RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 C5orf49A4QMS7 147 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 NDUFC2-KCTD14E9PQ53 114 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 ATP6V1G2-DDX39BF2Z307 99 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 F8W036 122 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 ISLRO14498 428 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 FBP1P09467 338 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 CECR9P0C854 216 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 EVX1P49640 407 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 DEFA3P59666 94 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 RPS20P60866 119 aaKnown RBP3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 CKS1BP61024 79 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 SNRPD2P62316 118 aaKnown RBP3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 FABP5Q01469 135 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 KCNJ8Q15842 424 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 C10orf128Q5T292 105 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 ATAD3CQ5T2N8 411 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 NXNL2Q5VZ03 156 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 ACP7Q6ZNF0 438 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 HSD17B13Q7Z5P4 300 aaPredicted RBP3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 HMGN2P46Q86SG4 172 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 SLC22A24Q8N4F4 322 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 OR9Q1Q8NGQ5 310 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 SLC35E1Q96K37 410 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 GABARAPL1Q9H0R8 117 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 RERGLQ9H628 205 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 CMC2Q9NRP2 79 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 CTSZQ9UBR2 303 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 WASHC3Q9Y3C0 194 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 TPRKBQ9Y3C4 175 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 ZNF706Q9Y5V0 76 aaPredicted RBP3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 PCSK5Q92824 1860 aa3.82□□□□□ -1.8
VPS35P1-201ENST00000563400 IGHV3-15A0A0B4J1V0 119 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 A0A0J9YXY3 114 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 ZNF670-ZNF695F2Z2N8 137 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 KRTAP4-16G5E9R7 235 aaPredicted RBP3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 PEX7O00628 323 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 CRYBA1P05813 215 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 TSPAN19P0C672 248 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 CRYGSP22914 178 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 GATA2P23769 480 aaPredicted RBP3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 ERP29P30040 261 aaKnown RBP3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 MP68P56378 58 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 ERCC8Q13216 396 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 BATFQ16520 125 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 IAH1Q2TAA2 248 aaPredicted RBP3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 COA6Q5JTJ3 125 aaKnown RBP3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 C2orf66Q6UXQ4 117 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 TMUB2Q71RG4 321 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 ZNF584Q8IVC4 421 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 C8orf59Q8N0T1 100 aaPredicted RBP3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 ZNF645Q8N7E2 425 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 ZNF433Q8N7K0 673 aaPredicted RBP3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 TMEM75Q8N9X5 138 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 OR8B12Q8NGG6 310 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 OR2T27Q8NH04 317 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 LHFPL5Q8TAF8 219 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 REEP6Q96HR9 211 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 OR2M2Q96R28 347 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 GPER1Q99527 375 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 YIPF3Q9GZM5 350 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 TMEM222Q9H0R3 208 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 PARP11Q9NR21 331 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 TMEM38BQ9NVV0 291 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 TVP23BQ9NYZ1 205 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 RSL24D1Q9UHA3 163 aaKnown RBP3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 ATRXP46100 2492 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 DNAJC13O75165 2243 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 SVILO95425 2214 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 ZGRF1Q86YA3 2104 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 TET2Q6N021 2002 aaPredicted RBP3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 USP24Q9UPU5 2620 aa3.81□□□□□ -1.8
VPS35P1-201ENST00000563400 POLEQ07864 2286 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 IGKV1D-42A0A075B6H8 117 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 TRAV27A0A087WT01 109 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 TRAV26-2A0A0B4J265 109 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 LOC100130705A0A1B0GUX0 176 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 FAM172BPA6NC97 362 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 TRAF3IP2O43734 574 aaPredicted RBP3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 MRPS14O60783 128 aaKnown RBP3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 SULT1C4O75897 302 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 LYZL6O75951 148 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 CYB5AP00167 134 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 CGAP01215 116 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 CD2P06729 351 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 IL3RAP26951 378 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 DDTP30046 118 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 DAZ2Q13117 558 aaKnown RBP3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 IL15RAQ13261 267 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 ABCA11PQ4W5N1 156 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 CEMP1Q6PRD7 247 aaPredicted RBP3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 DAZ4Q86SG3 579 aaKnown RBP3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 FAM24BQ8N5W8 94 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 SLC30A7Q8NEW0 376 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 OR4K13Q8NH42 304 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 PFN4Q8NHR9 129 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 APOBEC3DQ96AK3 386 aaPredicted RBP3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 ANAPC13Q9BS18 74 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 CCDC32Q9BV29 185 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 HES4Q9HCC6 221 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 DYNLRB1Q9NP97 96 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms