RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 UBE2V1Q13404 147 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 PMCHL1Q16048 86 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 BATFQ16520 125 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 RSPO1Q2MKA7 263 aaPredicted RBP3.39□□□□□ -1.87
LIG3-211ENST00000588713 RPEL1Q2QD12 228 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 KRTAP19-4Q3LI73 84 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 AARDQ4LEZ3 155 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 FFAR4Q5NUL3 377 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 CST9LP1Q5W188 147 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 OR8G2PQ6IF36 304 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 PET117Q6UWS5 81 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 C19orf35Q6ZS72 473 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 MYPOPQ86VE0 399 aaPredicted RBP3.39□□□□□ -1.87
LIG3-211ENST00000588713 ZNF709Q8N972 641 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 ZBTB34Q8NCN2 500 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 CPEB3Q8NE35 698 aaKnown RBP3.39□□□□□ -1.87
LIG3-211ENST00000588713 OR4P4Q8NGL7 312 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 OR10G8Q8NGN5 311 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 OR1L6Q8NGR2 347 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 OR2AE1Q8NHA4 323 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 RNASE8Q8TDE3 154 aaKnown RBP3.39□□□□□ -1.87
LIG3-211ENST00000588713 VN1R17PQ8TDU5 208 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 TXN2Q99757 166 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 SF3B5Q9BWJ5 86 aaKnown RBP3.39□□□□□ -1.87
LIG3-211ENST00000588713 NPCDR1Q9BY65 106 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 GNB1LQ9BYB4 327 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 PATZ1Q9HBE1 687 aaKnown RBP3.39□□□□□ -1.87
LIG3-211ENST00000588713 SLC35D1Q9NTN3 355 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 TMEM38BQ9NVV0 291 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 MRPL27Q9P0M9 148 aaKnown RBP3.39□□□□□ -1.87
LIG3-211ENST00000588713 FBXL7Q9UJT9 491 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 DNAH3Q8TD57 4116 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 PRR14LQ5THK1 2151 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 IGHV2OR16-5A0A0B4J2B6 119 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 GRIFINA4D1Z8 144 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 OR5B21A6NL26 309 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 GJE1A6NN92 205 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 FAM90A9PA6NNJ1 464 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 PMS2P5A8MQ11 134 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 J3QR06 171 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 CCL25O15444 150 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 ZNF324O75467 553 aaPredicted RBP3.38□□□□□ -1.87
LIG3-211ENST00000588713 TOX4O94842 621 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 CXorf1O96002 111 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 MT-CO2P00403 227 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 NGFP01138 241 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 AMY1AP04745 511 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 SCTP09683 121 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 AREGP15514 252 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 BCL3P20749 454 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 LGALS4P56470 323 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 RHOGP84095 191 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 HLA-DRB5Q30154 266 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 SPANXN5Q5MJ07 72 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 PHYHD1Q5SRE7 291 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 RAET1LQ5VY80 246 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 RASL11AQ6T310 242 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 Q6ZN92 141 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 LRP11Q86VZ4 500 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 BAGE3Q86Y29 109 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 BAGE2Q86Y30 109 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 CALHM1Q8IU99 346 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 MKXQ8IYA7 352 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 ZDHHC23Q8IYP9 409 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 WDR31Q8NA23 367 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 OR10G3Q8NGC4 313 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 OR51H1Q8NH63 302 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 CORO2AQ92828 525 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 APOBEC3DQ96AK3 386 aaPredicted RBP3.38□□□□□ -1.87
LIG3-211ENST00000588713 APH1AQ96BI3 265 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 SPACA9Q96E40 222 aaPredicted RBP3.38□□□□□ -1.87
LIG3-211ENST00000588713 ZNF48Q96MX3 618 aaPredicted RBP3.38□□□□□ -1.87
LIG3-211ENST00000588713 OR2H1Q9GZK4 316 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 PROK2Q9HC23 129 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 BET1LQ9NYM9 111 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 KCNIP1Q9NZI2 227 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 C1RLQ9NZP8 487 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 WDR83OSQ9Y284 106 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 TBL2Q9Y4P3 447 aaKnown RBP3.38□□□□□ -1.87
LIG3-211ENST00000588713 KIAA2026Q5HYC2 2103 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 STARD9Q9P2P6 4700 aa3.38□□□□□ -1.87
LIG3-211ENST00000588713 TRGV10A0A0A0MS01 117 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 ZNF503-AS2A6NEH8 195 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 SNURFLB1AK76 121 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 TRAPPC2LH3BP13 241 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 CDIPTO14735 213 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 RAB29O14966 203 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 RBFOX2O43251 390 aaKnown RBP eCLIP3.37□□□□□ -1.87
LIG3-211ENST00000588713 TNFSF12O43508 249 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 NUPR1O60356 82 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 RAMP3O60896 148 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 SS18L1O75177 396 aaPredicted RBP3.37□□□□□ -1.87
LIG3-211ENST00000588713 NXPH2O95156 264 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 HLA-DRB1P01911 266 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 GPX1P07203 203 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 NHLRC4P0CG21 123 aaPredicted RBP3.37□□□□□ -1.87
LIG3-211ENST00000588713 STAG3L2P0CL84 134 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 STAG3L3P0CL85 134 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 ZNF32P17041 273 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 CBLN1P23435 193 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms