RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 SLC25A48Q6ZT89 311 aaKnown RBP8.09□□□□□ -1.11
LIG3-216ENST00000593099 DUX5Q96PT3 197 aa8.09□□□□□ -1.11
LIG3-216ENST00000593099 RNF5Q99942 180 aa8.09□□□□□ -1.11
LIG3-216ENST00000593099 MMP26Q9NRE1 261 aa8.09□□□□□ -1.11
LIG3-216ENST00000593099 A0A1B0GWJ7 208 aa8.09□□□□□ -1.11
LIG3-216ENST00000593099 PITX3O75364 302 aa8.09□□□□□ -1.11
LIG3-216ENST00000593099 NUTF2P61970 127 aaKnown RBP8.09□□□□□ -1.11
LIG3-216ENST00000593099 SRSF4Q08170 494 aaKnown RBP8.09□□□□□ -1.11
LIG3-216ENST00000593099 BUB1B-PAK6H3BSN5 160 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 QRFPP83859 136 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 LDLRAD3Q86YD5 345 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 C21orf62Q9NYP8 219 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 FREM1Q5H8C1 2179 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 CHEK1O14757 476 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 CD8AP01732 235 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 HKR1P10072 659 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 NPPCP23582 126 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 HERPUD1Q15011 391 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 TMEM219Q86XT9 240 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 C8orf46Q8TAG6 207 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 NPIPB3Q92617 1050 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 PXMP4Q9Y6I8 212 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 HIVEP2P31629 2446 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 B4DEV8 164 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 E9PQ18 207 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 CDX1P47902 265 aaPredicted RBP8.08□□□□□ -1.12
LIG3-216ENST00000593099 RAB9AP51151 201 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 ERVK11-1P61568 191 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 SCGB1D4Q6XE38 83 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 RTBDNQ9BSG5 229 aaPredicted RBP8.08□□□□□ -1.12
LIG3-216ENST00000593099 IGHV1-69DA0A0B4J2H0 117 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 A0A1W2PRX2 142 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 IGHV1-69P01742 117 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 HIST1H1EP10412 219 aaKnown RBP8.08□□□□□ -1.12
LIG3-216ENST00000593099 LOXP28300 417 aaPredicted RBP8.08□□□□□ -1.12
LIG3-216ENST00000593099 KAAG1Q9UBP8 84 aa8.08□□□□□ -1.12
LIG3-216ENST00000593099 ZNF737O75373 536 aa8.07□□□□□ -1.12
LIG3-216ENST00000593099 CTAG1AP78358 180 aa8.07□□□□□ -1.12
LIG3-216ENST00000593099 ZNF429Q86V71 674 aa8.07□□□□□ -1.12
LIG3-216ENST00000593099 IGHV3-35A0A0C4DH35 117 aa8.07□□□□□ -1.12
LIG3-216ENST00000593099 DIRC3C9JPN6 131 aa8.07□□□□□ -1.12
LIG3-216ENST00000593099 IGLV3-1P01715 115 aa8.07□□□□□ -1.12
LIG3-216ENST00000593099 IGHV4-39P01824 125 aa8.07□□□□□ -1.12
LIG3-216ENST00000593099 GUSBP1Q15486 140 aa8.07□□□□□ -1.12
LIG3-216ENST00000593099 KHDC3LQ587J8 217 aa8.07□□□□□ -1.12
LIG3-216ENST00000593099 RNASEKQ6P5S7 137 aaKnown RBP8.07□□□□□ -1.12
LIG3-216ENST00000593099 WNT10AQ9GZT5 417 aa8.07□□□□□ -1.12
LIG3-216ENST00000593099 OR5AC2Q9NZP5 309 aa8.07□□□□□ -1.12
LIG3-216ENST00000593099 DOPEY2Q9Y3R5 2298 aa8.07□□□□□ -1.12
LIG3-216ENST00000593099 TCRBV4S1A1TA0A5B7 111 aa8.07□□□□□ -1.12
LIG3-216ENST00000593099 CA1P00915 261 aaPredicted RBP8.07□□□□□ -1.12
LIG3-216ENST00000593099 IGHV3-11P01762 117 aa8.07□□□□□ -1.12
LIG3-216ENST00000593099 FBLN7Q53RD9 439 aa8.07□□□□□ -1.12
LIG3-216ENST00000593099 AWAT1Q58HT5 328 aa8.07□□□□□ -1.12
LIG3-216ENST00000593099 EBLN2Q6P2I7 272 aa8.07□□□□□ -1.12
LIG3-216ENST00000593099 DTX2Q86UW9 622 aa8.07□□□□□ -1.12
LIG3-216ENST00000593099 EAF1Q96JC9 268 aaPredicted RBP8.07□□□□□ -1.12
LIG3-216ENST00000593099 ST6GAL2Q96JF0 529 aa8.07□□□□□ -1.12
LIG3-216ENST00000593099 IGHV3-48P01763 117 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 ATP6V0CP27449 155 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 FCGR2BP31994 310 aaPredicted RBP8.06□□□□□ -1.12
LIG3-216ENST00000593099 SERF2P84101 59 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 NRGNQ92686 78 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 SEC11CQ9BY50 192 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 TNFSF18Q9UNG2 199 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 TMEM56-RWDD3S4R434 201 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 TP53BP1Q12888 1972 aaPredicted RBP8.06□□□□□ -1.12
LIG3-216ENST00000593099 C7orf77A4D0Y5 90 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 IFITM10A6NMD0 228 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 OR9G9P0C7N8 305 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 TMEM177Q53S58 311 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 C16orf92Q96LL3 132 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 JKAMPQ9P055 326 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 CHTOPQ9Y3Y2 248 aaKnown RBP8.06□□□□□ -1.12
LIG3-216ENST00000593099 CTXND1A0A1B0GTU2 59 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 IGHV2-5P01817 119 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 BEND2Q8NDZ0 799 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 SDHCQ99643 169 aaPredicted RBP8.06□□□□□ -1.12
LIG3-216ENST00000593099 PAXXQ9BUH6 204 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 IFI27L2Q9H2X8 130 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 LRP4O75096 1905 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 FAM74A7A6NL05 159 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 IGHV2-70P01814 119 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 OR5AL1P0C617 328 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 CRISP2P16562 243 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 GPR183P32249 361 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 FGF8P55075 233 aaPredicted RBP8.06□□□□□ -1.12
LIG3-216ENST00000593099 FAM74A3Q4VXF1 159 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 ZFAND6Q6FIF0 208 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 Q6ZS49 121 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 Q71RC1 249 aaPredicted RBP8.06□□□□□ -1.12
LIG3-216ENST00000593099 SOSTQ9BQB4 213 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 GTSF1LQ9H1H1 148 aa8.06□□□□□ -1.12
LIG3-216ENST00000593099 GEMIN7Q9H840 131 aaKnown RBP8.06□□□□□ -1.12
LIG3-216ENST00000593099 TRAV41A0A0B4J266 112 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 PSMB11A5LHX3 300 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 ERVFC1-1P60608 527 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 FAM71F2Q6NXP2 309 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 C11orf44Q8N8P7 122 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 SVIPQ8NHG7 77 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms