305Q7Z4B0 112 aa11.64□□□□□ -0.55
SDC1-201ENST00000254351 SCRT2Q9NQ03 307 aa11.64□□□□□ -0.55
SDC1-201ENST00000254351 PEF1Q9UBV8 284 aaKnown RBP11.64□□□□□ -0.55
SDC1-201ENST00000254351 MGAQ8IWI9 3026 aa11.64□□□□□ -0.55
SDC1-201ENST00000254351 ACP1P24666 158 aa11.64□□□□□ -0.55
SDC1-201ENST00000254351 HOXC12P31275 282 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms