RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 FAM57AQ8TBR7 257 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 SCGB1C1Q8TD33 95 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 HAVCR2Q8TDQ0 301 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 C2orf15Q8WU43 125 aaKnown RBP1.9□□□□□ -2.11
VPS4B-203ENST00000588323 TWIST2Q8WVJ9 160 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 FXYD5Q96DB9 178 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 RBMXL1Q96E39 390 aaKnown RBP1.9□□□□□ -2.11
VPS4B-203ENST00000588323 REEP6Q96HR9 211 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 C14orf144Q96I85 54 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 CNBD2Q96M20 576 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 RNF157Q96PX1 679 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 KLF6Q99612 283 aaPredicted RBP1.9□□□□□ -2.11
VPS4B-203ENST00000588323 CHCHD7Q9BUK0 85 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 EFCAB11Q9BUY7 163 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 PBDC1Q9BVG4 233 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 MS4A8Q9BY19 250 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 CXCL16Q9H2A7 254 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 TAS2R5Q9NYW4 299 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 CALML5Q9NZT1 146 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 SS18L2Q9UHA2 77 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 BAZ2BQ9UIF8 2168 aaKnown RBP1.89□□□□□ -2.11
VPS4B-203ENST00000588323 ACANP16112 2415 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 PDCD11Q14690 1871 aaKnown RBP1.89□□□□□ -2.11
VPS4B-203ENST00000588323 DOCK5Q9H7D0 1870 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 A0A087WUJ7 227 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 IGHV2-26A0A0B4J1V2 119 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 IGKV1-6A0A0C4DH72 117 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 TMEM150BA6NC51 233 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 A8MWL6 223 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 C10orf142B7Z368 130 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 ZNF878C9JN71 531 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 C9JQL5 133 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 MRASO14807 208 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 DEGS1O15121 323 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 HMGB3O15347 200 aaKnown RBP1.89□□□□□ -2.11
VPS4B-203ENST00000588323 RBFOX2O43251 390 aaKnown RBP eCLIP1.89□□□□□ -2.11
VPS4B-203ENST00000588323 TNFSF15O95150 251 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 CDS2O95674 445 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 EPPINO95925 133 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 IGKV1-39P01597 117 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 APOA2P02652 100 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 IGKV1D-39P04432 117 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 DBIP07108 87 aaKnown RBP1.89□□□□□ -2.11
VPS4B-203ENST00000588323 SOD3P08294 240 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 ADRA2AP08913 450 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 SEC11BP0C7V7 166 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 UBBP0CG47 229 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 IL1RNP18510 177 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 DDTP30046 118 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 CMPK1P30085 196 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 S100A11P31949 105 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 CD200P41217 278 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 CMC4P56277 68 aaPredicted RBP1.89□□□□□ -2.11
VPS4B-203ENST00000588323 RPS20P60866 119 aaKnown RBP1.89□□□□□ -2.11
VPS4B-203ENST00000588323 RHOBP62745 196 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 PPP3R1P63098 170 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 HIST1H3AP68431 136 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 SLC35A2P78381 396 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 H3F3AP84243 136 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 EIF3IQ13347 325 aaKnown RBP1.89□□□□□ -2.11
VPS4B-203ENST00000588323 OR2F1Q13607 317 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 ESPL1Q14674 2120 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 OR8G1Q15617 311 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 LTC4SQ16873 150 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 PYCR3Q53H96 274 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 ZNF684Q5T5D7 378 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 NXNL2Q5VZ03 156 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 GLYATQ6IB77 296 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 ZNF773Q6PK81 442 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 TBPL2Q6SJ96 375 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 CLEC20AQ6ZU45 233 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 HIST2H3AQ71DI3 136 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 GLT6D1Q7Z4J2 308 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 CROCCP2Q86T23 111 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 H1FOOQ8IZA3 346 aaPredicted RBP1.89□□□□□ -2.11
VPS4B-203ENST00000588323 ZNF567Q8N184 647 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 C4orf33Q8N1A6 199 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 SLC25A45Q8N413 288 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 C12orf45Q8N5I9 185 aaPredicted RBP1.89□□□□□ -2.11
VPS4B-203ENST00000588323 ZNF555Q8NEP9 628 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 OR4D11Q8NGI4 311 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 OR4C13Q8NGP0 309 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 OR9I1Q8NGQ6 314 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 OR5H2Q8NGV7 314 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 OR1P1Q8NH06 330 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 LINC01560Q8TB33 94 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 SPPL2BQ8TCT7 592 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 SRSF12Q8WXF0 261 aaKnown RBP1.89□□□□□ -2.11
VPS4B-203ENST00000588323 PPCDCQ96CD2 204 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 DIRAS2Q96HU8 199 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 DERL3Q96Q80 235 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 EBPLQ9BY08 206 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 ZNF436Q9C0F3 470 aaPredicted RBP1.89□□□□□ -2.11
VPS4B-203ENST00000588323 DCSTAMPQ9H295 470 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 MS4A6AQ9H2W1 248 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 OR51I1Q9H343 314 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 SND1-IT1Q9HBX3 110 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 C21orf62Q9NYP8 219 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 MED11Q9P086 117 aa1.89□□□□□ -2.11
VPS4B-203ENST00000588323 TAC3Q9UHF0 121 aa1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms