RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 C2orf83Q53S99 150 aa12.18□□□□□ -0.46
TRIM28-206ENST00000595974 RBPMS2Q6ZRY4 209 aaKnown RBP12.18□□□□□ -0.46
TRIM28-206ENST00000595974 LYZL2Q7Z4W2 148 aa12.18□□□□□ -0.46
TRIM28-206ENST00000595974 CENPSQ8N2Z9 138 aa12.18□□□□□ -0.46
TRIM28-206ENST00000595974 SLC24A4Q8NFF2 622 aa12.18□□□□□ -0.46
TRIM28-206ENST00000595974 ZNF414Q96IQ9 312 aa12.18□□□□□ -0.46
TRIM28-206ENST00000595974 OR10C1Q96KK4 312 aa12.18□□□□□ -0.46
TRIM28-206ENST00000595974 A0A1B0GU03 582 aa12.17□□□□□ -0.46
TRIM28-206ENST00000595974 RPS10-NUDT3A0A1W2PQS6 291 aa12.17□□□□□ -0.46
TRIM28-206ENST00000595974 SCGB2A1O75556 95 aa12.17□□□□□ -0.46
TRIM28-206ENST00000595974 SCAF4O95104 1147 aaKnown RBP12.17□□□□□ -0.46
TRIM28-206ENST00000595974 UBE2MP61081 183 aaKnown RBP12.17□□□□□ -0.46
TRIM28-206ENST00000595974 TNFRSF9Q07011 255 aa12.17□□□□□ -0.46
TRIM28-206ENST00000595974 LRTM2Q8N967 370 aa12.17□□□□□ -0.46
TRIM28-206ENST00000595974 RCHY1Q96PM5 261 aa12.17□□□□□ -0.46
TRIM28-206ENST00000595974 SDHCQ99643 169 aaPredicted RBP12.17□□□□□ -0.46
TRIM28-206ENST00000595974 SPAG8Q99932 426 aaPredicted RBP12.17□□□□□ -0.46
TRIM28-206ENST00000595974 TM2D3Q9BRN9 247 aa12.17□□□□□ -0.46
TRIM28-206ENST00000595974 HIPK2Q9H2X6 1198 aa12.17□□□□□ -0.46
TRIM28-206ENST00000595974 FNDC4Q9H6D8 234 aaPredicted RBP12.17□□□□□ -0.46
TRIM28-206ENST00000595974 HSPB7Q9UBY9 170 aa12.17□□□□□ -0.46
TRIM28-206ENST00000595974 SELENOKQ9Y6D0 94 aa12.17□□□□□ -0.46
TRIM28-206ENST00000595974 TENM3Q9P273 2699 aa12.17□□□□□ -0.46
TRIM28-206ENST00000595974 IGHV3OR16-8A0A075B7F1 116 aa12.16□□□□□ -0.46
TRIM28-206ENST00000595974 TSPAN4O14817 238 aa12.16□□□□□ -0.46
TRIM28-206ENST00000595974 ZNF207O43670 478 aaKnown RBP12.16□□□□□ -0.46
TRIM28-206ENST00000595974 YIF1AO95070 293 aa12.16□□□□□ -0.46
TRIM28-206ENST00000595974 NDUFB6O95139 128 aa12.16□□□□□ -0.46
TRIM28-206ENST00000595974 NXPH3O95157 252 aa12.16□□□□□ -0.46
TRIM28-206ENST00000595974 SFT2D2O95562 160 aa12.16□□□□□ -0.46
TRIM28-206ENST00000595974 NPY1RP25929 384 aa12.16□□□□□ -0.46
TRIM28-206ENST00000595974 LAMTOR1Q6IAA8 161 aa12.16□□□□□ -0.46
TRIM28-206ENST00000595974 ZNF600Q6ZNG1 722 aa12.16□□□□□ -0.46
TRIM28-206ENST00000595974 NOXA1Q86UR1 476 aa12.16□□□□□ -0.46
TRIM28-206ENST00000595974 OR52B4Q8NGK2 314 aa12.16□□□□□ -0.46
TRIM28-206ENST00000595974 OR4X1Q8NH49 305 aa12.16□□□□□ -0.46
TRIM28-206ENST00000595974 RNASEH2CQ8TDP1 164 aaKnown RBP12.16□□□□□ -0.46
TRIM28-206ENST00000595974 C7orf50Q9BRJ6 194 aaKnown RBP12.16□□□□□ -0.46
TRIM28-206ENST00000595974 GINS3Q9BRX5 216 aa12.16□□□□□ -0.46
TRIM28-206ENST00000595974 IGHV7-4-1A0A0J9YVY3 117 aa12.15□□□□□ -0.46
TRIM28-206ENST00000595974 CENPXA8MT69 81 aa12.15□□□□□ -0.46
TRIM28-206ENST00000595974 OR11H12B2RN74 326 aa12.15□□□□□ -0.46
TRIM28-206ENST00000595974 CLN5O75503 358 aa12.15□□□□□ -0.46
TRIM28-206ENST00000595974 TMEM50AO95807 157 aa12.15□□□□□ -0.46
TRIM28-206ENST00000595974 IL7P13232 177 aa12.15□□□□□ -0.46
TRIM28-206ENST00000595974 PPP1R1AQ13522 171 aa12.15□□□□□ -0.46
TRIM28-206ENST00000595974 DEFB125Q8N687 156 aa12.15□□□□□ -0.46
TRIM28-206ENST00000595974 OR1S1Q8NH92 325 aa12.15□□□□□ -0.46
TRIM28-206ENST00000595974 DTD1Q8TEA8 209 aa12.15□□□□□ -0.46
TRIM28-206ENST00000595974 WFDC10AQ9H1F0 79 aa12.15□□□□□ -0.46
TRIM28-206ENST00000595974 SRD5A3Q9H8P0 318 aa12.15□□□□□ -0.46
TRIM28-206ENST00000595974 SMPXQ9UHP9 88 aa12.15□□□□□ -0.46
TRIM28-206ENST00000595974 SLC25A4P12235 298 aa12.14□□□□□ -0.47
TRIM28-206ENST00000595974 SLC25A6P12236 298 aa12.14□□□□□ -0.47
TRIM28-206ENST00000595974 BMI1P35226 326 aa12.14□□□□□ -0.47
TRIM28-206ENST00000595974 HAGHQ16775 308 aa12.14□□□□□ -0.47
TRIM28-206ENST00000595974 TMEM116Q8NCL8 245 aa12.14□□□□□ -0.47
TRIM28-206ENST00000595974 SPATA25Q9BR10 227 aa12.14□□□□□ -0.47
TRIM28-206ENST00000595974 MRPL36Q9P0J6 103 aaKnown RBP12.14□□□□□ -0.47
TRIM28-206ENST00000595974 TMED3Q9Y3Q3 217 aa12.14□□□□□ -0.47
TRIM28-206ENST00000595974 U3KQ87 197 aa12.14□□□□□ -0.47
TRIM28-206ENST00000595974 TRAV30A0A087WSZ9 112 aa12.13□□□□□ -0.47
TRIM28-206ENST00000595974 TRAV14DV4A0A0A6YYC5 116 aa12.13□□□□□ -0.47
TRIM28-206ENST00000595974 ETFRF1Q6IPR1 90 aa12.13□□□□□ -0.47
TRIM28-206ENST00000595974 TOMM20LQ6UXN7 152 aa12.13□□□□□ -0.47
TRIM28-206ENST00000595974 LINC00322Q6ZN03 302 aaPredicted RBP12.13□□□□□ -0.47
TRIM28-206ENST00000595974 TMEM170AQ8WVE7 144 aa12.13□□□□□ -0.47
TRIM28-206ENST00000595974 RHPN1-AS1Q9BWJ2 59 aa12.13□□□□□ -0.47
TRIM28-206ENST00000595974 RBKSQ9H477 322 aa12.13□□□□□ -0.47
TRIM28-206ENST00000595974 ZFAND3Q9H8U3 227 aa12.13□□□□□ -0.47
TRIM28-206ENST00000595974 PUS1Q9Y606 427 aaKnown RBP eCLIP12.13□□□□□ -0.47
TRIM28-206ENST00000595974 LINC00854A0A1B0GVQ3 168 aa12.12□□□□□ -0.47
TRIM28-206ENST00000595974 OR4C46A6NHA9 309 aa12.12□□□□□ -0.47
TRIM28-206ENST00000595974 FAM90A26D6RGX4 464 aa12.12□□□□□ -0.47
TRIM28-206ENST00000595974 CHEK1O14757 476 aa12.12□□□□□ -0.47
TRIM28-206ENST00000595974 PITX3O75364 302 aa12.12□□□□□ -0.47
TRIM28-206ENST00000595974 IFNA10P01566 189 aa12.12□□□□□ -0.47
TRIM28-206ENST00000595974 BTCP35070 178 aa12.12□□□□□ -0.47
TRIM28-206ENST00000595974 ATP5IP56385 69 aaPredicted RBP12.12□□□□□ -0.47
TRIM28-206ENST00000595974 MLANAQ16655 118 aa12.12□□□□□ -0.47
TRIM28-206ENST00000595974 LINC00299Q6ZSB3 139 aa12.12□□□□□ -0.47
TRIM28-206ENST00000595974 IGKV1-17P01599 117 aa12.11□□□□□ -0.47
TRIM28-206ENST00000595974 CD5P06127 495 aa12.11□□□□□ -0.47
TRIM28-206ENST00000595974 RND2P52198 227 aa12.11□□□□□ -0.47
TRIM28-206ENST00000595974 CNPY1Q3B7I2 92 aa12.11□□□□□ -0.47
TRIM28-206ENST00000595974 PRSS54Q6PEW0 395 aa12.11□□□□□ -0.47
TRIM28-206ENST00000595974 OR1S2Q8NGQ3 325 aa12.11□□□□□ -0.47
TRIM28-206ENST00000595974 RNF2Q99496 336 aa12.11□□□□□ -0.47
TRIM28-206ENST00000595974 IGHV3-49A0A0A0MS15 119 aa12.1□□□□□ -0.47
TRIM28-206ENST00000595974 C9orf170A2RU37 121 aa12.1□□□□□ -0.47
TRIM28-206ENST00000595974 RBMY1BA6NDE4 496 aaKnown RBP12.1□□□□□ -0.47
TRIM28-206ENST00000595974 RBMY1EA6NEQ0 496 aaKnown RBP12.1□□□□□ -0.47
TRIM28-206ENST00000595974 MED6O75586 246 aa12.1□□□□□ -0.47
TRIM28-206ENST00000595974 RBMY1DP0C7P1 496 aaKnown RBP12.1□□□□□ -0.47
TRIM28-206ENST00000595974 IGLC1P0CG04 106 aa12.1□□□□□ -0.47
TRIM28-206ENST00000595974 FAM110AQ9BQ89 295 aa12.1□□□□□ -0.47
TRIM28-206ENST00000595974 TMEM231Q9H6L2 316 aa12.1□□□□□ -0.47
TRIM28-206ENST00000595974 FLVCR2Q9UPI3 526 aa12.1□□□□□ -0.47
TRIM28-206ENST00000595974 HOXB5P09067 269 aa12.09□□□□□ -0.47
TRIM28-206ENST00000595974 OR4E1P0C645 316 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms