RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 GATAD1Q8WUU5 269 aa9.03□□□□□ -0.96
LIG3-204ENST00000585740 MALSU1Q96EH3 234 aa9.03□□□□□ -0.96
LIG3-204ENST00000585740 RITA1Q96K30 269 aa9.03□□□□□ -0.96
LIG3-204ENST00000585740 PFDN5Q99471 154 aa9.03□□□□□ -0.96
LIG3-204ENST00000585740 TBL2Q9Y4P3 447 aaKnown RBP9.03□□□□□ -0.96
LIG3-204ENST00000585740 TCRBV4S1A1TA0A5B7 111 aa9.02□□□□□ -0.97
LIG3-204ENST00000585740 CLDN34H7C241 214 aa9.02□□□□□ -0.97
LIG3-204ENST00000585740 NBR2O15453 112 aa9.02□□□□□ -0.97
LIG3-204ENST00000585740 TGOLN2O43493 480 aa9.02□□□□□ -0.97
LIG3-204ENST00000585740 EIF3GO75821 320 aaKnown RBP eCLIP9.02□□□□□ -0.97
LIG3-204ENST00000585740 NDUFA3O95167 84 aa9.02□□□□□ -0.97
LIG3-204ENST00000585740 CRYBA1P05813 215 aa9.02□□□□□ -0.97
LIG3-204ENST00000585740 CRYGCP07315 174 aa9.02□□□□□ -0.97
LIG3-204ENST00000585740 CNTFRP26992 372 aa9.02□□□□□ -0.97
LIG3-204ENST00000585740 DLX1P56177 255 aa9.02□□□□□ -0.97
LIG3-204ENST00000585740 BPIFB3P59826 476 aa9.02□□□□□ -0.97
LIG3-204ENST00000585740 FAM78BQ5VT40 261 aa9.02□□□□□ -0.97
LIG3-204ENST00000585740 CST9LP1Q5W188 147 aa9.02□□□□□ -0.97
LIG3-204ENST00000585740 VMO1Q7Z5L0 202 aa9.02□□□□□ -0.97
LIG3-204ENST00000585740 CFHR4Q92496 578 aa9.02□□□□□ -0.97
LIG3-204ENST00000585740 RPUSD4Q96CM3 377 aaKnown RBP9.02□□□□□ -0.97
LIG3-204ENST00000585740 ACY3Q96HD9 319 aa9.02□□□□□ -0.97
LIG3-204ENST00000585740 UHRF2Q96PU4 802 aa9.02□□□□□ -0.97
LIG3-204ENST00000585740 PARLQ9H300 379 aa9.02□□□□□ -0.97
LIG3-204ENST00000585740 FBXL15Q9H469 300 aa9.02□□□□□ -0.97
LIG3-204ENST00000585740 KLF2Q9Y5W3 355 aaPredicted RBP9.02□□□□□ -0.97
LIG3-204ENST00000585740 CELSR1Q9NYQ6 3014 aa9.01□□□□□ -0.97
LIG3-204ENST00000585740 IGKV1OR2-108A0A075B7D4 117 aa9.01□□□□□ -0.97
LIG3-204ENST00000585740 C8orf88P0DMB2 117 aa9.01□□□□□ -0.97
LIG3-204ENST00000585740 AREGP15514 252 aa9.01□□□□□ -0.97
LIG3-204ENST00000585740 HOXB4P17483 251 aaPredicted RBP9.01□□□□□ -0.97
LIG3-204ENST00000585740 RAB5AP20339 215 aa9.01□□□□□ -0.97
LIG3-204ENST00000585740 GNB1P62873 340 aa9.01□□□□□ -0.97
LIG3-204ENST00000585740 MMDQ15546 238 aa9.01□□□□□ -0.97
LIG3-204ENST00000585740 ZNF674Q2M3X9 581 aa9.01□□□□□ -0.97
LIG3-204ENST00000585740 SRSF12Q8WXF0 261 aaKnown RBP9.01□□□□□ -0.97
LIG3-204ENST00000585740 YPEL4Q96NS1 127 aa9.01□□□□□ -0.97
LIG3-204ENST00000585740 TRGV9Q99603 122 aa9.01□□□□□ -0.97
LIG3-204ENST00000585740 SIRPDQ9H106 197 aa9.01□□□□□ -0.97
LIG3-204ENST00000585740 BIN3Q9NQY0 253 aa9.01□□□□□ -0.97
LIG3-204ENST00000585740 DOK5Q9P104 306 aa9.01□□□□□ -0.97
LIG3-204ENST00000585740 F11RQ9Y624 299 aaKnown RBP9.01□□□□□ -0.97
LIG3-204ENST00000585740 ARHGAP32A7KAX9 2087 aa9.01□□□□□ -0.97
LIG3-204ENST00000585740 CSMD2Q7Z408 3487 aa9.01□□□□□ -0.97
LIG3-204ENST00000585740 APCP25054 2843 aa9□□□□□ -0.97
LIG3-204ENST00000585740 TEX22C9J3V5 150 aa9□□□□□ -0.97
LIG3-204ENST00000585740 NDUFS8O00217 210 aa9□□□□□ -0.97
LIG3-204ENST00000585740 NDUFS7O75251 213 aa9□□□□□ -0.97
LIG3-204ENST00000585740 CNIH1O95406 144 aa9□□□□□ -0.97
LIG3-204ENST00000585740 DEFA4P12838 97 aa9□□□□□ -0.97
LIG3-204ENST00000585740 ZFP36P26651 326 aaKnown RBP9□□□□□ -0.97
LIG3-204ENST00000585740 UBE2E1P51965 193 aa9□□□□□ -0.97
LIG3-204ENST00000585740 RND2P52198 227 aa9□□□□□ -0.97
LIG3-204ENST00000585740 UBE2G2P60604 165 aa9□□□□□ -0.97
LIG3-204ENST00000585740 RPL23P62829 140 aaKnown RBP9□□□□□ -0.97
LIG3-204ENST00000585740 PRB3Q04118 309 aaPredicted RBP9□□□□□ -0.97
LIG3-204ENST00000585740 KLRD1Q13241 179 aa9□□□□□ -0.97
LIG3-204ENST00000585740 EBI3Q14213 229 aa9□□□□□ -0.97
LIG3-204ENST00000585740 ADIRFQ15847 76 aa9□□□□□ -0.97
LIG3-204ENST00000585740 MLANAQ16655 118 aa9□□□□□ -0.97
LIG3-204ENST00000585740 KRTAP21-3Q3LHN1 58 aa9□□□□□ -0.97
LIG3-204ENST00000585740 MIR17HGQ75NE6 70 aa9□□□□□ -0.97
LIG3-204ENST00000585740 C1QL4Q86Z23 238 aa9□□□□□ -0.97
LIG3-204ENST00000585740 FAM24BQ8N5W8 94 aa9□□□□□ -0.97
LIG3-204ENST00000585740 OR2T6Q8NHC8 308 aa9□□□□□ -0.97
LIG3-204ENST00000585740 IGFBPL1Q8WX77 278 aa9□□□□□ -0.97
LIG3-204ENST00000585740 NPIPB3Q92617 1050 aa9□□□□□ -0.97
LIG3-204ENST00000585740 ISOC2Q96AB3 205 aa9□□□□□ -0.97
LIG3-204ENST00000585740 ANAPC16Q96DE5 110 aa9□□□□□ -0.97
LIG3-204ENST00000585740 MISP3Q96FF7 219 aa9□□□□□ -0.97
LIG3-204ENST00000585740 EAF1Q96JC9 268 aaPredicted RBP9□□□□□ -0.97
LIG3-204ENST00000585740 SPOCK3Q9BQ16 436 aa9□□□□□ -0.97
LIG3-204ENST00000585740 PIMREGQ9BSJ6 248 aa9□□□□□ -0.97
LIG3-204ENST00000585740 FNDC4Q9H6D8 234 aaPredicted RBP9□□□□□ -0.97
LIG3-204ENST00000585740 LPAR2Q9HBW0 351 aa9□□□□□ -0.97
LIG3-204ENST00000585740 SEPSECSQ9HD40 501 aaKnown RBP9□□□□□ -0.97
LIG3-204ENST00000585740 DNAJC4Q9NNZ3 241 aa9□□□□□ -0.97
LIG3-204ENST00000585740 POLR3KQ9Y2Y1 108 aaPredicted RBP9□□□□□ -0.97
LIG3-204ENST00000585740 HILPDAQ9Y5L2 63 aa9□□□□□ -0.97
LIG3-204ENST00000585740 NF1P21359 2839 aa9□□□□□ -0.97
LIG3-204ENST00000585740 NAV3Q8IVL0 2385 aa8.99□□□□□ -0.97
LIG3-204ENST00000585740 ELOA3CA0A087WX78 387 aaPredicted RBP8.99□□□□□ -0.97
LIG3-204ENST00000585740 COX7A2P2O60397 106 aa8.99□□□□□ -0.97
LIG3-204ENST00000585740 TOX4O94842 621 aa8.99□□□□□ -0.97
LIG3-204ENST00000585740 REG1AP05451 166 aa8.99□□□□□ -0.97
LIG3-204ENST00000585740 FABP1P07148 127 aa8.99□□□□□ -0.97
LIG3-204ENST00000585740 ATP5G3P48201 142 aa8.99□□□□□ -0.97
LIG3-204ENST00000585740 LMO4P61968 165 aa8.99□□□□□ -0.97
LIG3-204ENST00000585740 LCN2P80188 198 aa8.99□□□□□ -0.97
LIG3-204ENST00000585740 HES1Q14469 280 aa8.99□□□□□ -0.97
LIG3-204ENST00000585740 C5orf64Q2M2E5 130 aa8.99□□□□□ -0.97
LIG3-204ENST00000585740 LDLRAD2Q5SZI1 272 aa8.99□□□□□ -0.97
LIG3-204ENST00000585740 SPATA31B1PQ5VZV4 182 aa8.99□□□□□ -0.97
LIG3-204ENST00000585740 TMEM116Q8NCL8 245 aa8.99□□□□□ -0.97
LIG3-204ENST00000585740 C11orf52Q96A22 123 aa8.99□□□□□ -0.97
LIG3-204ENST00000585740 CCL19Q99731 98 aa8.99□□□□□ -0.97
LIG3-204ENST00000585740 BPESC1Q9GZL8 116 aa8.99□□□□□ -0.97
LIG3-204ENST00000585740 C1RLQ9NZP8 487 aa8.99□□□□□ -0.97
LIG3-204ENST00000585740 PLXNB1O43157 2135 aa8.99□□□□□ -0.97
LIG3-204ENST00000585740 PDZD2O15018 2839 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms