RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 SRD5A3Q9H8P0 318 aa17.92■□□□□ 0.46
SHMT1-206ENST00000579558 SHPKQ9UHJ6 478 aa17.92■□□□□ 0.46
SHMT1-206ENST00000579558 NXPH3O95157 252 aa17.91■□□□□ 0.46
SHMT1-206ENST00000579558 LYZL2Q7Z4W2 148 aa17.91■□□□□ 0.46
SHMT1-206ENST00000579558 CACFD1Q9UGQ2 172 aa17.91■□□□□ 0.46
SHMT1-206ENST00000579558 INPP1P49441 399 aa17.9■□□□□ 0.46
SHMT1-206ENST00000579558 TMEM128Q5BJH2 165 aa17.9■□□□□ 0.46
SHMT1-206ENST00000579558 NMSQ5H8A3 153 aa17.9■□□□□ 0.46
SHMT1-206ENST00000579558 LAMTOR1Q6IAA8 161 aa17.9■□□□□ 0.46
SHMT1-206ENST00000579558 OR10C1Q96KK4 312 aa17.9■□□□□ 0.46
SHMT1-206ENST00000579558 SPATA25Q9BR10 227 aa17.9■□□□□ 0.46
SHMT1-206ENST00000579558 FNDC4Q9H6D8 234 aaPredicted RBP17.9■□□□□ 0.46
SHMT1-206ENST00000579558 STAB2Q8WWQ8 2551 aa17.9■□□□□ 0.46
SHMT1-206ENST00000579558 TENM3Q9P273 2699 aa17.9■□□□□ 0.46
SHMT1-206ENST00000579558 TSPAN4O14817 238 aa17.89■□□□□ 0.45
SHMT1-206ENST00000579558 CCR6P51684 374 aa17.89■□□□□ 0.45
SHMT1-206ENST00000579558 SMCO1Q147U7 214 aa17.89■□□□□ 0.45
SHMT1-206ENST00000579558 TRIQKQ629K1 86 aa17.89■□□□□ 0.45
SHMT1-206ENST00000579558 LINC00322Q6ZN03 302 aaPredicted RBP17.89■□□□□ 0.45
SHMT1-206ENST00000579558 SPAG8Q99932 426 aaPredicted RBP17.89■□□□□ 0.45
SHMT1-206ENST00000579558 NDUFA13Q9P0J0 144 aa17.89■□□□□ 0.45
SHMT1-206ENST00000579558 SMPXQ9UHP9 88 aa17.89■□□□□ 0.45
SHMT1-206ENST00000579558 PIGBOS1A0A0B4J2F0 54 aa17.88■□□□□ 0.45
SHMT1-206ENST00000579558 IGHV7-4-1A0A0J9YVY3 117 aa17.88■□□□□ 0.45
SHMT1-206ENST00000579558 RBMY1BA6NDE4 496 aaKnown RBP17.88■□□□□ 0.45
SHMT1-206ENST00000579558 RBMY1EA6NEQ0 496 aaKnown RBP17.88■□□□□ 0.45
SHMT1-206ENST00000579558 TMEM50AO95807 157 aa17.88■□□□□ 0.45
SHMT1-206ENST00000579558 RBMY1DP0C7P1 496 aaKnown RBP17.88■□□□□ 0.45
SHMT1-206ENST00000579558 VAMP1P23763 118 aa17.88■□□□□ 0.45
SHMT1-206ENST00000579558 BAK1Q16611 211 aa17.88■□□□□ 0.45
SHMT1-206ENST00000579558 MLANAQ16655 118 aa17.88■□□□□ 0.45
SHMT1-206ENST00000579558 C2orf83Q53S99 150 aa17.88■□□□□ 0.45
SHMT1-206ENST00000579558 ZNF600Q6ZNG1 722 aa17.88■□□□□ 0.45
SHMT1-206ENST00000579558 TMEM116Q8NCL8 245 aa17.88■□□□□ 0.45
SHMT1-206ENST00000579558 SLC24A4Q8NFF2 622 aa17.88■□□□□ 0.45
SHMT1-206ENST00000579558 HIPK2Q9H2X6 1198 aa17.88■□□□□ 0.45
SHMT1-206ENST00000579558 MRPL36Q9P0J6 103 aaKnown RBP17.88■□□□□ 0.45
SHMT1-206ENST00000579558 IGHV3-49A0A0A0MS15 119 aa17.87■□□□□ 0.45
SHMT1-206ENST00000579558 RPS10-NUDT3A0A1W2PQS6 291 aa17.87■□□□□ 0.45
SHMT1-206ENST00000579558 TOMM20LQ6UXN7 152 aa17.87■□□□□ 0.45
SHMT1-206ENST00000579558 OR4X1Q8NH49 305 aa17.87■□□□□ 0.45
SHMT1-206ENST00000579558 GINS3Q9BRX5 216 aa17.87■□□□□ 0.45
SHMT1-206ENST00000579558 RHPN1-AS1Q9BWJ2 59 aa17.87■□□□□ 0.45
SHMT1-206ENST00000579558 RYR3Q15413 4870 aa17.86■□□□□ 0.45
SHMT1-206ENST00000579558 TRAV14DV4A0A0A6YYC5 116 aa17.86■□□□□ 0.45
SHMT1-206ENST00000579558 CHEK1O14757 476 aa17.86■□□□□ 0.45
SHMT1-206ENST00000579558 CLN5O75503 358 aa17.86■□□□□ 0.45
SHMT1-206ENST00000579558 TNFRSF9Q07011 255 aa17.86■□□□□ 0.45
SHMT1-206ENST00000579558 RBMS2Q15434 407 aaKnown RBP17.86■□□□□ 0.45
SHMT1-206ENST00000579558 CENPSQ8N2Z9 138 aa17.86■□□□□ 0.45
SHMT1-206ENST00000579558 HSPB7Q9UBY9 170 aa17.86■□□□□ 0.45
SHMT1-206ENST00000579558 PUS1Q9Y606 427 aaKnown RBP eCLIP17.86■□□□□ 0.45
SHMT1-206ENST00000579558 DUXBA0A1W2PPF3 345 aa17.85■□□□□ 0.45
SHMT1-206ENST00000579558 SCGB2A1O75556 95 aa17.85■□□□□ 0.45
SHMT1-206ENST00000579558 NPY1RP25929 384 aa17.85■□□□□ 0.45
SHMT1-206ENST00000579558 OR1S1Q8NH92 325 aa17.85■□□□□ 0.45
SHMT1-206ENST00000579558 RNASEH2CQ8TDP1 164 aaKnown RBP17.85■□□□□ 0.45
SHMT1-206ENST00000579558 RNF2Q99496 336 aa17.85■□□□□ 0.45
SHMT1-206ENST00000579558 A0A1B0GU03 582 aa17.84■□□□□ 0.45
SHMT1-206ENST00000579558 NAP1L6A6NFF2 107 aa17.84■□□□□ 0.45
SHMT1-206ENST00000579558 SFT2D2O95562 160 aa17.84■□□□□ 0.45
SHMT1-206ENST00000579558 PPP1R1AQ13522 171 aa17.84■□□□□ 0.45
SHMT1-206ENST00000579558 NOXA1Q86UR1 476 aa17.84■□□□□ 0.45
SHMT1-206ENST00000579558 DTD1Q8TEA8 209 aa17.84■□□□□ 0.45
SHMT1-206ENST00000579558 SDHCQ99643 169 aaPredicted RBP17.84■□□□□ 0.45
SHMT1-206ENST00000579558 RBKSQ9H477 322 aa17.84■□□□□ 0.45
SHMT1-206ENST00000579558 ZFAND3Q9H8U3 227 aa17.84■□□□□ 0.45
SHMT1-206ENST00000579558 IGHV3OR16-13A0A075B7E8 117 aa17.83■□□□□ 0.44
SHMT1-206ENST00000579558 IGHV3-74A0A0B4J1X5 117 aa17.83■□□□□ 0.44
SHMT1-206ENST00000579558 LINC00854A0A1B0GVQ3 168 aa17.83■□□□□ 0.44
SHMT1-206ENST00000579558 OR4C46A6NHA9 309 aa17.83■□□□□ 0.44
SHMT1-206ENST00000579558 IFNA10P01566 189 aa17.83■□□□□ 0.44
SHMT1-206ENST00000579558 LRTM2Q8N967 370 aa17.83■□□□□ 0.44
SHMT1-206ENST00000579558 TMEM170AQ8WVE7 144 aa17.83■□□□□ 0.44
SHMT1-206ENST00000579558 CITED4Q96RK1 184 aa17.83■□□□□ 0.44
SHMT1-206ENST00000579558 RETNQ9HD89 108 aa17.83■□□□□ 0.44
SHMT1-206ENST00000579558 UBQLN2Q9UHD9 624 aa17.83■□□□□ 0.44
SHMT1-206ENST00000579558 TRAV30A0A087WSZ9 112 aa17.82■□□□□ 0.44
SHMT1-206ENST00000579558 SLC25A4P12235 298 aa17.82■□□□□ 0.44
SHMT1-206ENST00000579558 BMI1P35226 326 aa17.82■□□□□ 0.44
SHMT1-206ENST00000579558 NDUFB6O95139 128 aa17.81■□□□□ 0.44
SHMT1-206ENST00000579558 RND2P52198 227 aa17.81■□□□□ 0.44
SHMT1-206ENST00000579558 TIGITQ495A1 244 aa17.81■□□□□ 0.44
SHMT1-206ENST00000579558 ETFRF1Q6IPR1 90 aa17.81■□□□□ 0.44
SHMT1-206ENST00000579558 PRSS54Q6PEW0 395 aa17.81■□□□□ 0.44
SHMT1-206ENST00000579558 MUC7Q8TAX7 377 aa17.81■□□□□ 0.44
SHMT1-206ENST00000579558 U3KQ87 197 aa17.81■□□□□ 0.44
SHMT1-206ENST00000579558 C3orf84H3BNL1 204 aa17.8■□□□□ 0.44
SHMT1-206ENST00000579558 IGKV1-17P01599 117 aa17.8■□□□□ 0.44
SHMT1-206ENST00000579558 UBE2MP61081 183 aaKnown RBP17.8■□□□□ 0.44
SHMT1-206ENST00000579558 ST8SIA2Q92186 375 aa17.8■□□□□ 0.44
SHMT1-206ENST00000579558 GGTLC1Q9BX51 225 aa17.8■□□□□ 0.44
SHMT1-206ENST00000579558 IGKV3-7A0A075B6H7 116 aa17.79■□□□□ 0.44
SHMT1-206ENST00000579558 LOC102724200A0A096LPH7 203 aaPredicted RBP17.79■□□□□ 0.44
SHMT1-206ENST00000579558 CENPXA8MT69 81 aa17.79■□□□□ 0.44
SHMT1-206ENST00000579558 PITX3O75364 302 aa17.79■□□□□ 0.44
SHMT1-206ENST00000579558 APOHP02749 345 aaPredicted RBP17.79■□□□□ 0.44
SHMT1-206ENST00000579558 SLC25A6P12236 298 aa17.79■□□□□ 0.44
SHMT1-206ENST00000579558 IL7P13232 177 aa17.79■□□□□ 0.44
SHMT1-206ENST00000579558 ODF3L2Q3SX64 289 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms