RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 DIAPH2-AS1Q14236 149 aa7.31□□□□□ -1.24
PDLIM5-222ENST00000615540 C17orf58Q2M2W7 97 aa7.31□□□□□ -1.24
PDLIM5-222ENST00000615540 TMEM14EPQ6UXP3 125 aa7.31□□□□□ -1.24
PDLIM5-222ENST00000615540 SSBP4Q9BWG4 385 aaPredicted RBP7.31□□□□□ -1.24
PDLIM5-222ENST00000615540 ZFHX4Q86UP3 3567 aa7.31□□□□□ -1.24
PDLIM5-222ENST00000615540 HLA-DRB1P01911 266 aa7.31□□□□□ -1.24
PDLIM5-222ENST00000615540 SPATA45Q537H7 98 aa7.31□□□□□ -1.24
PDLIM5-222ENST00000615540 PPP1R27Q86WC6 154 aa7.31□□□□□ -1.24
PDLIM5-222ENST00000615540 NBR2O15453 112 aa7.31□□□□□ -1.24
PDLIM5-222ENST00000615540 SSC4DQ8WTU2 575 aa7.31□□□□□ -1.24
PDLIM5-222ENST00000615540 NEU4Q8WWR8 484 aaPredicted RBP7.31□□□□□ -1.24
PDLIM5-222ENST00000615540 IGHV1-3A0A0C4DH29 117 aa7.31□□□□□ -1.24
PDLIM5-222ENST00000615540 TMEM250H0YL14 139 aa7.31□□□□□ -1.24
PDLIM5-222ENST00000615540 KLHDC1Q8N7A1 406 aa7.31□□□□□ -1.24
PDLIM5-222ENST00000615540 PRO3102Q9H379 93 aa7.31□□□□□ -1.24
PDLIM5-222ENST00000615540 ERVK11-1P61568 191 aa7.31□□□□□ -1.24
PDLIM5-222ENST00000615540 SLC25A48Q6ZT89 311 aaKnown RBP7.31□□□□□ -1.24
PDLIM5-222ENST00000615540 OCC1Q8TAD7 63 aa7.31□□□□□ -1.24
PDLIM5-222ENST00000615540 NBEAP1P0C6P0 100 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 PSG9Q00887 426 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 ZNF726P1Q15940 193 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 C19orf35Q6ZS72 473 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 TMEM183AQ8IXX5 376 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 MMP23AO75900 390 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 SPSB3Q6PJ21 355 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 LYPD6Q86Y78 171 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 MBD3L1Q8WWY6 194 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 GOLT1BQ9Y3E0 138 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 TCRBV4S1A1TA0A5B7 111 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 IGHV3-11P01762 117 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 FAM168AQ92567 244 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 BET1LQ9NYM9 111 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 IGKV3-20P01619 116 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 FOXA3P55318 350 aaPredicted RBP7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 KLF17Q5JT82 389 aaPredicted RBP7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 HEPN1Q6WQI6 88 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 TMEM144Q7Z5S9 345 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 TMEM219Q86XT9 240 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 RNASEH2CQ8TDP1 164 aaKnown RBP7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 EEF1AKMT3Q96AZ1 226 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 MBNL3Q9NUK0 354 aaKnown RBP7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 FAM90A9PA6NNJ1 464 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 VENTXO95231 258 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 TRGV3P03979 118 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 C11orf53Q8IXP5 236 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 WDR83OSQ9Y284 106 aa7.3□□□□□ -1.24
PDLIM5-222ENST00000615540 PTTG1IPP53801 180 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 SPANXN1Q5VSR9 72 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 ZNF841Q6ZN19 808 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 TXNDC17Q9BRA2 123 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 C19orf24Q9BVV8 132 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 CD69Q07108 199 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 VAMP3Q15836 100 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 PMCHL1Q16048 86 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 C15orf65H3BRN8 121 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 GRNP28799 593 aaKnown RBP7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 FAM209BQ5JX69 171 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 TCF24Q7RTU0 167 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 A8MWL6 223 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 HIST1H2BKO60814 126 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 GGCTO75223 188 aaKnown RBP7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 HIST1H2BJP06899 126 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 PRSS1P07477 247 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 HIST1H2BOP23527 126 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 HIST1H2BBP33778 126 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 HIST1H2BDP58876 126 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 HIST1H2BCP62807 126 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 HIST2H2BEQ16778 126 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 RBPMS2Q6ZRY4 209 aaKnown RBP7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 HAPLN4Q86UW8 402 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 HIST1H2BHQ93079 126 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 HIST1H2BNQ99877 126 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 HIST1H2BMQ99879 126 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 TRAV30A0A087WSZ9 112 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 TCAPO15273 167 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 BMI1P35226 326 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 MAS1LP35410 378 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 TMEM78Q5T7P6 136 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 FAM19A2Q8N3H0 131 aa7.29□□□□□ -1.24
PDLIM5-222ENST00000615540 BUB1B-PAK6H3BSN5 160 aa7.28□□□□□ -1.24
PDLIM5-222ENST00000615540 K7ENP7 123 aa7.28□□□□□ -1.24
PDLIM5-222ENST00000615540 IGLV1-44P01699 117 aa7.28□□□□□ -1.24
PDLIM5-222ENST00000615540 CFAP54Q96N23 3096 aa7.28□□□□□ -1.24
PDLIM5-222ENST00000615540 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.28□□□□□ -1.24
PDLIM5-222ENST00000615540 GPX4P36969 197 aaPredicted RBP7.28□□□□□ -1.24
PDLIM5-222ENST00000615540 CX3CL1P78423 397 aa7.28□□□□□ -1.24
PDLIM5-222ENST00000615540 SSBP2P81877 361 aaPredicted RBP7.28□□□□□ -1.24
PDLIM5-222ENST00000615540 DPF1Q92782 380 aa7.28□□□□□ -1.24
PDLIM5-222ENST00000615540 GZMBP10144 247 aa7.28□□□□□ -1.24
PDLIM5-222ENST00000615540 GSN-AS1Q9NRJ2 163 aa7.28□□□□□ -1.24
PDLIM5-222ENST00000615540 OR4C46A6NHA9 309 aa7.28□□□□□ -1.24
PDLIM5-222ENST00000615540 PAFAH1B2P68402 229 aa7.28□□□□□ -1.24
PDLIM5-222ENST00000615540 TM4SF20Q53R12 229 aa7.28□□□□□ -1.24
PDLIM5-222ENST00000615540 IGFL4Q6B9Z1 124 aa7.28□□□□□ -1.24
PDLIM5-222ENST00000615540 FMC1Q96HJ9 113 aa7.28□□□□□ -1.24
PDLIM5-222ENST00000615540 SCRT1Q9BWW7 348 aa7.28□□□□□ -1.24
PDLIM5-222ENST00000615540 SPRY4Q9C004 299 aa7.28□□□□□ -1.24
PDLIM5-222ENST00000615540 TPSG1Q9NRR2 321 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms