RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 OR10P1Q8NGE3 313 aa12.85□□□□□ -0.35
VPS4A-202ENST00000562754 ZNF502Q8TBZ5 544 aa12.85□□□□□ -0.35
VPS4A-202ENST00000562754 VN1R17PQ8TDU5 208 aa12.85□□□□□ -0.35
VPS4A-202ENST00000562754 CCDC140Q96MF4 163 aa12.85□□□□□ -0.35
VPS4A-202ENST00000562754 TENM1Q9UKZ4 2725 aa12.84□□□□□ -0.35
VPS4A-202ENST00000562754 RPS10-NUDT3A0A1W2PQS6 291 aa12.84□□□□□ -0.35
VPS4A-202ENST00000562754 TCRBV4S1A1TA0A5B7 111 aa12.84□□□□□ -0.35
VPS4A-202ENST00000562754 PFDN1O60925 122 aa12.84□□□□□ -0.35
VPS4A-202ENST00000562754 GPX4P36969 197 aaPredicted RBP12.84□□□□□ -0.35
VPS4A-202ENST00000562754 RIPPLY3P57055 190 aa12.84□□□□□ -0.35
VPS4A-202ENST00000562754 DLK1P80370 383 aa12.84□□□□□ -0.35
VPS4A-202ENST00000562754 BAXQ07812 192 aa12.84□□□□□ -0.35
VPS4A-202ENST00000562754 KHDC1LQ5JSQ8 128 aa12.84□□□□□ -0.35
VPS4A-202ENST00000562754 EEF1AKMT3Q96AZ1 226 aa12.84□□□□□ -0.35
VPS4A-202ENST00000562754 UBE2E2Q96LR5 201 aa12.84□□□□□ -0.35
VPS4A-202ENST00000562754 OR5B12Q96R08 314 aa12.84□□□□□ -0.35
VPS4A-202ENST00000562754 C21orf62Q9NYP8 219 aa12.84□□□□□ -0.35
VPS4A-202ENST00000562754 A0A0G2JLM5 398 aa12.83□□□□□ -0.36
VPS4A-202ENST00000562754 HMSDA8MTL9 139 aa12.83□□□□□ -0.36
VPS4A-202ENST00000562754 ADARB2-AS1A8MUL3 147 aa12.83□□□□□ -0.36
VPS4A-202ENST00000562754 RND2P52198 227 aa12.83□□□□□ -0.36
VPS4A-202ENST00000562754 ZFP69Q49AA0 526 aa12.83□□□□□ -0.36
VPS4A-202ENST00000562754 ZNF343Q6P1L6 599 aa12.83□□□□□ -0.36
VPS4A-202ENST00000562754 ACSM6Q6P461 480 aa12.83□□□□□ -0.36
VPS4A-202ENST00000562754 OR5C1Q8NGR4 320 aa12.83□□□□□ -0.36
VPS4A-202ENST00000562754 CACNG8Q8WXS5 425 aa12.83□□□□□ -0.36
VPS4A-202ENST00000562754 CXorf58Q96LI9 332 aa12.83□□□□□ -0.36
VPS4A-202ENST00000562754 ZC4H2Q9NQZ6 224 aa12.83□□□□□ -0.36
VPS4A-202ENST00000562754 SCAF4O95104 1147 aaKnown RBP12.82□□□□□ -0.36
VPS4A-202ENST00000562754 TRBV12-3P01733 135 aa12.82□□□□□ -0.36
VPS4A-202ENST00000562754 LGALS1P09382 135 aaKnown RBP12.82□□□□□ -0.36
VPS4A-202ENST00000562754 CXCL2P19875 107 aa12.82□□□□□ -0.36
VPS4A-202ENST00000562754 NUP62P37198 522 aaPredicted RBP12.82□□□□□ -0.36
VPS4A-202ENST00000562754 CDX1P47902 265 aaPredicted RBP12.82□□□□□ -0.36
VPS4A-202ENST00000562754 HBG1P69891 147 aa12.82□□□□□ -0.36
VPS4A-202ENST00000562754 HBG2P69892 147 aa12.82□□□□□ -0.36
VPS4A-202ENST00000562754 GAMTQ14353 236 aa12.82□□□□□ -0.36
VPS4A-202ENST00000562754 CLINT1Q14677 625 aa12.82□□□□□ -0.36
VPS4A-202ENST00000562754 ETFRF1Q6IPR1 90 aa12.82□□□□□ -0.36
VPS4A-202ENST00000562754 INO80EQ8NBZ0 244 aaPredicted RBP12.82□□□□□ -0.36
VPS4A-202ENST00000562754 OR1S2Q8NGQ3 325 aa12.82□□□□□ -0.36
VPS4A-202ENST00000562754 OR4X1Q8NH49 305 aa12.82□□□□□ -0.36
VPS4A-202ENST00000562754 ACY3Q96HD9 319 aa12.82□□□□□ -0.36
VPS4A-202ENST00000562754 SLC35E1Q96K37 410 aa12.82□□□□□ -0.36
VPS4A-202ENST00000562754 CITED1Q99966 193 aa12.82□□□□□ -0.36
VPS4A-202ENST00000562754 SMIM3Q9BZL3 60 aa12.82□□□□□ -0.36
VPS4A-202ENST00000562754 MFFQ9GZY8 342 aa12.82□□□□□ -0.36
VPS4A-202ENST00000562754 FBXL17Q9UF56 701 aa12.82□□□□□ -0.36
VPS4A-202ENST00000562754 TSSC4Q9Y5U2 329 aaPredicted RBP12.82□□□□□ -0.36
VPS4A-202ENST00000562754 COL6A5A8TX70 2615 aa12.82□□□□□ -0.36
VPS4A-202ENST00000562754 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.81□□□□□ -0.36
VPS4A-202ENST00000562754 TRBV7-1A0A0A6YYK4 115 aa12.81□□□□□ -0.36
VPS4A-202ENST00000562754 A0A1W2PRX2 142 aa12.81□□□□□ -0.36
VPS4A-202ENST00000562754 S100A11P31949 105 aa12.81□□□□□ -0.36
VPS4A-202ENST00000562754 FCGR2BP31994 310 aaPredicted RBP12.81□□□□□ -0.36
VPS4A-202ENST00000562754 GPR183P32249 361 aa12.81□□□□□ -0.36
VPS4A-202ENST00000562754 EIF2B2P49770 351 aaKnown RBP12.81□□□□□ -0.36
VPS4A-202ENST00000562754 AP2S1P53680 142 aaPredicted RBP12.81□□□□□ -0.36
VPS4A-202ENST00000562754 MFAP4P55083 255 aa12.81□□□□□ -0.36
VPS4A-202ENST00000562754 VWC2Q2TAL6 325 aa12.81□□□□□ -0.36
VPS4A-202ENST00000562754 CLEC19AQ6UXS0 136 aa12.81□□□□□ -0.36
VPS4A-202ENST00000562754 LILRB2Q8N423 598 aa12.81□□□□□ -0.36
VPS4A-202ENST00000562754 TMEM116Q8NCL8 245 aa12.81□□□□□ -0.36
VPS4A-202ENST00000562754 KLHL30-AS1Q8NEE0 82 aa12.81□□□□□ -0.36
VPS4A-202ENST00000562754 C4orf3Q8WVX3 66 aa12.81□□□□□ -0.36
VPS4A-202ENST00000562754 NPIPB3Q92617 1050 aa12.81□□□□□ -0.36
VPS4A-202ENST00000562754 TMEM147Q9BVK8 224 aa12.81□□□□□ -0.36
VPS4A-202ENST00000562754 WFDC1Q9HC57 220 aa12.81□□□□□ -0.36
VPS4A-202ENST00000562754 SMCO3A2RU48 225 aa12.8□□□□□ -0.36
VPS4A-202ENST00000562754 ANKRD34BA5PLL1 514 aa12.8□□□□□ -0.36
VPS4A-202ENST00000562754 FNDC10F2Z333 226 aa12.8□□□□□ -0.36
VPS4A-202ENST00000562754 I3L521 148 aa12.8□□□□□ -0.36
VPS4A-202ENST00000562754 ZNF345Q14585 488 aa12.8□□□□□ -0.36
VPS4A-202ENST00000562754 Q56UQ5 140 aa12.8□□□□□ -0.36
VPS4A-202ENST00000562754 UBAC2Q8NBM4 344 aa12.8□□□□□ -0.36
VPS4A-202ENST00000562754 HYLS1Q96M11 299 aa12.8□□□□□ -0.36
VPS4A-202ENST00000562754 TXN2Q99757 166 aa12.8□□□□□ -0.36
VPS4A-202ENST00000562754 GGACTQ9BVM4 153 aa12.8□□□□□ -0.36
VPS4A-202ENST00000562754 UQCC1Q9NVA1 299 aa12.8□□□□□ -0.36
VPS4A-202ENST00000562754 IGKV1OR2-108A0A075B7D4 117 aa12.79□□□□□ -0.36
VPS4A-202ENST00000562754 UBE2L5PA0A1B0GUS4 154 aa12.79□□□□□ -0.36
VPS4A-202ENST00000562754 OR2T8A6NH00 312 aa12.79□□□□□ -0.36
VPS4A-202ENST00000562754 NUDT19A8MXV4 375 aa12.79□□□□□ -0.36
VPS4A-202ENST00000562754 PPP5D1E7EU14 171 aa12.79□□□□□ -0.36
VPS4A-202ENST00000562754 BOLA2-SMG1P6H3BVE0 249 aa12.79□□□□□ -0.36
VPS4A-202ENST00000562754 CLN5O75503 358 aa12.79□□□□□ -0.36
VPS4A-202ENST00000562754 NPBWR1P48145 328 aa12.79□□□□□ -0.36
VPS4A-202ENST00000562754 NKX2-5P52952 324 aaPredicted RBP12.79□□□□□ -0.36
VPS4A-202ENST00000562754 RUNX1Q01196 453 aa12.79□□□□□ -0.36
VPS4A-202ENST00000562754 AKR1C1Q04828 323 aa12.79□□□□□ -0.36
VPS4A-202ENST00000562754 OR2F1Q13607 317 aa12.79□□□□□ -0.36
VPS4A-202ENST00000562754 ATP6V1FQ16864 119 aa12.79□□□□□ -0.36
VPS4A-202ENST00000562754 DEFB136Q30KP8 78 aa12.79□□□□□ -0.36
VPS4A-202ENST00000562754 C12orf54Q6X4T0 127 aa12.79□□□□□ -0.36
VPS4A-202ENST00000562754 C8orf86Q6ZUL3 223 aa12.79□□□□□ -0.36
VPS4A-202ENST00000562754 KCNRGQ8N5I3 272 aa12.79□□□□□ -0.36
VPS4A-202ENST00000562754 THAP8Q8NA92 274 aa12.79□□□□□ -0.36
VPS4A-202ENST00000562754 ZNF414Q96IQ9 312 aa12.79□□□□□ -0.36
VPS4A-202ENST00000562754 ATP6V0BQ99437 205 aa12.79□□□□□ -0.36
VPS4A-202ENST00000562754 MDFIQ99750 246 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms