RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 C11orf44Q8N8P7 122 aa11.48□□□□□ -0.57
LIMS3-206ENST00000631420 NECAP1Q8NC96 275 aa11.48□□□□□ -0.57
LIMS3-206ENST00000631420 OR1S2Q8NGQ3 325 aa11.48□□□□□ -0.57
LIMS3-206ENST00000631420 SLA2Q9H6Q3 261 aa11.48□□□□□ -0.57
LIMS3-206ENST00000631420 THYN1Q9P016 225 aa11.48□□□□□ -0.57
LIMS3-206ENST00000631420 FBXL17Q9UF56 701 aa11.48□□□□□ -0.57
LIMS3-206ENST00000631420 TMEM89A2RUT3 159 aa11.47□□□□□ -0.57
LIMS3-206ENST00000631420 IGHV3-11P01762 117 aa11.47□□□□□ -0.57
LIMS3-206ENST00000631420 HBG1P69891 147 aa11.47□□□□□ -0.57
LIMS3-206ENST00000631420 HBG2P69892 147 aa11.47□□□□□ -0.57
LIMS3-206ENST00000631420 ATP5G2Q06055 141 aa11.47□□□□□ -0.57
LIMS3-206ENST00000631420 TMUB2Q71RG4 321 aa11.47□□□□□ -0.57
LIMS3-206ENST00000631420 RNF152Q8N8N0 203 aa11.47□□□□□ -0.57
LIMS3-206ENST00000631420 BOLA1Q9Y3E2 137 aa11.47□□□□□ -0.57
LIMS3-206ENST00000631420 A0A0D9SG52 128 aa11.46□□□□□ -0.57
LIMS3-206ENST00000631420 SMCO3A2RU48 225 aa11.46□□□□□ -0.57
LIMS3-206ENST00000631420 FAM223BA6NKX1 122 aa11.46□□□□□ -0.57
LIMS3-206ENST00000631420 CD28P10747 220 aa11.46□□□□□ -0.57
LIMS3-206ENST00000631420 DLK1P80370 383 aa11.46□□□□□ -0.57
LIMS3-206ENST00000631420 ZNF345Q14585 488 aa11.46□□□□□ -0.57
LIMS3-206ENST00000631420 ACSM6Q6P461 480 aa11.46□□□□□ -0.57
LIMS3-206ENST00000631420 FAM223AQ8IWN6 122 aa11.46□□□□□ -0.57
LIMS3-206ENST00000631420 LILRB2Q8N423 598 aa11.46□□□□□ -0.57
LIMS3-206ENST00000631420 COMMD1Q8N668 190 aa11.46□□□□□ -0.57
LIMS3-206ENST00000631420 CACNG8Q8WXS5 425 aa11.46□□□□□ -0.57
LIMS3-206ENST00000631420 NPIPB3Q92617 1050 aa11.46□□□□□ -0.57
LIMS3-206ENST00000631420 ACY3Q96HD9 319 aa11.46□□□□□ -0.57
LIMS3-206ENST00000631420 ARL6Q9H0F7 186 aa11.46□□□□□ -0.57
LIMS3-206ENST00000631420 RPS10-NUDT3A0A1W2PQS6 291 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 F8W735 103 aaPredicted RBP11.45□□□□□ -0.58
LIMS3-206ENST00000631420 RND2P52198 227 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 FOXL1Q12952 345 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 ATP6V1FQ16864 119 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 ETFRF1Q6IPR1 90 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 C18orf65Q6ZTR6 163 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 ZNF491Q8N8L2 437 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 UBAC2Q8NBM4 344 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 ZNF502Q8TBZ5 544 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 MYOZ3Q8TDC0 251 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 VN1R17PQ8TDU5 208 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 USMG5Q96IX5 58 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 OR5B12Q96R08 314 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 GGACTQ9BVM4 153 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 GNB4Q9HAV0 340 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 CYTL1Q9NRR1 136 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 C21orf62Q9NYP8 219 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 VWC2Q2TAL6 325 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 TREML4Q6UXN2 200 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 OR4X2Q8NGF9 303 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 SLC35E1Q96K37 410 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 CCDC140Q96MF4 163 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 TMEM147Q9BVK8 224 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 UQCC1Q9NVA1 299 aa11.45□□□□□ -0.58
LIMS3-206ENST00000631420 IGKV1OR2-108A0A075B7D4 117 aa11.44□□□□□ -0.58
LIMS3-206ENST00000631420 A0A1B0GUS0 222 aa11.44□□□□□ -0.58
LIMS3-206ENST00000631420 SCAF4O95104 1147 aaKnown RBP11.44□□□□□ -0.58
LIMS3-206ENST00000631420 MFAP4P55083 255 aa11.44□□□□□ -0.58
LIMS3-206ENST00000631420 AWAT1Q58HT5 328 aa11.44□□□□□ -0.58
LIMS3-206ENST00000631420 RPL7L1Q6DKI1 246 aaKnown RBP11.44□□□□□ -0.58
LIMS3-206ENST00000631420 CLEC19AQ6UXS0 136 aa11.44□□□□□ -0.58
LIMS3-206ENST00000631420 TMEM116Q8NCL8 245 aa11.44□□□□□ -0.58
LIMS3-206ENST00000631420 OR4X1Q8NH49 305 aa11.44□□□□□ -0.58
LIMS3-206ENST00000631420 EEF1AKMT3Q96AZ1 226 aa11.44□□□□□ -0.58
LIMS3-206ENST00000631420 PPP1R14BQ96C90 147 aa11.44□□□□□ -0.58
LIMS3-206ENST00000631420 CXorf58Q96LI9 332 aa11.44□□□□□ -0.58
LIMS3-206ENST00000631420 ATP5SQ99766 215 aa11.44□□□□□ -0.58
LIMS3-206ENST00000631420 ARPC5LQ9BPX5 153 aa11.44□□□□□ -0.58
LIMS3-206ENST00000631420 C19orf24Q9BVV8 132 aa11.44□□□□□ -0.58
LIMS3-206ENST00000631420 NPVFQ9HCQ7 196 aa11.44□□□□□ -0.58
LIMS3-206ENST00000631420 FBN1P35555 2871 aaKnown RBP11.43□□□□□ -0.58
LIMS3-206ENST00000631420 A0A0G2JLM5 398 aa11.43□□□□□ -0.58
LIMS3-206ENST00000631420 UBE2L5PA0A1B0GUS4 154 aa11.43□□□□□ -0.58
LIMS3-206ENST00000631420 TRBV12-3P01733 135 aa11.43□□□□□ -0.58
LIMS3-206ENST00000631420 CLEC3BP05452 202 aa11.43□□□□□ -0.58
LIMS3-206ENST00000631420 AKR1C1Q04828 323 aa11.43□□□□□ -0.58
LIMS3-206ENST00000631420 Q56UQ5 140 aa11.43□□□□□ -0.58
LIMS3-206ENST00000631420 CITED2Q99967 270 aaPredicted RBP11.43□□□□□ -0.58
LIMS3-206ENST00000631420 IGKV1D-37A0A075B6S9 117 aa11.42□□□□□ -0.58
LIMS3-206ENST00000631420 KANTRA0A1W2PQU2 76 aa11.42□□□□□ -0.58
LIMS3-206ENST00000631420 TCRBV4S1A1TA0A5B7 111 aa11.42□□□□□ -0.58
LIMS3-206ENST00000631420 ANKRD34BA5PLL1 514 aa11.42□□□□□ -0.58
LIMS3-206ENST00000631420 OR2T8A6NH00 312 aa11.42□□□□□ -0.58
LIMS3-206ENST00000631420 FNDC10F2Z333 226 aa11.42□□□□□ -0.58
LIMS3-206ENST00000631420 BCL2L11O43521 198 aa11.42□□□□□ -0.58
LIMS3-206ENST00000631420 CLN5O75503 358 aa11.42□□□□□ -0.58
LIMS3-206ENST00000631420 DFFBO76075 338 aa11.42□□□□□ -0.58
LIMS3-206ENST00000631420 GPR183P32249 361 aa11.42□□□□□ -0.58
LIMS3-206ENST00000631420 OPCMLQ14982 345 aa11.42□□□□□ -0.58
LIMS3-206ENST00000631420 KHDC1LQ5JSQ8 128 aa11.42□□□□□ -0.58
LIMS3-206ENST00000631420 ZNF343Q6P1L6 599 aa11.42□□□□□ -0.58
LIMS3-206ENST00000631420 TMEM144Q7Z5S9 345 aa11.42□□□□□ -0.58
LIMS3-206ENST00000631420 UBE2E2Q96LR5 201 aa11.42□□□□□ -0.58
LIMS3-206ENST00000631420 RFNGQ9Y644 331 aa11.42□□□□□ -0.58
LIMS3-206ENST00000631420 TRBV7-1A0A0A6YYK4 115 aa11.41□□□□□ -0.58
LIMS3-206ENST00000631420 TAAR5O14804 337 aa11.41□□□□□ -0.58
LIMS3-206ENST00000631420 NPBWR1P48145 328 aa11.41□□□□□ -0.58
LIMS3-206ENST00000631420 WFDC12Q8WWY7 111 aa11.41□□□□□ -0.58
LIMS3-206ENST00000631420 CHRDL1Q9BU40 450 aa11.41□□□□□ -0.58
LIMS3-206ENST00000631420 WDR61Q9GZS3 305 aaKnown RBP11.41□□□□□ -0.58
LIMS3-206ENST00000631420 WDR83OSQ9Y284 106 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms