RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 SYNGR2O43760 224 aa13.85□□□□□ -0.19
CLN3-243ENST00000635973 SAP30O75446 220 aa13.85□□□□□ -0.19
CLN3-243ENST00000635973 OR2C1O95371 312 aa13.85□□□□□ -0.19
CLN3-243ENST00000635973 PTTG1O95997 202 aa13.85□□□□□ -0.19
CLN3-243ENST00000635973 MFAP4P55083 255 aa13.85□□□□□ -0.19
CLN3-243ENST00000635973 KLF5Q13887 457 aaPredicted RBP13.85□□□□□ -0.19
CLN3-243ENST00000635973 BSXQ3C1V8 233 aa13.85□□□□□ -0.19
CLN3-243ENST00000635973 ACSM6Q6P461 480 aa13.85□□□□□ -0.19
CLN3-243ENST00000635973 BSCL2Q96G97 398 aaPredicted RBP13.85□□□□□ -0.19
CLN3-243ENST00000635973 CIB3Q96Q77 187 aaPredicted RBP13.85□□□□□ -0.19
CLN3-243ENST00000635973 MARVELD1Q9BSK0 173 aa13.85□□□□□ -0.19
CLN3-243ENST00000635973 PAIP2BQ9ULR5 123 aaKnown RBP13.85□□□□□ -0.19
CLN3-243ENST00000635973 RPS10-NUDT3A0A1W2PQS6 291 aa13.84□□□□□ -0.19
CLN3-243ENST00000635973 SPNP16150 400 aa13.84□□□□□ -0.19
CLN3-243ENST00000635973 RPP30P78346 268 aaKnown RBP13.84□□□□□ -0.19
CLN3-243ENST00000635973 SPSB3Q6PJ21 355 aa13.84□□□□□ -0.19
CLN3-243ENST00000635973 ZBTB8BQ8NAP8 495 aaPredicted RBP13.84□□□□□ -0.19
CLN3-243ENST00000635973 OR9G4Q8NGQ1 327 aa13.84□□□□□ -0.19
CLN3-243ENST00000635973 OR10C1Q96KK4 312 aa13.84□□□□□ -0.19
CLN3-243ENST00000635973 OR4C12Q96R67 309 aa13.84□□□□□ -0.19
CLN3-243ENST00000635973 ATP6V0BQ99437 205 aa13.84□□□□□ -0.19
CLN3-243ENST00000635973 LSM4Q9Y4Z0 139 aaKnown RBP13.84□□□□□ -0.19
CLN3-243ENST00000635973 RYR3Q15413 4870 aa13.83□□□□□ -0.2
CLN3-243ENST00000635973 SNRPGP15A8MWD9 76 aa13.83□□□□□ -0.2
CLN3-243ENST00000635973 SSSCA1O60232 199 aa13.83□□□□□ -0.2
CLN3-243ENST00000635973 GNG7O60262 68 aa13.83□□□□□ -0.2
CLN3-243ENST00000635973 IFNA4P05014 189 aa13.83□□□□□ -0.2
CLN3-243ENST00000635973 NPBWR1P48145 328 aa13.83□□□□□ -0.2
CLN3-243ENST00000635973 FAM106AQ4KMX7 169 aa13.83□□□□□ -0.2
CLN3-243ENST00000635973 PVRIGQ6DKI7 326 aa13.83□□□□□ -0.2
CLN3-243ENST00000635973 GSG1LQ6UXU4 331 aa13.83□□□□□ -0.2
CLN3-243ENST00000635973 OR4D5Q8NGN0 318 aa13.83□□□□□ -0.2
CLN3-243ENST00000635973 RNASEH2CQ8TDP1 164 aaKnown RBP13.83□□□□□ -0.2
CLN3-243ENST00000635973 PEMTQ9UBM1 199 aa13.83□□□□□ -0.2
CLN3-243ENST00000635973 IGHV3-35A0A0C4DH35 117 aa13.82□□□□□ -0.2
CLN3-243ENST00000635973 ZNF320A2RRD8 509 aa13.82□□□□□ -0.2
CLN3-243ENST00000635973 NUPL2O15504 423 aaKnown RBP13.82□□□□□ -0.2
CLN3-243ENST00000635973 SCGB2A1O75556 95 aa13.82□□□□□ -0.2
CLN3-243ENST00000635973 ATP5IP56385 69 aaPredicted RBP13.82□□□□□ -0.2
CLN3-243ENST00000635973 POLR2GP62487 172 aaKnown RBP eCLIP13.82□□□□□ -0.2
CLN3-243ENST00000635973 RAB11AP62491 216 aa13.82□□□□□ -0.2
CLN3-243ENST00000635973 TXN2Q99757 166 aa13.82□□□□□ -0.2
CLN3-243ENST00000635973 U3KQK5 164 aa13.82□□□□□ -0.2
CLN3-243ENST00000635973 DNAH9Q9NYC9 4486 aa13.81□□□□□ -0.2
CLN3-243ENST00000635973 F8W735 103 aaPredicted RBP13.81□□□□□ -0.2
CLN3-243ENST00000635973 ID3Q02535 119 aa13.81□□□□□ -0.2
CLN3-243ENST00000635973 ETFRF1Q6IPR1 90 aa13.81□□□□□ -0.2
CLN3-243ENST00000635973 GPHB5Q86YW7 130 aa13.81□□□□□ -0.2
CLN3-243ENST00000635973 FNDC4Q9H6D8 234 aaPredicted RBP13.81□□□□□ -0.2
CLN3-243ENST00000635973 SMAD5-AS1Q9Y6J3 95 aa13.81□□□□□ -0.2
CLN3-243ENST00000635973 H3BP45 60 aa13.8□□□□□ -0.2
CLN3-243ENST00000635973 GOSR2O14653 212 aa13.8□□□□□ -0.2
CLN3-243ENST00000635973 SSNA1O43805 119 aa13.8□□□□□ -0.2
CLN3-243ENST00000635973 FCGR2BP31994 310 aaPredicted RBP13.8□□□□□ -0.2
CLN3-243ENST00000635973 RELQ04864 619 aaPredicted RBP13.8□□□□□ -0.2
CLN3-243ENST00000635973 RGS21Q2M5E4 152 aa13.8□□□□□ -0.2
CLN3-243ENST00000635973 SPANXN5Q5MJ07 72 aa13.8□□□□□ -0.2
CLN3-243ENST00000635973 TMEM170AQ8WVE7 144 aa13.8□□□□□ -0.2
CLN3-243ENST00000635973 C2orf50Q96LR7 162 aa13.8□□□□□ -0.2
CLN3-243ENST00000635973 ASCL2Q99929 193 aa13.8□□□□□ -0.2
CLN3-243ENST00000635973 CHRDL1Q9BU40 450 aa13.8□□□□□ -0.2
CLN3-243ENST00000635973 TENM3Q9P273 2699 aa13.79□□□□□ -0.2
CLN3-243ENST00000635973 SORL1Q92673 2214 aa13.79□□□□□ -0.2
CLN3-243ENST00000635973 C15orf62A8K5M9 175 aa13.79□□□□□ -0.2
CLN3-243ENST00000635973 LGALS9O00182 355 aa13.79□□□□□ -0.2
CLN3-243ENST00000635973 SLC25A4P12235 298 aa13.79□□□□□ -0.2
CLN3-243ENST00000635973 MLANAQ16655 118 aa13.79□□□□□ -0.2
CLN3-243ENST00000635973 SLC16A13Q7RTY0 426 aa13.79□□□□□ -0.2
CLN3-243ENST00000635973 OR4X1Q8NH49 305 aa13.79□□□□□ -0.2
CLN3-243ENST00000635973 PSENENQ9NZ42 101 aa13.79□□□□□ -0.2
CLN3-243ENST00000635973 STRAPQ9Y3F4 350 aaKnown RBP13.79□□□□□ -0.2
CLN3-243ENST00000635973 LSM5Q9Y4Y9 91 aaKnown RBP13.79□□□□□ -0.2
CLN3-243ENST00000635973 CTSGP08311 255 aa13.78□□□□□ -0.2
CLN3-243ENST00000635973 ADMP35318 185 aa13.78□□□□□ -0.2
CLN3-243ENST00000635973 RND2P52198 227 aa13.78□□□□□ -0.2
CLN3-243ENST00000635973 S100A10P60903 97 aa13.78□□□□□ -0.2
CLN3-243ENST00000635973 DYNLRB2Q8TF09 96 aa13.78□□□□□ -0.2
CLN3-243ENST00000635973 RAB40CQ96S21 281 aa13.78□□□□□ -0.2
CLN3-243ENST00000635973 C20orf24Q9BUV8 137 aa13.78□□□□□ -0.2
CLN3-243ENST00000635973 ZNF436Q9C0F3 470 aaPredicted RBP13.78□□□□□ -0.2
CLN3-243ENST00000635973 L7N2F9 121 aa13.77□□□□□ -0.21
CLN3-243ENST00000635973 NDUFA4O00483 81 aa13.77□□□□□ -0.21
CLN3-243ENST00000635973 CLN5O75503 358 aa13.77□□□□□ -0.21
CLN3-243ENST00000635973 YIF1AO95070 293 aa13.77□□□□□ -0.21
CLN3-243ENST00000635973 MBPP02686 304 aaPredicted RBP13.77□□□□□ -0.21
CLN3-243ENST00000635973 CSN3P07498 182 aa13.77□□□□□ -0.21
CLN3-243ENST00000635973 VAMP2P63027 116 aa13.77□□□□□ -0.21
CLN3-243ENST00000635973 UNQ9165/PRO28630Q6UXU0 137 aa13.77□□□□□ -0.21
CLN3-243ENST00000635973 HAPLN4Q86UW8 402 aa13.77□□□□□ -0.21
CLN3-243ENST00000635973 TMEM190Q8WZ59 177 aa13.77□□□□□ -0.21
CLN3-243ENST00000635973 ACY3Q96HD9 319 aa13.77□□□□□ -0.21
CLN3-243ENST00000635973 SLC35E1Q96K37 410 aa13.77□□□□□ -0.21
CLN3-243ENST00000635973 MRPL36Q9P0J6 103 aaKnown RBP13.77□□□□□ -0.21
CLN3-243ENST00000635973 RCL1Q9Y2P8 373 aaKnown RBP13.77□□□□□ -0.21
CLN3-243ENST00000635973 UFC1Q9Y3C8 167 aa13.77□□□□□ -0.21
CLN3-243ENST00000635973 C2orf70A6NJV1 201 aa13.76□□□□□ -0.21
CLN3-243ENST00000635973 A8MWP6 167 aa13.76□□□□□ -0.21
CLN3-243ENST00000635973 PRSS54Q6PEW0 395 aa13.76□□□□□ -0.21
CLN3-243ENST00000635973 SMIM8Q96KF7 97 aa13.76□□□□□ -0.21
CLN3-243ENST00000635973 ALG5Q9Y673 324 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms