RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 SULT1A3P0DMM9 295 aa11.32□□□□□ -0.6
TRIM28-205ENST00000595028 SULT1A4P0DMN0 295 aa11.32□□□□□ -0.6
TRIM28-205ENST00000595028 ANXA3P12429 323 aa11.32□□□□□ -0.6
TRIM28-205ENST00000595028 NPBWR1P48145 328 aa11.32□□□□□ -0.6
TRIM28-205ENST00000595028 NMSQ5H8A3 153 aa11.32□□□□□ -0.6
TRIM28-205ENST00000595028 RBPMS2Q6ZRY4 209 aaKnown RBP11.32□□□□□ -0.6
TRIM28-205ENST00000595028 TMED4Q7Z7H5 227 aa11.32□□□□□ -0.6
TRIM28-205ENST00000595028 DEFB125Q8N687 156 aa11.32□□□□□ -0.6
TRIM28-205ENST00000595028 DUSP18Q8NEJ0 188 aa11.32□□□□□ -0.6
TRIM28-205ENST00000595028 OR52B4Q8NGK2 314 aa11.32□□□□□ -0.6
TRIM28-205ENST00000595028 SPATA25Q9BR10 227 aa11.32□□□□□ -0.6
TRIM28-205ENST00000595028 SRD5A3Q9H8P0 318 aa11.32□□□□□ -0.6
TRIM28-205ENST00000595028 SHPKQ9UHJ6 478 aa11.32□□□□□ -0.6
TRIM28-205ENST00000595028 OR11H12B2RN74 326 aa11.31□□□□□ -0.6
TRIM28-205ENST00000595028 ZNF207O43670 478 aaKnown RBP11.31□□□□□ -0.6
TRIM28-205ENST00000595028 OPRK1P41145 380 aa11.31□□□□□ -0.6
TRIM28-205ENST00000595028 HTR2BP41595 481 aa11.31□□□□□ -0.6
TRIM28-205ENST00000595028 ANKRD55Q3KP44 614 aa11.31□□□□□ -0.6
TRIM28-205ENST00000595028 LINC00322Q6ZN03 302 aaPredicted RBP11.31□□□□□ -0.6
TRIM28-205ENST00000595028 MUC7Q8TAX7 377 aa11.31□□□□□ -0.6
TRIM28-205ENST00000595028 OR10C1Q96KK4 312 aa11.31□□□□□ -0.6
TRIM28-205ENST00000595028 SPAG8Q99932 426 aaPredicted RBP11.31□□□□□ -0.6
TRIM28-205ENST00000595028 SLC25A21Q9BQT8 299 aaPredicted RBP11.31□□□□□ -0.6
TRIM28-205ENST00000595028 FNDC4Q9H6D8 234 aaPredicted RBP11.31□□□□□ -0.6
TRIM28-205ENST00000595028 PCLOQ9Y6V0 5065 aa11.31□□□□□ -0.6
TRIM28-205ENST00000595028 IGHV7-4-1A0A0J9YVY3 117 aa11.3□□□□□ -0.6
TRIM28-205ENST00000595028 CEBPZOSA8MTT3 80 aa11.3□□□□□ -0.6
TRIM28-205ENST00000595028 TSPAN4O14817 238 aa11.3□□□□□ -0.6
TRIM28-205ENST00000595028 YIF1AO95070 293 aa11.3□□□□□ -0.6
TRIM28-205ENST00000595028 CCR6P51684 374 aa11.3□□□□□ -0.6
TRIM28-205ENST00000595028 TMEM128Q5BJH2 165 aa11.3□□□□□ -0.6
TRIM28-205ENST00000595028 LYZL2Q7Z4W2 148 aa11.3□□□□□ -0.6
TRIM28-205ENST00000595028 LGI3Q8N145 548 aa11.3□□□□□ -0.6
TRIM28-205ENST00000595028 SLC24A4Q8NFF2 622 aa11.3□□□□□ -0.6
TRIM28-205ENST00000595028 HEYLQ9NQ87 328 aaPredicted RBP11.3□□□□□ -0.6
TRIM28-205ENST00000595028 MRPL36Q9P0J6 103 aaKnown RBP11.3□□□□□ -0.6
TRIM28-205ENST00000595028 CACFD1Q9UGQ2 172 aa11.3□□□□□ -0.6
TRIM28-205ENST00000595028 PIGBOS1A0A0B4J2F0 54 aa11.29□□□□□ -0.6
TRIM28-205ENST00000595028 NXPH3O95157 252 aa11.29□□□□□ -0.6
TRIM28-205ENST00000595028 SMCO1Q147U7 214 aa11.29□□□□□ -0.6
TRIM28-205ENST00000595028 C2orf83Q53S99 150 aa11.29□□□□□ -0.6
TRIM28-205ENST00000595028 TRIQKQ629K1 86 aa11.29□□□□□ -0.6
TRIM28-205ENST00000595028 LAMTOR1Q6IAA8 161 aa11.29□□□□□ -0.6
TRIM28-205ENST00000595028 ZNF600Q6ZNG1 722 aa11.29□□□□□ -0.6
TRIM28-205ENST00000595028 GINS3Q9BRX5 216 aa11.29□□□□□ -0.6
TRIM28-205ENST00000595028 ZFAND3Q9H8U3 227 aa11.29□□□□□ -0.6
TRIM28-205ENST00000595028 HSPB7Q9UBY9 170 aa11.29□□□□□ -0.6
TRIM28-205ENST00000595028 SMPXQ9UHP9 88 aa11.29□□□□□ -0.6
TRIM28-205ENST00000595028 DUXBA0A1W2PPF3 345 aa11.28□□□□□ -0.6
TRIM28-205ENST00000595028 RPS10-NUDT3A0A1W2PQS6 291 aa11.28□□□□□ -0.6
TRIM28-205ENST00000595028 RBMY1BA6NDE4 496 aaKnown RBP11.28□□□□□ -0.6
TRIM28-205ENST00000595028 RBMY1EA6NEQ0 496 aaKnown RBP11.28□□□□□ -0.6
TRIM28-205ENST00000595028 CLN5O75503 358 aa11.28□□□□□ -0.6
TRIM28-205ENST00000595028 TMEM50AO95807 157 aa11.28□□□□□ -0.6
TRIM28-205ENST00000595028 RBMY1DP0C7P1 496 aaKnown RBP11.28□□□□□ -0.6
TRIM28-205ENST00000595028 VAMP1P23763 118 aa11.28□□□□□ -0.6
TRIM28-205ENST00000595028 TNFRSF9Q07011 255 aa11.28□□□□□ -0.6
TRIM28-205ENST00000595028 RBMS2Q15434 407 aaKnown RBP11.28□□□□□ -0.6
TRIM28-205ENST00000595028 BAK1Q16611 211 aa11.28□□□□□ -0.6
TRIM28-205ENST00000595028 TOMM20LQ6UXN7 152 aa11.28□□□□□ -0.6
TRIM28-205ENST00000595028 TMEM116Q8NCL8 245 aa11.28□□□□□ -0.6
TRIM28-205ENST00000595028 OR4X1Q8NH49 305 aa11.28□□□□□ -0.6
TRIM28-205ENST00000595028 TMEM170AQ8WVE7 144 aa11.28□□□□□ -0.6
TRIM28-205ENST00000595028 RHPN1-AS1Q9BWJ2 59 aa11.28□□□□□ -0.6
TRIM28-205ENST00000595028 NDUFA13Q9P0J0 144 aa11.28□□□□□ -0.6
TRIM28-205ENST00000595028 HERC2O95714 4834 aa11.27□□□□□ -0.6
TRIM28-205ENST00000595028 CHEK1O14757 476 aa11.27□□□□□ -0.61
TRIM28-205ENST00000595028 SCGB2A1O75556 95 aa11.27□□□□□ -0.61
TRIM28-205ENST00000595028 NPY1RP25929 384 aa11.27□□□□□ -0.61
TRIM28-205ENST00000595028 INPP1P49441 399 aa11.27□□□□□ -0.61
TRIM28-205ENST00000595028 PPP1R1AQ13522 171 aa11.27□□□□□ -0.61
TRIM28-205ENST00000595028 CENPSQ8N2Z9 138 aa11.27□□□□□ -0.61
TRIM28-205ENST00000595028 LRTM2Q8N967 370 aa11.27□□□□□ -0.61
TRIM28-205ENST00000595028 RNASEH2CQ8TDP1 164 aaKnown RBP11.27□□□□□ -0.61
TRIM28-205ENST00000595028 CITED4Q96RK1 184 aa11.27□□□□□ -0.61
TRIM28-205ENST00000595028 RNF2Q99496 336 aa11.27□□□□□ -0.61
TRIM28-205ENST00000595028 SDHCQ99643 169 aaPredicted RBP11.27□□□□□ -0.61
TRIM28-205ENST00000595028 HIPK2Q9H2X6 1198 aa11.27□□□□□ -0.61
TRIM28-205ENST00000595028 PUS1Q9Y606 427 aaKnown RBP eCLIP11.27□□□□□ -0.61
TRIM28-205ENST00000595028 IGHV3-49A0A0A0MS15 119 aa11.26□□□□□ -0.61
TRIM28-205ENST00000595028 TRAV14DV4A0A0A6YYC5 116 aa11.26□□□□□ -0.61
TRIM28-205ENST00000595028 A0A1B0GU03 582 aa11.26□□□□□ -0.61
TRIM28-205ENST00000595028 NAP1L6A6NFF2 107 aa11.26□□□□□ -0.61
TRIM28-205ENST00000595028 OR4C46A6NHA9 309 aa11.26□□□□□ -0.61
TRIM28-205ENST00000595028 SFT2D2O95562 160 aa11.26□□□□□ -0.61
TRIM28-205ENST00000595028 MLANAQ16655 118 aa11.26□□□□□ -0.61
TRIM28-205ENST00000595028 ODF3L2Q3SX64 289 aa11.26□□□□□ -0.61
TRIM28-205ENST00000595028 OR1S1Q8NH92 325 aa11.26□□□□□ -0.61
TRIM28-205ENST00000595028 DTD1Q8TEA8 209 aa11.26□□□□□ -0.61
TRIM28-205ENST00000595028 RBKSQ9H477 322 aa11.26□□□□□ -0.61
TRIM28-205ENST00000595028 RETNQ9HD89 108 aa11.26□□□□□ -0.61
TRIM28-205ENST00000595028 IGHV3OR16-13A0A075B7E8 117 aa11.25□□□□□ -0.61
TRIM28-205ENST00000595028 IGHV3-74A0A0B4J1X5 117 aa11.25□□□□□ -0.61
TRIM28-205ENST00000595028 IGKV1-17P01599 117 aa11.25□□□□□ -0.61
TRIM28-205ENST00000595028 SLC25A4P12235 298 aa11.25□□□□□ -0.61
TRIM28-205ENST00000595028 BMI1P35226 326 aa11.25□□□□□ -0.61
TRIM28-205ENST00000595028 RND2P52198 227 aa11.25□□□□□ -0.61
TRIM28-205ENST00000595028 UBE2MP61081 183 aaKnown RBP11.25□□□□□ -0.61
TRIM28-205ENST00000595028 PRSS54Q6PEW0 395 aa11.25□□□□□ -0.61
TRIM28-205ENST00000595028 NOXA1Q86UR1 476 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms