RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 SLIT1O75093 1534 aa4.1□□□□□ -1.75
VMP1-208ENST00000588617 CLTCQ00610 1675 aaKnown RBP4.1□□□□□ -1.75
VMP1-208ENST00000588617 SHANK1Q9Y566 2161 aa4.09□□□□□ -1.75
VMP1-208ENST00000588617 ZNF407Q9C0G0 2248 aa4.09□□□□□ -1.75
VMP1-208ENST00000588617 GNRH2O43555 120 aa4.09□□□□□ -1.75
VMP1-208ENST00000588617 CIAO1O76071 339 aa4.09□□□□□ -1.75
VMP1-208ENST00000588617 IFNA10P01566 189 aa4.09□□□□□ -1.75
VMP1-208ENST00000588617 CTSGP08311 255 aa4.09□□□□□ -1.75
VMP1-208ENST00000588617 UCHL1P09936 223 aa4.09□□□□□ -1.75
VMP1-208ENST00000588617 CCR2P41597 374 aa4.09□□□□□ -1.75
VMP1-208ENST00000588617 RPL18Q07020 188 aaKnown RBP4.09□□□□□ -1.75
VMP1-208ENST00000588617 MOGQ16653 247 aa4.09□□□□□ -1.75
VMP1-208ENST00000588617 H1FXQ92522 213 aaKnown RBP4.09□□□□□ -1.75
VMP1-208ENST00000588617 IMMP2LQ96T52 175 aa4.09□□□□□ -1.75
VMP1-208ENST00000588617 SS18L2Q9UHA2 77 aa4.09□□□□□ -1.75
VMP1-208ENST00000588617 UFC1Q9Y3C8 167 aa4.09□□□□□ -1.75
VMP1-208ENST00000588617 PTPRMP28827 1452 aa4.09□□□□□ -1.75
VMP1-208ENST00000588617 DIP2AQ14689 1571 aa4.09□□□□□ -1.75
VMP1-208ENST00000588617 A0A0J9YW62 118 aa4.08□□□□□ -1.76
VMP1-208ENST00000588617 G3V2T6 193 aa4.08□□□□□ -1.76
VMP1-208ENST00000588617 MED14O60244 1454 aa4.08□□□□□ -1.76
VMP1-208ENST00000588617 RNASE2P10153 161 aaKnown RBP4.08□□□□□ -1.76
VMP1-208ENST00000588617 HIST1H4AP62805 103 aaKnown RBP4.08□□□□□ -1.76
VMP1-208ENST00000588617 ASXL1Q8IXJ9 1541 aa4.08□□□□□ -1.76
VMP1-208ENST00000588617 ANKRD36BQ8N2N9 1353 aa4.08□□□□□ -1.76
VMP1-208ENST00000588617 ZHX1-C8orf76Q96EF9 292 aa4.08□□□□□ -1.76
VMP1-208ENST00000588617 TVP23CQ96ET8 276 aa4.08□□□□□ -1.76
VMP1-208ENST00000588617 OR8D2Q9GZM6 311 aa4.08□□□□□ -1.76
VMP1-208ENST00000588617 BIN3Q9NQY0 253 aa4.08□□□□□ -1.76
VMP1-208ENST00000588617 ALKQ9UM73 1620 aa4.08□□□□□ -1.76
VMP1-208ENST00000588617 USP32Q8NFA0 1604 aa4.07□□□□□ -1.76
VMP1-208ENST00000588617 CPS1P31327 1500 aa4.07□□□□□ -1.76
VMP1-208ENST00000588617 A0A1B0GV72 72 aa4.07□□□□□ -1.76
VMP1-208ENST00000588617 FABP5P3A8MUU1 101 aa4.07□□□□□ -1.76
VMP1-208ENST00000588617 CREBL2O60519 120 aaPredicted RBP4.07□□□□□ -1.76
VMP1-208ENST00000588617 C1QAP02745 245 aa4.07□□□□□ -1.76
VMP1-208ENST00000588617 CCL5P13501 91 aa4.07□□□□□ -1.76
VMP1-208ENST00000588617 TCTAP57738 103 aa4.07□□□□□ -1.76
VMP1-208ENST00000588617 AKAP14Q86UN6 197 aa4.07□□□□□ -1.76
VMP1-208ENST00000588617 LHFPL1Q86WI0 220 aa4.07□□□□□ -1.76
VMP1-208ENST00000588617 OR4C16Q8NGL9 310 aa4.07□□□□□ -1.76
VMP1-208ENST00000588617 KRTAP4-4Q9BYR3 166 aa4.07□□□□□ -1.76
VMP1-208ENST00000588617 TVP23BQ9NYZ1 205 aa4.07□□□□□ -1.76
VMP1-208ENST00000588617 NAT8Q9UHE5 227 aa4.07□□□□□ -1.76
VMP1-208ENST00000588617 TIMM22Q9Y584 194 aa4.07□□□□□ -1.76
VMP1-208ENST00000588617 FAM215AQ9Y5M1 114 aa4.07□□□□□ -1.76
VMP1-208ENST00000588617 TULP4Q9NRJ4 1543 aa4.06□□□□□ -1.76
VMP1-208ENST00000588617 ATP7BP35670 1465 aa4.06□□□□□ -1.76
VMP1-208ENST00000588617 IGLV10-54A0A075B6I4 117 aa4.06□□□□□ -1.76
VMP1-208ENST00000588617 TRGV5A0A0B4J1U4 118 aa4.06□□□□□ -1.76
VMP1-208ENST00000588617 CLDN25C9JDP6 229 aa4.06□□□□□ -1.76
VMP1-208ENST00000588617 H3BT86 120 aa4.06□□□□□ -1.76
VMP1-208ENST00000588617 IGHV3-7P01780 117 aa4.06□□□□□ -1.76
VMP1-208ENST00000588617 C1QBP02746 253 aa4.06□□□□□ -1.76
VMP1-208ENST00000588617 MSNP26038 577 aaKnown RBP4.06□□□□□ -1.76
VMP1-208ENST00000588617 SERPINB1P30740 379 aa4.06□□□□□ -1.76
VMP1-208ENST00000588617 RHOBP62745 196 aa4.06□□□□□ -1.76
VMP1-208ENST00000588617 KRTAP5-4Q6L8H1 288 aa4.06□□□□□ -1.76
VMP1-208ENST00000588617 Q6Q795 121 aa4.06□□□□□ -1.76
VMP1-208ENST00000588617 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.06□□□□□ -1.76
VMP1-208ENST00000588617 MED29Q9NX70 200 aa4.06□□□□□ -1.76
VMP1-208ENST00000588617 UBR1Q8IWV7 1749 aa4.06□□□□□ -1.76
VMP1-208ENST00000588617 ARHGEF28Q8N1W1 1705 aaKnown RBP4.06□□□□□ -1.76
VMP1-208ENST00000588617 MYOM1P52179 1685 aa4.06□□□□□ -1.76
VMP1-208ENST00000588617 ADGRB2O60241 1585 aa4.06□□□□□ -1.76
VMP1-208ENST00000588617 TRPM6Q9BX84 2022 aa4.05□□□□□ -1.76
VMP1-208ENST00000588617 KNDC1Q76NI1 1749 aa4.05□□□□□ -1.76
VMP1-208ENST00000588617 IGKV1-17P01599 117 aa4.05□□□□□ -1.76
VMP1-208ENST00000588617 GZMHP20718 246 aa4.05□□□□□ -1.76
VMP1-208ENST00000588617 ALDH3A1P30838 453 aa4.05□□□□□ -1.76
VMP1-208ENST00000588617 NCALDP61601 193 aa4.05□□□□□ -1.76
VMP1-208ENST00000588617 TSNQ15631 228 aaKnown RBP4.05□□□□□ -1.76
VMP1-208ENST00000588617 Q6ZS52 159 aa4.05□□□□□ -1.76
VMP1-208ENST00000588617 OR51T1Q8NGJ9 327 aa4.05□□□□□ -1.76
VMP1-208ENST00000588617 PRNDQ9UKY0 176 aa4.05□□□□□ -1.76
VMP1-208ENST00000588617 C3P01024 1663 aa4.05□□□□□ -1.76
VMP1-208ENST00000588617 QRICH2Q9H0J4 1663 aa4.05□□□□□ -1.76
VMP1-208ENST00000588617 NRXN3Q9Y4C0 1643 aa4.05□□□□□ -1.76
VMP1-208ENST00000588617 DOCK6Q96HP0 2047 aa4.05□□□□□ -1.76
VMP1-208ENST00000588617 CEP170BQ9Y4F5 1589 aaPredicted RBP4.05□□□□□ -1.76
VMP1-208ENST00000588617 DOCK3Q8IZD9 2030 aa4.04□□□□□ -1.76
VMP1-208ENST00000588617 ZNF142P52746 1687 aaPredicted RBP4.04□□□□□ -1.76
VMP1-208ENST00000588617 SCN10AQ9Y5Y9 1956 aa4.04□□□□□ -1.76
VMP1-208ENST00000588617 IGKV1D-17A0A075B6S4 117 aa4.04□□□□□ -1.76
VMP1-208ENST00000588617 IRGMA1A4Y4 181 aa4.04□□□□□ -1.76
VMP1-208ENST00000588617 SIGLEC16A6NMB1 481 aa4.04□□□□□ -1.76
VMP1-208ENST00000588617 RPL28P46779 137 aaKnown RBP4.04□□□□□ -1.76
VMP1-208ENST00000588617 TPI1P60174 286 aa4.04□□□□□ -1.76
VMP1-208ENST00000588617 GNG5P63218 68 aa4.04□□□□□ -1.76
VMP1-208ENST00000588617 RHEBQ15382 184 aa4.04□□□□□ -1.76
VMP1-208ENST00000588617 AKR1C8PQ5T2L2 129 aa4.04□□□□□ -1.76
VMP1-208ENST00000588617 SLC35E3Q7Z769 313 aa4.04□□□□□ -1.76
VMP1-208ENST00000588617 STX19Q8N4C7 294 aa4.04□□□□□ -1.76
VMP1-208ENST00000588617 LINC00304Q8N9R0 145 aa4.04□□□□□ -1.76
VMP1-208ENST00000588617 ZNF471Q9BX82 626 aaPredicted RBP4.04□□□□□ -1.76
VMP1-208ENST00000588617 BLMP54132 1417 aaPredicted RBP4.04□□□□□ -1.76
VMP1-208ENST00000588617 NSD3Q9BZ95 1437 aa4.04□□□□□ -1.76
VMP1-208ENST00000588617 COL1A2P08123 1366 aa4.03□□□□□ -1.76
VMP1-208ENST00000588617 CDC42BPGQ6DT37 1551 aa4.03□□□□□ -1.76
VMP1-208ENST00000588617 KIF13BQ9NQT8 1826 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms