RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 NCOA6Q14686 2063 aaPredicted RBP1.05□□□□□ -2.24
SMCHD1-204ENST00000581226 IGKV3-7A0A075B6H7 116 aa1.05□□□□□ -2.24
SMCHD1-204ENST00000581226 PMP2P02689 132 aa1.05□□□□□ -2.24
SMCHD1-204ENST00000581226 FADDQ13158 208 aa1.05□□□□□ -2.24
SMCHD1-204ENST00000581226 EDDM3AQ14507 147 aa1.05□□□□□ -2.24
SMCHD1-204ENST00000581226 SPANXN3Q5MJ09 141 aa1.05□□□□□ -2.24
SMCHD1-204ENST00000581226 SPOPLQ6IQ16 392 aa1.05□□□□□ -2.24
SMCHD1-204ENST00000581226 BPIFA4PQ86YQ2 179 aa1.05□□□□□ -2.24
SMCHD1-204ENST00000581226 OR52L1Q8NGH7 329 aa1.05□□□□□ -2.24
SMCHD1-204ENST00000581226 ITFG2Q969R8 447 aa1.05□□□□□ -2.24
SMCHD1-204ENST00000581226 ULBP3Q9BZM4 244 aa1.05□□□□□ -2.24
SMCHD1-204ENST00000581226 TECTAO75443 2155 aa1.05□□□□□ -2.24
SMCHD1-204ENST00000581226 SCN3AQ9NY46 2000 aa1.05□□□□□ -2.24
SMCHD1-204ENST00000581226 CACNA1BQ00975 2339 aa1.04□□□□□ -2.24
SMCHD1-204ENST00000581226 TMEM212A6NML5 194 aa1.04□□□□□ -2.24
SMCHD1-204ENST00000581226 MRPS14O60783 128 aaKnown RBP1.04□□□□□ -2.24
SMCHD1-204ENST00000581226 RPSAP08865 295 aaKnown RBP1.04□□□□□ -2.24
SMCHD1-204ENST00000581226 IL9P15248 144 aa1.04□□□□□ -2.24
SMCHD1-204ENST00000581226 FKBP2P26885 142 aaKnown RBP1.04□□□□□ -2.24
SMCHD1-204ENST00000581226 HOXA6P31267 233 aa1.04□□□□□ -2.24
SMCHD1-204ENST00000581226 AP3S2P59780 193 aa1.04□□□□□ -2.24
SMCHD1-204ENST00000581226 CDK10Q15131 360 aa1.04□□□□□ -2.24
SMCHD1-204ENST00000581226 ELOBQ15370 118 aa1.04□□□□□ -2.24
SMCHD1-204ENST00000581226 TMEM97Q5BJF2 176 aa1.04□□□□□ -2.24
SMCHD1-204ENST00000581226 ZNF826PQ6ZT77 177 aa1.04□□□□□ -2.24
SMCHD1-204ENST00000581226 MIR17HGQ75NE6 70 aa1.04□□□□□ -2.24
SMCHD1-204ENST00000581226 TMEM106AQ96A25 262 aa1.04□□□□□ -2.24
SMCHD1-204ENST00000581226 SCGB3A1Q96QR1 104 aa1.04□□□□□ -2.24
SMCHD1-204ENST00000581226 COMMD5Q9GZQ3 224 aa1.04□□□□□ -2.24
SMCHD1-204ENST00000581226 UQCC1Q9NVA1 299 aa1.04□□□□□ -2.24
SMCHD1-204ENST00000581226 GLTPQ9NZD2 209 aa1.04□□□□□ -2.24
SMCHD1-204ENST00000581226 SCN8AQ9UQD0 1980 aa1.04□□□□□ -2.24
SMCHD1-204ENST00000581226 NCOA1Q15788 1441 aa1.04□□□□□ -2.24
SMCHD1-204ENST00000581226 ROS1P08922 2347 aa1.04□□□□□ -2.24
SMCHD1-204ENST00000581226 TRAV9-1A0A075B6T8 112 aa1.03□□□□□ -2.24
SMCHD1-204ENST00000581226 SDCBPO00560 298 aaPredicted RBP1.03□□□□□ -2.24
SMCHD1-204ENST00000581226 CRYZL1O95825 349 aa1.03□□□□□ -2.24
SMCHD1-204ENST00000581226 IFNA6P05013 189 aa1.03□□□□□ -2.24
SMCHD1-204ENST00000581226 HTR1AP08908 422 aa1.03□□□□□ -2.24
SMCHD1-204ENST00000581226 METTL15P1P0C7V9 234 aa1.03□□□□□ -2.24
SMCHD1-204ENST00000581226 UBBP0CG47 229 aa1.03□□□□□ -2.24
SMCHD1-204ENST00000581226 HIST1H3AP68431 136 aa1.03□□□□□ -2.24
SMCHD1-204ENST00000581226 H3F3AP84243 136 aa1.03□□□□□ -2.24
SMCHD1-204ENST00000581226 STX5Q13190 355 aa1.03□□□□□ -2.24
SMCHD1-204ENST00000581226 LINC01554Q52M75 96 aa1.03□□□□□ -2.24
SMCHD1-204ENST00000581226 RPS19BP1Q86WX3 136 aaKnown RBP1.03□□□□□ -2.24
SMCHD1-204ENST00000581226 BORCS7Q96B45 105 aa1.03□□□□□ -2.24
SMCHD1-204ENST00000581226 ADAT3Q96EY9 351 aaPredicted RBP1.03□□□□□ -2.24
SMCHD1-204ENST00000581226 ADAT1Q9BUB4 502 aaKnown RBP1.03□□□□□ -2.24
SMCHD1-204ENST00000581226 YIPF3Q9GZM5 350 aa1.03□□□□□ -2.24
SMCHD1-204ENST00000581226 FBXO5Q9UKT4 447 aa1.03□□□□□ -2.24
SMCHD1-204ENST00000581226 ARHGEF28Q8N1W1 1705 aaKnown RBP1.03□□□□□ -2.24
SMCHD1-204ENST00000581226 IGKV1-9A0A0C4DH69 117 aa1.02□□□□□ -2.25
SMCHD1-204ENST00000581226 SPI1P17947 270 aa1.02□□□□□ -2.25
SMCHD1-204ENST00000581226 SRIP30626 198 aa1.02□□□□□ -2.25
SMCHD1-204ENST00000581226 DEFA3P59666 94 aa1.02□□□□□ -2.25
SMCHD1-204ENST00000581226 CDK5R1Q15078 307 aa1.02□□□□□ -2.25
SMCHD1-204ENST00000581226 NDUFA5Q16718 116 aa1.02□□□□□ -2.25
SMCHD1-204ENST00000581226 CAMSAP1Q5T5Y3 1602 aa1.02□□□□□ -2.25
SMCHD1-204ENST00000581226 OR6V1Q8N148 313 aa1.02□□□□□ -2.25
SMCHD1-204ENST00000581226 SIGLECL1Q8N7X8 197 aa1.02□□□□□ -2.25
SMCHD1-204ENST00000581226 GDPD1Q8N9F7 314 aa1.02□□□□□ -2.25
SMCHD1-204ENST00000581226 MCFD2Q8NI22 146 aa1.02□□□□□ -2.25
SMCHD1-204ENST00000581226 CT55Q8WUE5 264 aa1.02□□□□□ -2.25
SMCHD1-204ENST00000581226 ADGRL3Q9HAR2 1447 aa1.02□□□□□ -2.25
SMCHD1-204ENST00000581226 PLXNA4Q9HCM2 1894 aa1.02□□□□□ -2.25
SMCHD1-204ENST00000581226 CKLFQ9UBR5 152 aa1.02□□□□□ -2.25
SMCHD1-204ENST00000581226 ERGIC3Q9Y282 383 aa1.02□□□□□ -2.25
SMCHD1-204ENST00000581226 MCM3APO60318 1980 aa1.01□□□□□ -2.25
SMCHD1-204ENST00000581226 MYH10P35580 1976 aa1.01□□□□□ -2.25
SMCHD1-204ENST00000581226 FAM159BA6NKW6 160 aa1.01□□□□□ -2.25
SMCHD1-204ENST00000581226 TMEM210A6NLX4 147 aa1.01□□□□□ -2.25
SMCHD1-204ENST00000581226 OR2T1O43869 369 aa1.01□□□□□ -2.25
SMCHD1-204ENST00000581226 ASAH2BP0C7U1 165 aa1.01□□□□□ -2.25
SMCHD1-204ENST00000581226 CAPZBP47756 277 aa1.01□□□□□ -2.25
SMCHD1-204ENST00000581226 C10orf55Q5SWW7 151 aa1.01□□□□□ -2.25
SMCHD1-204ENST00000581226 DEFB128Q7Z7B8 93 aa1.01□□□□□ -2.25
SMCHD1-204ENST00000581226 S100A7AQ86SG5 101 aa1.01□□□□□ -2.25
SMCHD1-204ENST00000581226 OR5A1Q8NGJ0 315 aa1.01□□□□□ -2.25
SMCHD1-204ENST00000581226 OR51A2Q8NGJ7 313 aa1.01□□□□□ -2.25
SMCHD1-204ENST00000581226 WFDC5Q8TCV5 224 aa1.01□□□□□ -2.25
SMCHD1-204ENST00000581226 DGCR14Q96DF8 476 aaKnown RBP1.01□□□□□ -2.25
SMCHD1-204ENST00000581226 MED9Q9NWA0 146 aa1.01□□□□□ -2.25
SMCHD1-204ENST00000581226 DOCK4Q8N1I0 1966 aa1.01□□□□□ -2.25
SMCHD1-204ENST00000581226 MED1Q15648 1581 aaPredicted RBP1□□□□□ -2.25
SMCHD1-204ENST00000581226 PIRO00625 290 aa1□□□□□ -2.25
SMCHD1-204ENST00000581226 HCRTO43612 131 aa1□□□□□ -2.25
SMCHD1-204ENST00000581226 PDE6DO43924 150 aa1□□□□□ -2.25
SMCHD1-204ENST00000581226 IFNA10P01566 189 aa1□□□□□ -2.25
SMCHD1-204ENST00000581226 SERPINE1P05121 402 aa1□□□□□ -2.25
SMCHD1-204ENST00000581226 CST2P09228 141 aa1□□□□□ -2.25
SMCHD1-204ENST00000581226 RBP1P09455 135 aa1□□□□□ -2.25
SMCHD1-204ENST00000581226 CTAG1AP78358 180 aa1□□□□□ -2.25
SMCHD1-204ENST00000581226 PLCXD2Q0VAA5 305 aa1□□□□□ -2.25
SMCHD1-204ENST00000581226 SURF2Q15527 256 aaPredicted RBP1□□□□□ -2.25
SMCHD1-204ENST00000581226 DNAJC9Q8WXX5 260 aa1□□□□□ -2.25
SMCHD1-204ENST00000581226 REG4Q9BYZ8 158 aa1□□□□□ -2.25
SMCHD1-204ENST00000581226 TMEM133Q9H2Q1 129 aa1□□□□□ -2.25
SMCHD1-204ENST00000581226 hCG_1818297A0A087WSY0 165 aa0.99□□□□□ -2.25
SMCHD1-204ENST00000581226 TRAV1-1A0A0B4J248 108 aa0.99□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms