RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 PRH1P02810 166 aa4.16□□□□□ -1.74
LIG3-210ENST00000588109 IGF1P05019 195 aa4.16□□□□□ -1.74
LIG3-210ENST00000588109 METTL15P1P0C7V9 234 aa4.16□□□□□ -1.74
LIG3-210ENST00000588109 EGR2P11161 476 aaPredicted RBP4.16□□□□□ -1.74
LIG3-210ENST00000588109 RPL12P30050 165 aaKnown RBP4.16□□□□□ -1.74
LIG3-210ENST00000588109 AP2S1P53680 142 aaPredicted RBP4.16□□□□□ -1.74
LIG3-210ENST00000588109 PAX9P55771 341 aa4.16□□□□□ -1.74
LIG3-210ENST00000588109 ATP5IP56385 69 aaPredicted RBP4.16□□□□□ -1.74
LIG3-210ENST00000588109 FHL2Q14192 279 aa4.16□□□□□ -1.74
LIG3-210ENST00000588109 AKIRIN2Q53H80 203 aa4.16□□□□□ -1.74
LIG3-210ENST00000588109 OR8G2PQ6IF36 304 aa4.16□□□□□ -1.74
LIG3-210ENST00000588109 SLC25A24Q6NUK1 477 aa4.16□□□□□ -1.74
LIG3-210ENST00000588109 Q6ZSV7 163 aa4.16□□□□□ -1.74
LIG3-210ENST00000588109 CENPVQ7Z7K6 275 aaPredicted RBP4.16□□□□□ -1.74
LIG3-210ENST00000588109 ZNF546Q86UE3 836 aa4.16□□□□□ -1.74
LIG3-210ENST00000588109 Q8N1X5 172 aa4.16□□□□□ -1.74
LIG3-210ENST00000588109 STPG2Q8N412 459 aa4.16□□□□□ -1.74
LIG3-210ENST00000588109 TTC9CQ8N5M4 171 aa4.16□□□□□ -1.74
LIG3-210ENST00000588109 TMEM217Q8N7C4 229 aa4.16□□□□□ -1.74
LIG3-210ENST00000588109 OR1L6Q8NGR2 347 aa4.16□□□□□ -1.74
LIG3-210ENST00000588109 FAM110DQ8TAY7 271 aaPredicted RBP4.16□□□□□ -1.74
LIG3-210ENST00000588109 TAF15Q92804 592 aaKnown RBP eCLIP4.16□□□□□ -1.74
LIG3-210ENST00000588109 PINX1Q96BK5 328 aaKnown RBP4.16□□□□□ -1.74
LIG3-210ENST00000588109 HYLS1Q96M11 299 aa4.16□□□□□ -1.74
LIG3-210ENST00000588109 NOL4LQ96MY1 436 aaPredicted RBP4.16□□□□□ -1.74
LIG3-210ENST00000588109 OR4C12Q96R67 309 aa4.16□□□□□ -1.74
LIG3-210ENST00000588109 P2RX4Q99571 388 aa4.16□□□□□ -1.74
LIG3-210ENST00000588109 MFFQ9GZY8 342 aa4.16□□□□□ -1.74
LIG3-210ENST00000588109 LYRM2Q9NU23 88 aaPredicted RBP4.16□□□□□ -1.74
LIG3-210ENST00000588109 THYN1Q9P016 225 aa4.16□□□□□ -1.74
LIG3-210ENST00000588109 F11RQ9Y624 299 aaKnown RBP4.16□□□□□ -1.74
LIG3-210ENST00000588109 MTORP42345 2549 aa4.15□□□□□ -1.74
LIG3-210ENST00000588109 RPS10-NUDT3A0A1W2PQS6 291 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 IGSF23A1L1A6 192 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 SMCO3A2RU48 225 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 PSMB11A5LHX3 300 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 HMSDA8MTL9 139 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 G3V3Q6 166 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 CORTO00230 105 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 TSPAN9O75954 239 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 OR2J3O76001 311 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 TRGV3P03979 118 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 CRYGCP07315 174 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 HKR1P10072 659 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 RNASE2P10153 161 aaKnown RBP4.15□□□□□ -1.75
LIG3-210ENST00000588109 LYL1P12980 280 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 HIST1H1BP16401 226 aaKnown RBP4.15□□□□□ -1.75
LIG3-210ENST00000588109 CTRB1P17538 263 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 OPRK1P41145 380 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 EIF2B2P49770 351 aaKnown RBP4.15□□□□□ -1.75
LIG3-210ENST00000588109 SULT1A1P50225 295 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 CRIP2P52943 208 aaPredicted RBP4.15□□□□□ -1.75
LIG3-210ENST00000588109 HBG1P69891 147 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 HBG2P69892 147 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 EWSR1Q01844 656 aaKnown RBP eCLIP4.15□□□□□ -1.75
LIG3-210ENST00000588109 BAXQ07812 192 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 C2orf83Q53S99 150 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 ASPHD1Q5U4P2 390 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 CTRB2Q6GPI1 263 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 ETFRF1Q6IPR1 90 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 TMEM65Q6PI78 240 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 TMEM14EPQ6UXP3 125 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 C19orf35Q6ZS72 473 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 ACOT7LQ6ZUV0 252 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 Q8N2B8 174 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 TMEM252Q8N6L7 170 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 ZNF114Q8NC26 417 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 OR10P1Q8NGE3 313 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 OR1S2Q8NGQ3 325 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 OR1P1Q8NH06 330 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 OR4F5Q8NH21 305 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 RNASEH2CQ8TDP1 164 aaKnown RBP4.15□□□□□ -1.75
LIG3-210ENST00000588109 MS4A10Q96PG2 267 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 SMIM3Q9BZL3 60 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 C11orf1Q9H5F2 150 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 ZNF580Q9UK33 172 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 TNFSF18Q9UNG2 199 aa4.15□□□□□ -1.75
LIG3-210ENST00000588109 NSD1Q96L73 2696 aaPredicted RBP4.15□□□□□ -1.75
LIG3-210ENST00000588109 FN1P02751 2386 aaKnown RBP4.14□□□□□ -1.75
LIG3-210ENST00000588109 MAST4O15021 2626 aa4.14□□□□□ -1.75
LIG3-210ENST00000588109 TNCP24821 2201 aa4.14□□□□□ -1.75
LIG3-210ENST00000588109 IGLV11-55A0A075B6I3 123 aa4.14□□□□□ -1.75
LIG3-210ENST00000588109 IGHV3-21A0A0B4J1V1 117 aa4.14□□□□□ -1.75
LIG3-210ENST00000588109 A0A0D9SG52 128 aa4.14□□□□□ -1.75
LIG3-210ENST00000588109 KANTRA0A1W2PQU2 76 aa4.14□□□□□ -1.75
LIG3-210ENST00000588109 C15orf62A8K5M9 175 aa4.14□□□□□ -1.75
LIG3-210ENST00000588109 H3BUA1 57 aa4.14□□□□□ -1.75
LIG3-210ENST00000588109 BOLA2-SMG1P6H3BVE0 249 aa4.14□□□□□ -1.75
LIG3-210ENST00000588109 UBE2CO00762 179 aa4.14□□□□□ -1.75
LIG3-210ENST00000588109 PLXNB1O43157 2135 aa4.14□□□□□ -1.75
LIG3-210ENST00000588109 NDUFA7O95182 113 aa4.14□□□□□ -1.75
LIG3-210ENST00000588109 SCGB1D1O95968 90 aa4.14□□□□□ -1.75
LIG3-210ENST00000588109 MT-CO2P00403 227 aa4.14□□□□□ -1.75
LIG3-210ENST00000588109 C4BPBP20851 252 aa4.14□□□□□ -1.75
LIG3-210ENST00000588109 S100A11P31949 105 aa4.14□□□□□ -1.75
LIG3-210ENST00000588109 NKX2-5P52952 324 aaPredicted RBP4.14□□□□□ -1.75
LIG3-210ENST00000588109 MFAP2P55001 183 aa4.14□□□□□ -1.75
LIG3-210ENST00000588109 TPPP2P59282 170 aa4.14□□□□□ -1.75
LIG3-210ENST00000588109 RHOGP84095 191 aa4.14□□□□□ -1.75
LIG3-210ENST00000588109 DEFA5Q01523 94 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms