RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 C8orf31Q8N9H6 132 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 H1FXQ92522 213 aaKnown RBP4.75□□□□□ -1.65
VPS39-209ENST00000568029 RSG1Q9BU20 258 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 ACTR3CQ9C0K3 210 aaPredicted RBP4.75□□□□□ -1.65
VPS39-209ENST00000568029 RPRMQ9NS64 109 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 SLC35D1Q9NTN3 355 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 HIF1ANQ9NWT6 349 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 CISD1Q9NZ45 108 aaKnown RBP4.75□□□□□ -1.65
VPS39-209ENST00000568029 PRNDQ9UKY0 176 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 FOXA2Q9Y261 457 aaPredicted RBP4.75□□□□□ -1.65
VPS39-209ENST00000568029 VWFP04275 2813 aa4.75□□□□□ -1.65
VPS39-209ENST00000568029 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.74□□□□□ -1.654e-10■■■■□ 20.9
VPS39-209ENST00000568029 DSCAMO60469 2012 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 SAA2-SAA4A0A096LPE2 208 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 UBE2L5PA0A1B0GUS4 154 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 A0A1B0GV50 99 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 A0A1W2PPE3 182 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 FAM74A7A6NL05 159 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 C15orf61A6NNL5 157 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 C9JQL5 133 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 DVL1O14640 695 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 SLC31A2O15432 143 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 MPDU1O75352 247 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 IFNA4P05014 189 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 SAA2P0DJI9 122 aaPredicted RBP4.74□□□□□ -1.65
VPS39-209ENST00000568029 OR13C7P0DN81 318 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 ADCYAP1P18509 176 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 LOXP28300 417 aaPredicted RBP4.74□□□□□ -1.65
VPS39-209ENST00000568029 CD1BP29016 333 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 NPBWR1P48145 328 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 HOXA1P49639 335 aaPredicted RBP4.74□□□□□ -1.65
VPS39-209ENST00000568029 GNG10P50151 68 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 LINC00205P59089 165 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 OR2B8PP59922 312 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 CCL20P78556 96 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 DLK1P80370 383 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 RAB31Q13636 194 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 HNF4GQ14541 408 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 RHEBQ15382 184 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 HAGHQ16775 308 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 VWC2Q2TAL6 325 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 ACOT6Q3I5F7 207 aaPredicted RBP4.74□□□□□ -1.65
VPS39-209ENST00000568029 ZNF672Q499Z4 452 aaPredicted RBP4.74□□□□□ -1.65
VPS39-209ENST00000568029 FAM74A3Q4VXF1 159 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 OR4A47Q6IF82 309 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 FAM71F2Q6NXP2 309 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 ZCCHC24Q8N2G6 241 aaKnown RBP4.74□□□□□ -1.65
VPS39-209ENST00000568029 LINC00311Q8N616 119 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 OR10G4Q8NGN3 311 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 OR13D1Q8NGV5 346 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 OR10X1Q8NGY0 326 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 LEAP2Q969E1 77 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 TMEM186Q96B77 213 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 SCRT1Q9BWW7 348 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 RAB1BQ9H0U4 201 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 RPS10P5Q9NQ39 176 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 KCNIP2Q9NS61 270 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 DCAF16Q9NXF7 216 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 TCF19Q9Y242 345 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 PAM16Q9Y3D7 125 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 RFNGQ9Y644 331 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 ABCA1O95477 2261 aa4.74□□□□□ -1.65
VPS39-209ENST00000568029 CTXND1A0A1B0GTU2 59 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 LOC105371267A0A1B0GV96 52 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 hCG_1809904A0A1W2PP81 198 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 A0A1W2PPE2 198 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 A0A1W2PR64 198 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 A0A1W2PRV1 198 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 SMCO3A2RU48 225 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 MAP1LC3B2A6NCE7 125 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 C15orf62A8K5M9 175 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 PMS2P5A8MQ11 134 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 PRSS47A8MTI9 375 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 UPK2O00526 184 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 NDUFS7O75251 213 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 NDUFS6O75380 124 aaKnown RBP4.73□□□□□ -1.65
VPS39-209ENST00000568029 TSPAN9O75954 239 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 KBTBD11O94819 623 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 OR2C1O95371 312 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 ARG1P05089 322 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 SNRNP70P08621 437 aaKnown RBP4.73□□□□□ -1.65
VPS39-209ENST00000568029 SRP19P09132 144 aaKnown RBP4.73□□□□□ -1.65
VPS39-209ENST00000568029 CT45A6P0DMU7 189 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 CT45A5P0DMU8 189 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 CT45A7P0DMV0 189 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 MC5RP33032 325 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 VDAC2P45880 294 aaPredicted RBP4.73□□□□□ -1.65
VPS39-209ENST00000568029 AMTP48728 403 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 PPOXP50336 477 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 PRRX1P54821 245 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 FFAR4Q5NUL3 377 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 DUX4L9Q6RFH8 374 aaPredicted RBP4.73□□□□□ -1.65
VPS39-209ENST00000568029 LCN15Q6UWW0 184 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 LYPD2Q6UXB3 125 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 ZNF833PQ6ZTB9 187 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 TCF23Q7RTU1 214 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 VKORC1L1Q8N0U8 176 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 MUC15Q8N387 334 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 C15orf54Q8N8G6 183 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 ZNF383Q8NA42 475 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms