RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 SAMD13Q5VXD3 122 aa12.52□□□□□ -0.41
UPF1-204ENST00000596842 H3BTX0 84 aa12.52□□□□□ -0.41
UPF1-204ENST00000596842 BMPR1BO00238 502 aa12.52□□□□□ -0.41
UPF1-204ENST00000596842 OR2T6Q8NHC8 308 aa12.52□□□□□ -0.41
UPF1-204ENST00000596842 RNF114Q9Y508 228 aa12.52□□□□□ -0.41
UPF1-204ENST00000596842 CDX4O14627 284 aaPredicted RBP12.51□□□□□ -0.41
UPF1-204ENST00000596842 SAP30O75446 220 aa12.51□□□□□ -0.41
UPF1-204ENST00000596842 LOXL3P58215 753 aa12.51□□□□□ -0.41
UPF1-204ENST00000596842 RCHY1Q96PM5 261 aa12.51□□□□□ -0.41
UPF1-204ENST00000596842 SRRM5B3KS81 715 aa12.51□□□□□ -0.41
UPF1-204ENST00000596842 UBE2L3P68036 154 aaKnown RBP12.51□□□□□ -0.41
UPF1-204ENST00000596842 PRR7Q8TB68 274 aa12.51□□□□□ -0.41
UPF1-204ENST00000596842 C1orf159Q96HA4 380 aa12.51□□□□□ -0.41
UPF1-204ENST00000596842 FNDC4Q9H6D8 234 aaPredicted RBP12.51□□□□□ -0.41
UPF1-204ENST00000596842 KALRNO60229 2985 aa12.51□□□□□ -0.41
UPF1-204ENST00000596842 REG1AP05451 166 aa12.51□□□□□ -0.41
UPF1-204ENST00000596842 BLNKQ8WV28 456 aa12.51□□□□□ -0.41
UPF1-204ENST00000596842 H1FXQ92522 213 aaKnown RBP12.51□□□□□ -0.41
UPF1-204ENST00000596842 SPTBN1Q01082 2364 aaKnown RBP12.5□□□□□ -0.41
UPF1-204ENST00000596842 DPRXA6NFQ7 191 aa12.5□□□□□ -0.41
UPF1-204ENST00000596842 OR2T8A6NH00 312 aa12.5□□□□□ -0.41
UPF1-204ENST00000596842 YPEL1O60688 119 aa12.5□□□□□ -0.41
UPF1-204ENST00000596842 PYYP10082 97 aa12.5□□□□□ -0.41
UPF1-204ENST00000596842 PLP1P60201 277 aa12.5□□□□□ -0.41
UPF1-204ENST00000596842 IBA57Q5T440 356 aaKnown RBP12.5□□□□□ -0.41
UPF1-204ENST00000596842 SARAFQ96BY9 339 aa12.5□□□□□ -0.41
UPF1-204ENST00000596842 YPEL2Q96QA6 119 aa12.5□□□□□ -0.41
UPF1-204ENST00000596842 IDI2-AS1Q9NZ38 188 aa12.5□□□□□ -0.41
UPF1-204ENST00000596842 FBXL7Q9UJT9 491 aa12.5□□□□□ -0.41
UPF1-204ENST00000596842 COX11Q9Y6N1 276 aa12.5□□□□□ -0.41
UPF1-204ENST00000596842 APC2O95996 2303 aa12.5□□□□□ -0.41
UPF1-204ENST00000596842 BMI1P35226 326 aa12.5□□□□□ -0.41
UPF1-204ENST00000596842 C10orf55Q5SWW7 151 aa12.5□□□□□ -0.41
UPF1-204ENST00000596842 CSTL1Q9H114 145 aa12.5□□□□□ -0.41
UPF1-204ENST00000596842 SLC45A2Q9UMX9 530 aa12.5□□□□□ -0.41
UPF1-204ENST00000596842 DYSFO75923 2080 aa12.5□□□□□ -0.41
UPF1-204ENST00000596842 GPR6P46095 362 aaPredicted RBP12.5□□□□□ -0.41
UPF1-204ENST00000596842 GUCD1Q96NT3 240 aa12.5□□□□□ -0.41
UPF1-204ENST00000596842 ZNF355PQ9NSJ1 428 aa12.5□□□□□ -0.41
UPF1-204ENST00000596842 IGKV1OR2-108A0A075B7D4 117 aa12.49□□□□□ -0.41
UPF1-204ENST00000596842 SPAARA0A1B0GVQ0 90 aa12.49□□□□□ -0.41
UPF1-204ENST00000596842 GAGE12BA1L429 117 aa12.49□□□□□ -0.41
UPF1-204ENST00000596842 LINC00310P59036 64 aa12.49□□□□□ -0.41
UPF1-204ENST00000596842 NHLH1Q02575 133 aa12.49□□□□□ -0.41
UPF1-204ENST00000596842 TRAT1Q6PIZ9 186 aa12.49□□□□□ -0.41
UPF1-204ENST00000596842 COMMD5Q9GZQ3 224 aa12.49□□□□□ -0.41
UPF1-204ENST00000596842 NRN1Q9NPD7 142 aa12.49□□□□□ -0.41
UPF1-204ENST00000596842 SRRM4A7MD48 611 aaKnown RBP12.49□□□□□ -0.41
UPF1-204ENST00000596842 LGALS4P56470 323 aa12.49□□□□□ -0.41
UPF1-204ENST00000596842 MPV17L2Q567V2 206 aa12.49□□□□□ -0.41
UPF1-204ENST00000596842 SSBP4Q9BWG4 385 aaPredicted RBP12.49□□□□□ -0.41
UPF1-204ENST00000596842 MORN5Q5VZ52 161 aa12.49□□□□□ -0.41
UPF1-204ENST00000596842 ZNF331Q9NQX6 463 aaPredicted RBP12.49□□□□□ -0.41
UPF1-204ENST00000596842 TNFAIP6P98066 277 aaPredicted RBP12.48□□□□□ -0.41
UPF1-204ENST00000596842 OR1N2Q8NGR9 330 aa12.48□□□□□ -0.41
UPF1-204ENST00000596842 IGHV3-72A0A0B4J1Y9 119 aa12.48□□□□□ -0.41
UPF1-204ENST00000596842 GGTLC3B5MD39 225 aa12.48□□□□□ -0.41
UPF1-204ENST00000596842 PAFAH1B2P68402 229 aa12.48□□□□□ -0.41
UPF1-204ENST00000596842 FAM90A1Q86YD7 464 aa12.48□□□□□ -0.41
UPF1-204ENST00000596842 FAM168AQ92567 244 aa12.48□□□□□ -0.41
UPF1-204ENST00000596842 HARBI1Q96MB7 349 aa12.48□□□□□ -0.41
UPF1-204ENST00000596842 LSM4Q9Y4Z0 139 aaKnown RBP12.48□□□□□ -0.41
UPF1-204ENST00000596842 V9GYV3 84 aa12.48□□□□□ -0.41
UPF1-204ENST00000596842 ENSAO43768 121 aaKnown RBP12.48□□□□□ -0.41
UPF1-204ENST00000596842 MFAP2P55001 183 aa12.48□□□□□ -0.41
UPF1-204ENST00000596842 YPEL3P61236 119 aaPredicted RBP12.48□□□□□ -0.41
UPF1-204ENST00000596842 PMCHL2Q9BQD1 86 aa12.48□□□□□ -0.41
UPF1-204ENST00000596842 CCL3L1P16619 93 aa12.47□□□□□ -0.41
UPF1-204ENST00000596842 WT1P19544 449 aaPredicted RBP12.47□□□□□ -0.41
UPF1-204ENST00000596842 ORM2P19652 201 aa12.47□□□□□ -0.41
UPF1-204ENST00000596842 SELENOVP59797 346 aa12.47□□□□□ -0.41
UPF1-204ENST00000596842 MZT1Q08AG7 82 aa12.47□□□□□ -0.41
UPF1-204ENST00000596842 ORAOV1Q8WV07 137 aa12.47□□□□□ -0.41
UPF1-204ENST00000596842 NCOR1P1Q9H4R4 102 aa12.47□□□□□ -0.41
UPF1-204ENST00000596842 AKAP6Q13023 2319 aa12.47□□□□□ -0.41
UPF1-204ENST00000596842 PRSS46E5RG02 174 aa12.47□□□□□ -0.41
UPF1-204ENST00000596842 M0R2Z0 102 aa12.47□□□□□ -0.41
UPF1-204ENST00000596842 SP9P0CG40 484 aa12.47□□□□□ -0.41
UPF1-204ENST00000596842 SCGB2A2Q13296 93 aa12.47□□□□□ -0.41
UPF1-204ENST00000596842 RTL8BQ17RB0 113 aa12.47□□□□□ -0.41
UPF1-204ENST00000596842 C17orf58Q2M2W7 97 aa12.47□□□□□ -0.41
UPF1-204ENST00000596842 KBTBD11-OT1A0A1B0GTJ5 212 aa12.47□□□□□ -0.41
UPF1-204ENST00000596842 PRR33A8MZF0 331 aa12.47□□□□□ -0.41
UPF1-204ENST00000596842 PPIAL4DF5H284 164 aa12.47□□□□□ -0.41
UPF1-204ENST00000596842 SSBP2P81877 361 aaPredicted RBP12.47□□□□□ -0.41
UPF1-204ENST00000596842 TRIP6Q15654 476 aaKnown RBP12.47□□□□□ -0.41
UPF1-204ENST00000596842 OTOGLQ3ZCN5 2332 aa12.47□□□□□ -0.41
UPF1-204ENST00000596842 DEFB124Q8NES8 71 aa12.47□□□□□ -0.41
UPF1-204ENST00000596842 TMEM167BQ9NRX6 74 aa12.47□□□□□ -0.41
UPF1-204ENST00000596842 HYPMO75409 117 aa12.46□□□□□ -0.41
UPF1-204ENST00000596842 LINC00869P0C866 280 aa12.46□□□□□ -0.41
UPF1-204ENST00000596842 CD24P25063 80 aa12.46□□□□□ -0.41
UPF1-204ENST00000596842 GNG5P63218 68 aa12.46□□□□□ -0.41
UPF1-204ENST00000596842 MCRIP2Q9BUT9 160 aaKnown RBP12.46□□□□□ -0.41
UPF1-204ENST00000596842 ZNF71Q9NQZ8 489 aaPredicted RBP12.46□□□□□ -0.41
UPF1-204ENST00000596842 COX7A2P2O60397 106 aa12.46□□□□□ -0.41
UPF1-204ENST00000596842 SAA1P0DJI8 122 aaPredicted RBP12.46□□□□□ -0.41
UPF1-204ENST00000596842 PAX1P15863 534 aa12.46□□□□□ -0.41
UPF1-204ENST00000596842 TXNDC17Q9BRA2 123 aa12.46□□□□□ -0.41
UPF1-204ENST00000596842 KIR2DL5BA0A0G2JN68 375 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms