RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 SAMD12Q8N8I0 201 aa11.86□□□□□ -0.51
CLN3-255ENST00000637100 PINX1Q96BK5 328 aaKnown RBP11.86□□□□□ -0.51
CLN3-255ENST00000637100 FNDC4Q9H6D8 234 aaPredicted RBP11.86□□□□□ -0.51
CLN3-255ENST00000637100 SCPEP1Q9HB40 452 aa11.86□□□□□ -0.51
CLN3-255ENST00000637100 MRPL36Q9P0J6 103 aaKnown RBP11.86□□□□□ -0.51
CLN3-255ENST00000637100 AGRNO00468 2067 aa11.86□□□□□ -0.51
CLN3-255ENST00000637100 IGHV4-4A0A075B6R2 117 aa11.85□□□□□ -0.51
CLN3-255ENST00000637100 CORTO00230 105 aa11.85□□□□□ -0.51
CLN3-255ENST00000637100 CLN5O75503 358 aa11.85□□□□□ -0.51
CLN3-255ENST00000637100 AMBPP02760 352 aa11.85□□□□□ -0.51
CLN3-255ENST00000637100 TGFBR1P36897 503 aa11.85□□□□□ -0.51
CLN3-255ENST00000637100 KCTD21Q4G0X4 260 aa11.85□□□□□ -0.51
CLN3-255ENST00000637100 AARDQ4LEZ3 155 aa11.85□□□□□ -0.51
CLN3-255ENST00000637100 OR4X1Q8NH49 305 aa11.85□□□□□ -0.51
CLN3-255ENST00000637100 PKD1P98161 4303 aa11.85□□□□□ -0.51
CLN3-255ENST00000637100 IGHV3-66A0A0C4DH42 116 aa11.84□□□□□ -0.51
CLN3-255ENST00000637100 IGKV1-17P01599 117 aa11.84□□□□□ -0.51
CLN3-255ENST00000637100 SNCAP37840 140 aa11.84□□□□□ -0.51
CLN3-255ENST00000637100 IZUMO4Q1ZYL8 232 aa11.84□□□□□ -0.51
CLN3-255ENST00000637100 LHFPL1Q86WI0 220 aa11.84□□□□□ -0.51
CLN3-255ENST00000637100 ZNF486Q96H40 463 aaPredicted RBP11.84□□□□□ -0.51
CLN3-255ENST00000637100 Q9H521 79 aa11.84□□□□□ -0.51
CLN3-255ENST00000637100 SEPSECSQ9HD40 501 aaKnown RBP11.84□□□□□ -0.51
CLN3-255ENST00000637100 P2RY1P47900 373 aa11.83□□□□□ -0.52
CLN3-255ENST00000637100 TSPAN5P62079 268 aa11.83□□□□□ -0.52
CLN3-255ENST00000637100 C12orf74Q32Q52 190 aa11.83□□□□□ -0.52
CLN3-255ENST00000637100 RABAC1Q9UI14 185 aa11.83□□□□□ -0.52
CLN3-255ENST00000637100 APOA1P02647 267 aa11.82□□□□□ -0.52
CLN3-255ENST00000637100 MED14OSP0DP75 135 aa11.82□□□□□ -0.52
CLN3-255ENST00000637100 RCVRNP35243 200 aa11.82□□□□□ -0.52
CLN3-255ENST00000637100 SUB1P53999 127 aaKnown RBP eCLIP11.82□□□□□ -0.52
CLN3-255ENST00000637100 RPL11P62913 178 aaKnown RBP11.82□□□□□ -0.52
CLN3-255ENST00000637100 NEDD8Q15843 81 aa11.82□□□□□ -0.52
CLN3-255ENST00000637100 MLANAQ16655 118 aa11.82□□□□□ -0.52
CLN3-255ENST00000637100 POM121L12Q8N7R1 296 aa11.82□□□□□ -0.52
CLN3-255ENST00000637100 YIPF6Q96EC8 236 aa11.82□□□□□ -0.52
CLN3-255ENST00000637100 METTL26Q96S19 204 aa11.82□□□□□ -0.52
CLN3-255ENST00000637100 TBC1D24Q9ULP9 559 aa11.82□□□□□ -0.52
CLN3-255ENST00000637100 KNCNA6PVL3 124 aa11.81□□□□□ -0.52
CLN3-255ENST00000637100 RTL8CO15255 209 aa11.81□□□□□ -0.52
CLN3-255ENST00000637100 ZNF688P0C7X2 276 aa11.81□□□□□ -0.52
CLN3-255ENST00000637100 PPP5CP53041 499 aa11.81□□□□□ -0.52
CLN3-255ENST00000637100 SPINK9Q5DT21 86 aa11.81□□□□□ -0.52
CLN3-255ENST00000637100 STXBP6Q8NFX7 210 aa11.81□□□□□ -0.52
CLN3-255ENST00000637100 GLMPQ8WWB7 406 aa11.81□□□□□ -0.52
CLN3-255ENST00000637100 RAB40CQ96S21 281 aa11.81□□□□□ -0.52
CLN3-255ENST00000637100 TP53RKQ96S44 253 aa11.81□□□□□ -0.52
CLN3-255ENST00000637100 CELA1Q9UNI1 258 aa11.81□□□□□ -0.52
CLN3-255ENST00000637100 TRAV30A0A087WSZ9 112 aa11.8□□□□□ -0.52
CLN3-255ENST00000637100 ATP6V1G2O95670 118 aa11.8□□□□□ -0.52
CLN3-255ENST00000637100 LGALS9BQ3B8N2 356 aa11.8□□□□□ -0.52
CLN3-255ENST00000637100 C16orf54Q6UWD8 224 aa11.8□□□□□ -0.52
CLN3-255ENST00000637100 SLC35G3Q8N808 338 aa11.8□□□□□ -0.52
CLN3-255ENST00000637100 NEU1Q99519 415 aa11.8□□□□□ -0.52
CLN3-255ENST00000637100 ATG12O94817 140 aa11.79□□□□□ -0.52
CLN3-255ENST00000637100 IGLC1P0CG04 106 aa11.79□□□□□ -0.52
CLN3-255ENST00000637100 P0DMU3 169 aa11.79□□□□□ -0.52
CLN3-255ENST00000637100 FAM231AP0DMU4 169 aa11.79□□□□□ -0.52
CLN3-255ENST00000637100 FAM231CP0DMU5 169 aa11.79□□□□□ -0.52
CLN3-255ENST00000637100 UCP1P25874 307 aa11.79□□□□□ -0.52
CLN3-255ENST00000637100 ETV6P41212 452 aa11.79□□□□□ -0.52
CLN3-255ENST00000637100 AP2S1P53680 142 aaPredicted RBP11.79□□□□□ -0.52
CLN3-255ENST00000637100 YPEL3P61236 119 aaPredicted RBP11.79□□□□□ -0.52
CLN3-255ENST00000637100 OR52E5Q8NH55 327 aa11.79□□□□□ -0.52
CLN3-255ENST00000637100 DEFB131BA0A096LNP1 70 aa11.78□□□□□ -0.52
CLN3-255ENST00000637100 A0A0G2JRQ6 117 aa11.78□□□□□ -0.52
CLN3-255ENST00000637100 C3orf85A0A1B0GTC6 90 aa11.78□□□□□ -0.52
CLN3-255ENST00000637100 HELTA6NFD8 242 aa11.78□□□□□ -0.52
CLN3-255ENST00000637100 IFNA17P01571 189 aa11.78□□□□□ -0.52
CLN3-255ENST00000637100 CD74P04233 296 aa11.78□□□□□ -0.52
CLN3-255ENST00000637100 PIGPP57054 158 aa11.78□□□□□ -0.52
CLN3-255ENST00000637100 ACTL10Q5JWF8 245 aa11.78□□□□□ -0.52
CLN3-255ENST00000637100 ZNF705AQ6ZN79 300 aaPredicted RBP11.78□□□□□ -0.52
CLN3-255ENST00000637100 Q6ZRM9 215 aa11.78□□□□□ -0.52
CLN3-255ENST00000637100 ARRDC1Q8N5I2 433 aa11.78□□□□□ -0.52
CLN3-255ENST00000637100 C1QTNF4Q9BXJ3 329 aa11.78□□□□□ -0.52
CLN3-255ENST00000637100 SMIM31A0A1B0GVY4 71 aa11.77□□□□□ -0.53
CLN3-255ENST00000637100 H3BMM0 161 aa11.77□□□□□ -0.53
CLN3-255ENST00000637100 B3GALNT1O75752 331 aa11.77□□□□□ -0.53
CLN3-255ENST00000637100 ELK1P19419 428 aa11.77□□□□□ -0.53
CLN3-255ENST00000637100 OPRK1P41145 380 aa11.77□□□□□ -0.53
CLN3-255ENST00000637100 TIGITQ495A1 244 aa11.77□□□□□ -0.53
CLN3-255ENST00000637100 PRSS54Q6PEW0 395 aa11.77□□□□□ -0.53
CLN3-255ENST00000637100 Q6ZR54 194 aa11.77□□□□□ -0.53
CLN3-255ENST00000637100 TMEM230Q96A57 120 aa11.77□□□□□ -0.53
CLN3-255ENST00000637100 NARS2Q96I59 477 aaKnown RBP11.77□□□□□ -0.53
CLN3-255ENST00000637100 CLEC5AQ9NY25 188 aa11.77□□□□□ -0.53
CLN3-255ENST00000637100 ZNF705FA8MVS1 300 aaPredicted RBP11.76□□□□□ -0.53
CLN3-255ENST00000637100 FAM90A26D6RGX4 464 aa11.76□□□□□ -0.53
CLN3-255ENST00000637100 M0QYG6 137 aa11.76□□□□□ -0.53
CLN3-255ENST00000637100 BUB3O43684 328 aa11.76□□□□□ -0.53
CLN3-255ENST00000637100 SCGB2A1O75556 95 aa11.76□□□□□ -0.53
CLN3-255ENST00000637100 HNRNPCP07910 306 aaKnown RBP eCLIP11.76□□□□□ -0.53
CLN3-255ENST00000637100 ZNF705DP0CH99 300 aaPredicted RBP11.76□□□□□ -0.53
CLN3-255ENST00000637100 ZNF705BP0CI00 300 aaPredicted RBP11.76□□□□□ -0.53
CLN3-255ENST00000637100 SLC25A4P12235 298 aa11.76□□□□□ -0.53
CLN3-255ENST00000637100 PI3P19957 117 aa11.76□□□□□ -0.53
CLN3-255ENST00000637100 TBPP20226 339 aa11.76□□□□□ -0.53
CLN3-255ENST00000637100 HTR2BP41595 481 aa11.76□□□□□ -0.53
CLN3-255ENST00000637100 EIF2B2P49770 351 aaKnown RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms