RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-229ENST00000622668 LINC01587Q99440 93 aa7.35□□□□□ -1.23
HDAC9-229ENST00000622668 GSX1Q9H4S2 264 aaPredicted RBP7.35□□□□□ -1.23
HDAC9-229ENST00000622668 H7BYZ3 331 aa7.34□□□□□ -1.23
HDAC9-229ENST00000622668 MPDU1O75352 247 aa7.34□□□□□ -1.23
HDAC9-229ENST00000622668 RNF224P0DH78 156 aa7.34□□□□□ -1.23
HDAC9-229ENST00000622668 DIAPH2-AS1Q14236 149 aa7.34□□□□□ -1.23
HDAC9-229ENST00000622668 SCARB1Q8WTV0 552 aa7.34□□□□□ -1.23
HDAC9-229ENST00000622668 ASB13Q8WXK3 278 aa7.34□□□□□ -1.23
HDAC9-229ENST00000622668 MCRIP2Q9BUT9 160 aaKnown RBP7.34□□□□□ -1.23
HDAC9-229ENST00000622668 ALX4Q9H161 411 aaPredicted RBP7.34□□□□□ -1.23
HDAC9-229ENST00000622668 BET1LQ9NYM9 111 aa7.34□□□□□ -1.23
HDAC9-229ENST00000622668 C1QBP02746 253 aa7.34□□□□□ -1.23
HDAC9-229ENST00000622668 GNG4P50150 75 aa7.34□□□□□ -1.23
HDAC9-229ENST00000622668 MST1LQ2TV78 715 aa7.34□□□□□ -1.23
HDAC9-229ENST00000622668 C11orf53Q8IXP5 236 aa7.34□□□□□ -1.23
HDAC9-229ENST00000622668 TMEM167AQ8TBQ9 72 aa7.34□□□□□ -1.23
HDAC9-229ENST00000622668 WFDC12Q8WWY7 111 aa7.34□□□□□ -1.23
HDAC9-229ENST00000622668 SGK494Q96LW2 274 aa7.34□□□□□ -1.23
HDAC9-229ENST00000622668 GFI1Q99684 422 aa7.34□□□□□ -1.23
HDAC9-229ENST00000622668 LINC00473A8K010 186 aa7.34□□□□□ -1.23
HDAC9-229ENST00000622668 ATP6V1G1O75348 118 aa7.34□□□□□ -1.23
HDAC9-229ENST00000622668 NDPQ00604 133 aa7.34□□□□□ -1.23
HDAC9-229ENST00000622668 ZNF90Q03938 601 aa7.34□□□□□ -1.23
HDAC9-229ENST00000622668 PSMG4Q5JS54 123 aa7.34□□□□□ -1.23
HDAC9-229ENST00000622668 LINC00305Q7Z4B0 112 aa7.34□□□□□ -1.23
HDAC9-229ENST00000622668 ZFP82Q8N141 532 aa7.34□□□□□ -1.23
HDAC9-229ENST00000622668 RPRMQ9NS64 109 aa7.34□□□□□ -1.23
HDAC9-229ENST00000622668 TEX50A0A1B0GTY4 177 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 AREGP15514 252 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 CXCL3P19876 107 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 C17orf58Q2M2W7 97 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 ZNF295-AS1Q8N0V1 137 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 PSMG3-AS1Q96PY0 264 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 TBX15Q96SF7 602 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 CLPSL1A2RUU4 121 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 ZNF705GA8MUZ8 300 aaPredicted RBP7.33□□□□□ -1.24
HDAC9-229ENST00000622668 OR11H12B2RN74 326 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 LINC01619G3V211 115 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 M6PRP20645 277 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 DEFB136Q30KP8 78 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 RNASEH2CQ8TDP1 164 aaKnown RBP7.33□□□□□ -1.24
HDAC9-229ENST00000622668 RNF125Q96EQ8 232 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 CTDSP1Q9GZU7 261 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 URGCP-MRPS24S4R325 110 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 UNC80Q8N2C7 3258 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 DNAJC9-AS1A6NH13 148 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 FOXI3A8MTJ6 420 aaPredicted RBP7.33□□□□□ -1.24
HDAC9-229ENST00000622668 SNURFLB1AK76 121 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 SPINK4O60575 86 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 MGPP08493 103 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 LGALSLQ3ZCW2 172 aaPredicted RBP7.33□□□□□ -1.24
HDAC9-229ENST00000622668 SPANXN1Q5VSR9 72 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 CYP2G1PQ6ZSU1 146 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 STPG2Q8N412 459 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 C5orf17Q8NAS9 161 aa7.33□□□□□ -1.24
HDAC9-229ENST00000622668 MBNL3Q9NUK0 354 aaKnown RBP7.33□□□□□ -1.24
HDAC9-229ENST00000622668 TSSC4Q9Y5U2 329 aaPredicted RBP7.33□□□□□ -1.24
HDAC9-229ENST00000622668 TRGV2A0A075B6R0 118 aa7.32□□□□□ -1.24
HDAC9-229ENST00000622668 ELOA3CA0A087WX78 387 aaPredicted RBP7.32□□□□□ -1.24
HDAC9-229ENST00000622668 TRAV3A0A0B4J244 114 aa7.32□□□□□ -1.24
HDAC9-229ENST00000622668 IGFBP2P18065 325 aa7.32□□□□□ -1.24
HDAC9-229ENST00000622668 ATP6V0CP27449 155 aa7.32□□□□□ -1.24
HDAC9-229ENST00000622668 TAGLN2P37802 199 aaKnown RBP7.32□□□□□ -1.24
HDAC9-229ENST00000622668 RND3P61587 244 aa7.32□□□□□ -1.24
HDAC9-229ENST00000622668 PRCDQ00LT1 54 aa7.32□□□□□ -1.24
HDAC9-229ENST00000622668 C8orf86Q6ZUL3 223 aa7.32□□□□□ -1.24
HDAC9-229ENST00000622668 CHD6Q8TD26 2715 aa7.32□□□□□ -1.24
HDAC9-229ENST00000622668 CHD3Q12873 2000 aaKnown RBP7.32□□□□□ -1.24
HDAC9-229ENST00000622668 FGF16O43320 207 aa7.32□□□□□ -1.24
HDAC9-229ENST00000622668 OR5AC2Q9NZP5 309 aa7.32□□□□□ -1.24
HDAC9-229ENST00000622668 C9JCJ5 164 aa7.32□□□□□ -1.24
HDAC9-229ENST00000622668 FCN1O00602 326 aa7.32□□□□□ -1.24
HDAC9-229ENST00000622668 C8orf88P0DMB2 117 aa7.32□□□□□ -1.24
HDAC9-229ENST00000622668 ICAM4Q14773 271 aa7.32□□□□□ -1.24
HDAC9-229ENST00000622668 FAM159AQ6UWV7 190 aa7.32□□□□□ -1.24
HDAC9-229ENST00000622668 TMEM116Q8NCL8 245 aa7.32□□□□□ -1.24
HDAC9-229ENST00000622668 OR1P1Q8NH06 330 aa7.32□□□□□ -1.24
HDAC9-229ENST00000622668 TAF15Q92804 592 aaKnown RBP eCLIP7.32□□□□□ -1.24
HDAC9-229ENST00000622668 GALNT14Q96FL9 552 aa7.32□□□□□ -1.24
HDAC9-229ENST00000622668 PAGE4O60829 102 aa7.32□□□□□ -1.24
HDAC9-229ENST00000622668 PQLC2Q6ZP29 291 aa7.32□□□□□ -1.24
HDAC9-229ENST00000622668 GATAD1Q8WUU5 269 aa7.32□□□□□ -1.24
HDAC9-229ENST00000622668 CACNG8Q8WXS5 425 aa7.32□□□□□ -1.24
HDAC9-229ENST00000622668 CXorf1O96002 111 aa7.31□□□□□ -1.24
HDAC9-229ENST00000622668 ELANEP08246 267 aa7.31□□□□□ -1.24
HDAC9-229ENST00000622668 SRSF4Q08170 494 aaKnown RBP7.31□□□□□ -1.24
HDAC9-229ENST00000622668 BAGE2Q86Y30 109 aa7.31□□□□□ -1.24
HDAC9-229ENST00000622668 C11orf94C9JXX5 98 aa7.31□□□□□ -1.24
HDAC9-229ENST00000622668 LEMD1Q68G75 181 aa7.31□□□□□ -1.24
HDAC9-229ENST00000622668 SPSB3Q6PJ21 355 aa7.31□□□□□ -1.24
HDAC9-229ENST00000622668 ASCL4Q6XD76 172 aa7.31□□□□□ -1.24
HDAC9-229ENST00000622668 UBE2DNLQ8IWF7 75 aa7.31□□□□□ -1.24
HDAC9-229ENST00000622668 SMIM8Q96KF7 97 aa7.31□□□□□ -1.24
HDAC9-229ENST00000622668 OR51M1Q9H341 326 aa7.31□□□□□ -1.24
HDAC9-229ENST00000622668 GATCO43716 136 aaKnown RBP7.31□□□□□ -1.24
HDAC9-229ENST00000622668 NHLRC2Q8NBF2 726 aa7.31□□□□□ -1.24
HDAC9-229ENST00000622668 MARC2Q969Z3 335 aa7.31□□□□□ -1.24
HDAC9-229ENST00000622668 DSPP15924 2871 aaKnown RBP7.31□□□□□ -1.24
HDAC9-229ENST00000622668 LRP4O75096 1905 aa7.31□□□□□ -1.24
HDAC9-229ENST00000622668 CTXND1A0A1B0GTU2 59 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms