RNA–Protein interactions for RNA: ENST00000616053.4

TCF4-248, Transcript of transcription factor 4, humanhuman

TSL 5 BASIC

Gene TCF4, Length 8,140 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-248ENST00000616053 AMBPP02760 352 aa10.6□□□□□ -0.71
TCF4-248ENST00000616053 GCHFRP30047 84 aa10.6□□□□□ -0.71
TCF4-248ENST00000616053 A0A1B0GW15 77 aa10.6□□□□□ -0.71
TCF4-248ENST00000616053 FAM90A10PA6NDY2 464 aa10.6□□□□□ -0.71
TCF4-248ENST00000616053 FAM90A8PA6NJQ4 464 aa10.6□□□□□ -0.71
TCF4-248ENST00000616053 SRRM4A7MD48 611 aaKnown RBP10.6□□□□□ -0.71
TCF4-248ENST00000616053 F12P00748 615 aaPredicted RBP10.6□□□□□ -0.71
TCF4-248ENST00000616053 UMODP07911 640 aa10.6□□□□□ -0.71
TCF4-248ENST00000616053 FAM90A13PP0C7W8 464 aa10.6□□□□□ -0.71
TCF4-248ENST00000616053 FAM90A24PP0C7X0 464 aa10.6□□□□□ -0.71
TCF4-248ENST00000616053 VSIG8P0DPA2 414 aa10.6□□□□□ -0.71
TCF4-248ENST00000616053 RPL18AQ02543 176 aaKnown RBP10.6□□□□□ -0.71
TCF4-248ENST00000616053 OR8D4Q8NGM9 314 aa10.6□□□□□ -0.71
TCF4-248ENST00000616053 FAM90A26D6RGX4 464 aa10.6□□□□□ -0.71
TCF4-248ENST00000616053 SLC25A45Q8N413 288 aa10.6□□□□□ -0.71
TCF4-248ENST00000616053 COX14Q96I36 57 aa10.6□□□□□ -0.71
TCF4-248ENST00000616053 VCYO14598 125 aa10.59□□□□□ -0.71
TCF4-248ENST00000616053 LINC00518Q8N0U6 118 aa10.59□□□□□ -0.71
TCF4-248ENST00000616053 LINC00312Q9Y6C7 94 aa10.59□□□□□ -0.71
TCF4-248ENST00000616053 TOPAZ1Q8N9V7 1692 aa10.59□□□□□ -0.71
TCF4-248ENST00000616053 C12orf73Q69YU5 71 aa10.59□□□□□ -0.71
TCF4-248ENST00000616053 TMEM222Q9H0R3 208 aa10.59□□□□□ -0.71
TCF4-248ENST00000616053 C4AP0C0L4 1744 aa10.59□□□□□ -0.71
TCF4-248ENST00000616053 C4BP0C0L5 1744 aa10.59□□□□□ -0.71
TCF4-248ENST00000616053 RNF125Q96EQ8 232 aa10.59□□□□□ -0.71
TCF4-248ENST00000616053 FANCD2OSQ96PS1 177 aa10.59□□□□□ -0.71
TCF4-248ENST00000616053 ANAPC13Q9BS18 74 aa10.59□□□□□ -0.71
TCF4-248ENST00000616053 ZNF142P52746 1687 aaPredicted RBP10.59□□□□□ -0.71
TCF4-248ENST00000616053 ST6GALNAC3Q8NDV1 305 aa10.59□□□□□ -0.71
TCF4-248ENST00000616053 KLK13Q9UKR3 277 aa10.59□□□□□ -0.71
TCF4-248ENST00000616053 KIF13BQ9NQT8 1826 aa10.59□□□□□ -0.71
TCF4-248ENST00000616053 LTN1O94822 1766 aa10.59□□□□□ -0.71
TCF4-248ENST00000616053 TIRAPP58753 221 aa10.59□□□□□ -0.71
TCF4-248ENST00000616053 RIPPLY2Q5TAB7 128 aa10.59□□□□□ -0.71
TCF4-248ENST00000616053 FAM90A2PQ658T7 463 aa10.59□□□□□ -0.71
TCF4-248ENST00000616053 C5orf30Q96GV9 206 aa10.59□□□□□ -0.71
TCF4-248ENST00000616053 IGHV2OR16-5A0A0B4J2B6 119 aa10.58□□□□□ -0.72
TCF4-248ENST00000616053 GATA6Q92908 595 aa10.58□□□□□ -0.72
TCF4-248ENST00000616053 PVRIGQ6DKI7 326 aa10.58□□□□□ -0.72
TCF4-248ENST00000616053 ZNF474Q6S9Z5 364 aaPredicted RBP10.58□□□□□ -0.72
TCF4-248ENST00000616053 GPHA2Q96T91 129 aa10.58□□□□□ -0.72
TCF4-248ENST00000616053 PSG7Q13046 419 aa10.58□□□□□ -0.72
TCF4-248ENST00000616053 GAGE2AQ6NT46 116 aa10.58□□□□□ -0.72
TCF4-248ENST00000616053 ZNF479Q96JC4 524 aa10.58□□□□□ -0.72
TCF4-248ENST00000616053 C17orf77Q96MU5 243 aa10.58□□□□□ -0.72
TCF4-248ENST00000616053 TMEM133Q9H2Q1 129 aa10.58□□□□□ -0.72
TCF4-248ENST00000616053 TRBV25-1A0A075B6N4 114 aa10.58□□□□□ -0.72
TCF4-248ENST00000616053 DPM2O94777 84 aa10.58□□□□□ -0.72
TCF4-248ENST00000616053 XCL2Q9UBD3 114 aa10.58□□□□□ -0.72
TCF4-248ENST00000616053 GALP22466 123 aa10.58□□□□□ -0.72
TCF4-248ENST00000616053 C8orf31Q8N9H6 132 aa10.58□□□□□ -0.72
TCF4-248ENST00000616053 NHP2Q9NX24 153 aaKnown RBP10.58□□□□□ -0.72
TCF4-248ENST00000616053 TMEM187Q14656 261 aa10.58□□□□□ -0.72
TCF4-248ENST00000616053 DMRTC2Q8IXT2 367 aaPredicted RBP10.58□□□□□ -0.72
TCF4-248ENST00000616053 DSCR8Q96T75 97 aa10.58□□□□□ -0.72
TCF4-248ENST00000616053 LRCOL1A6NCL2 159 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 NPIPB13A6NJU9 1138 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 NPIPB5A8MRT5 1133 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 C5orf67F2Z3F1 127 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 NDUFB1O75438 58 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 COX5BP10606 129 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 SRXN1Q9BYN0 137 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 A0A096LPF7 62 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 PRSS29PA6NIE9 313 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 PRSS23O95084 383 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 FGF9P31371 208 aaPredicted RBP10.57□□□□□ -0.72
TCF4-248ENST00000616053 UBE2AP49459 152 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 CCL3L1P16619 93 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 PMVKQ15126 192 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 RBM38Q9H0Z9 239 aaKnown RBP10.57□□□□□ -0.72
TCF4-248ENST00000616053 LSM4Q9Y4Z0 139 aaKnown RBP10.57□□□□□ -0.72
TCF4-248ENST00000616053 DOCK4Q8N1I0 1966 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 C15orf32Q32M92 178 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.57□□□□□ -0.72
TCF4-248ENST00000616053 SLIRPQ9GZT3 109 aaKnown RBP10.57□□□□□ -0.72
TCF4-248ENST00000616053 NOTCH3Q9UM47 2321 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 PFN2P35080 140 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 CRYBA2P53672 197 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 SUPT4H1P63272 117 aaKnown RBP10.57□□□□□ -0.72
TCF4-248ENST00000616053 FAM90A18PA6NE21 464 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 FAM90A16PA6NEW6 464 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 FAM90A20PA6NIJ5 464 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 FAM90A7PA6NKC0 464 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 FAM90A22PA8MWA6 464 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 FAM90A12PA8MX19 464 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 FAM90A5PA8MXJ8 464 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 FAM90A23PA8MXZ1 464 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 SLC17A3O00476 420 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 MLNRO43193 412 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 FAM90A15PP0C7V4 464 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 FAM90A14PP0C7W9 464 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 MARVELD1Q9BSK0 173 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 PLXNB1O43157 2135 aa10.57□□□□□ -0.72
TCF4-248ENST00000616053 FAM90A9PA6NNJ1 464 aa10.56□□□□□ -0.72
TCF4-248ENST00000616053 ANGP03950 147 aaKnown RBP10.56□□□□□ -0.72
TCF4-248ENST00000616053 SYNJ2BPP57105 145 aa10.56□□□□□ -0.72
TCF4-248ENST00000616053 EML6Q6ZMW3 1958 aa10.56□□□□□ -0.72
TCF4-248ENST00000616053 IGF2BP2-AS1Q96M15 143 aa10.56□□□□□ -0.72
TCF4-248ENST00000616053 OTORQ9NRC9 128 aa10.56□□□□□ -0.72
TCF4-248ENST00000616053 FMN2Q9NZ56 1722 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms