RNA–Protein interactions for RNA: ENST00000600031.1

VRK3-218, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,110 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-218ENST00000600031 PFDN5Q99471 154 aa12.16□□□□□ -0.46
VRK3-218ENST00000600031 GPR61Q9BZJ8 451 aa12.16□□□□□ -0.46
VRK3-218ENST00000600031 C7orf69Q9H7B7 122 aa12.16□□□□□ -0.46
VRK3-218ENST00000600031 PITPNC1Q9UKF7 332 aa12.16□□□□□ -0.46
VRK3-218ENST00000600031 FOXA2Q9Y261 457 aaPredicted RBP12.16□□□□□ -0.46
VRK3-218ENST00000600031 TBL2Q9Y4P3 447 aaKnown RBP12.16□□□□□ -0.46
VRK3-218ENST00000600031 UNC79Q9P2D8 2635 aa12.16□□□□□ -0.46
VRK3-218ENST00000600031 PRRC2AP48634 2157 aaKnown RBP12.16□□□□□ -0.46
VRK3-218ENST00000600031 PDZD2O15018 2839 aa12.16□□□□□ -0.46
VRK3-218ENST00000600031 CR1P17927 2039 aa12.16□□□□□ -0.46
VRK3-218ENST00000600031 IGHV3OR16-10A0A075B7F0 116 aa12.16□□□□□ -0.46
VRK3-218ENST00000600031 GATCO43716 136 aaKnown RBP12.16□□□□□ -0.46
VRK3-218ENST00000600031 VENTXO95231 258 aa12.16□□□□□ -0.46
VRK3-218ENST00000600031 MDKP21741 143 aaPredicted RBP12.16□□□□□ -0.46
VRK3-218ENST00000600031 C16orf82Q7Z2V1 217 aa12.16□□□□□ -0.46
VRK3-218ENST00000600031 ANAPC16Q96DE5 110 aa12.16□□□□□ -0.46
VRK3-218ENST00000600031 OR5B12Q96R08 314 aa12.16□□□□□ -0.46
VRK3-218ENST00000600031 SSX3Q99909 188 aa12.16□□□□□ -0.46
VRK3-218ENST00000600031 NPCDR1Q9BY65 106 aa12.16□□□□□ -0.46
VRK3-218ENST00000600031 PARLQ9H300 379 aa12.16□□□□□ -0.46
VRK3-218ENST00000600031 ITPR2Q14571 2701 aa12.15□□□□□ -0.46
VRK3-218ENST00000600031 NPFFO15130 113 aa12.15□□□□□ -0.46
VRK3-218ENST00000600031 SLC25A17O43808 307 aa12.15□□□□□ -0.46
VRK3-218ENST00000600031 CD24P25063 80 aa12.15□□□□□ -0.46
VRK3-218ENST00000600031 CD1BP29016 333 aa12.15□□□□□ -0.46
VRK3-218ENST00000600031 LGALS7P47929 136 aa12.15□□□□□ -0.46
VRK3-218ENST00000600031 SPCS3P61009 180 aa12.15□□□□□ -0.46
VRK3-218ENST00000600031 ACOT6Q3I5F7 207 aaPredicted RBP12.15□□□□□ -0.46
VRK3-218ENST00000600031 PDLIM3Q53GG5 364 aaPredicted RBP12.15□□□□□ -0.46
VRK3-218ENST00000600031 FBLN7Q53RD9 439 aa12.15□□□□□ -0.46
VRK3-218ENST00000600031 OR52E5Q8NH55 327 aa12.15□□□□□ -0.46
VRK3-218ENST00000600031 RPUSD4Q96CM3 377 aaKnown RBP12.15□□□□□ -0.46
VRK3-218ENST00000600031 TPSG1Q9NRR2 321 aa12.15□□□□□ -0.46
VRK3-218ENST00000600031 SMCO3A2RU48 225 aa12.14□□□□□ -0.47
VRK3-218ENST00000600031 OOSP1A8MZH6 123 aa12.14□□□□□ -0.47
VRK3-218ENST00000600031 H7BYZ3 331 aa12.14□□□□□ -0.47
VRK3-218ENST00000600031 GFI1BQ5VTD9 330 aa12.14□□□□□ -0.47
VRK3-218ENST00000600031 RUSC1-AS1Q66K80 236 aa12.14□□□□□ -0.47
VRK3-218ENST00000600031 CCDC144NLQ6NUI1 221 aa12.14□□□□□ -0.47
VRK3-218ENST00000600031 OR4F5Q8NH21 305 aa12.14□□□□□ -0.47
VRK3-218ENST00000600031 TMEM167AQ8TBQ9 72 aa12.14□□□□□ -0.47
VRK3-218ENST00000600031 RAB24Q969Q5 203 aa12.14□□□□□ -0.47
VRK3-218ENST00000600031 OR4F4Q96R69 305 aa12.14□□□□□ -0.47
VRK3-218ENST00000600031 PRNDQ9UKY0 176 aa12.14□□□□□ -0.47
VRK3-218ENST00000600031 TCF19Q9Y242 345 aa12.14□□□□□ -0.47
VRK3-218ENST00000600031 OR51B2Q9Y5P1 312 aa12.14□□□□□ -0.47
VRK3-218ENST00000600031 TRAV40A0A0B4J280 105 aa12.14□□□□□ -0.47
VRK3-218ENST00000600031 AVPP01185 164 aa12.14□□□□□ -0.47
VRK3-218ENST00000600031 HIST1H1BP16401 226 aaKnown RBP12.14□□□□□ -0.47
VRK3-218ENST00000600031 GALR1P47211 349 aa12.14□□□□□ -0.47
VRK3-218ENST00000600031 MRGPRG-AS1Q2M3A8 158 aa12.14□□□□□ -0.47
VRK3-218ENST00000600031 TMEM249Q2WGJ8 235 aa12.14□□□□□ -0.47
VRK3-218ENST00000600031 VSTM2AQ8TAG5 236 aa12.14□□□□□ -0.47
VRK3-218ENST00000600031 HECTD1Q9ULT8 2610 aa12.14□□□□□ -0.47
VRK3-218ENST00000600031 ZNF469Q96JG9 3925 aaPredicted RBP12.13□□□□□ -0.47
VRK3-218ENST00000600031 IGHV1-69DA0A0B4J2H0 117 aa12.13□□□□□ -0.47
VRK3-218ENST00000600031 HMGB3O15347 200 aaKnown RBP12.13□□□□□ -0.47
VRK3-218ENST00000600031 IGHV1-69P01742 117 aa12.13□□□□□ -0.47
VRK3-218ENST00000600031 IGHV4-31P0DP07 118 aa12.13□□□□□ -0.47
VRK3-218ENST00000600031 HSPE1P61604 102 aaKnown RBP12.13□□□□□ -0.47
VRK3-218ENST00000600031 RPP30P78346 268 aaKnown RBP12.13□□□□□ -0.47
VRK3-218ENST00000600031 PSG5Q15238 335 aa12.13□□□□□ -0.47
VRK3-218ENST00000600031 VMA21Q3ZAQ7 101 aa12.13□□□□□ -0.47
VRK3-218ENST00000600031 OR51G1Q8NGK1 321 aa12.13□□□□□ -0.47
VRK3-218ENST00000600031 OR4X1Q8NH49 305 aa12.13□□□□□ -0.47
VRK3-218ENST00000600031 ZANQ9Y493 2812 aa12.13□□□□□ -0.47
VRK3-218ENST00000600031 TEX50A0A1B0GTY4 177 aa12.13□□□□□ -0.47
VRK3-218ENST00000600031 CRYGBP07316 175 aa12.13□□□□□ -0.47
VRK3-218ENST00000600031 IGHV4-38-2P0DP08 117 aa12.13□□□□□ -0.47
VRK3-218ENST00000600031 GATA3P23771 443 aa12.13□□□□□ -0.47
VRK3-218ENST00000600031 VDAC2P45880 294 aaPredicted RBP12.13□□□□□ -0.47
VRK3-218ENST00000600031 CDC34P49427 236 aaPredicted RBP12.13□□□□□ -0.47
VRK3-218ENST00000600031 HNF4GQ14541 408 aa12.13□□□□□ -0.47
VRK3-218ENST00000600031 BRD3OSQ6XYD6 125 aa12.13□□□□□ -0.47
VRK3-218ENST00000600031 WFDC11Q8NEX6 87 aa12.13□□□□□ -0.47
VRK3-218ENST00000600031 OR4A5Q8NH83 315 aa12.13□□□□□ -0.47
VRK3-218ENST00000600031 ZNF430Q9H8G1 570 aaPredicted RBP12.13□□□□□ -0.47
VRK3-218ENST00000600031 WDR83OSQ9Y284 106 aa12.13□□□□□ -0.47
VRK3-218ENST00000600031 ZFHX3Q15911 3703 aa12.12□□□□□ -0.47
VRK3-218ENST00000600031 PLXNB1O43157 2135 aa12.12□□□□□ -0.47
VRK3-218ENST00000600031 C15orf62A8K5M9 175 aa12.12□□□□□ -0.47
VRK3-218ENST00000600031 PPP5D1E7EU14 171 aa12.12□□□□□ -0.47
VRK3-218ENST00000600031 TGFAP01135 160 aa12.12□□□□□ -0.47
VRK3-218ENST00000600031 FABP4P15090 132 aa12.12□□□□□ -0.47
VRK3-218ENST00000600031 RPL8P62917 257 aaKnown RBP12.12□□□□□ -0.47
VRK3-218ENST00000600031 PDZD11Q5EBL8 140 aa12.12□□□□□ -0.47
VRK3-218ENST00000600031 TMEM183AQ8IXX5 376 aa12.12□□□□□ -0.47
VRK3-218ENST00000600031 TEX45Q8NA69 505 aa12.12□□□□□ -0.47
VRK3-218ENST00000600031 EAF1Q96JC9 268 aaPredicted RBP12.12□□□□□ -0.47
VRK3-218ENST00000600031 RNF5Q99942 180 aa12.12□□□□□ -0.47
VRK3-218ENST00000600031 FKBP11Q9NYL4 201 aa12.12□□□□□ -0.47
VRK3-218ENST00000600031 ZNF257Q9Y2Q1 563 aa12.12□□□□□ -0.47
VRK3-218ENST00000600031 PAGE4O60829 102 aa12.11□□□□□ -0.47
VRK3-218ENST00000600031 MPDU1O75352 247 aa12.11□□□□□ -0.47
VRK3-218ENST00000600031 MOSP00540 346 aa12.11□□□□□ -0.47
VRK3-218ENST00000600031 HINT2Q9BX68 163 aa12.11□□□□□ -0.47
VRK3-218ENST00000600031 SIGLEC9Q9Y336 463 aa12.11□□□□□ -0.47
VRK3-218ENST00000600031 CCDC168Q8NDH2 2452 aa12.11□□□□□ -0.47
VRK3-218ENST00000600031 E7EUB6 86 aa12.11□□□□□ -0.47
VRK3-218ENST00000600031 SRP14P37108 136 aaKnown RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms