RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 KLF13Q9Y2Y9 288 aaPredicted RBP13.45□□□□□ -0.26
TPM1-228ENST00000560975 DSPP15924 2871 aaKnown RBP13.45□□□□□ -0.26
TPM1-228ENST00000560975 OR2J3O76001 311 aa13.45□□□□□ -0.26
TPM1-228ENST00000560975 C12orf54Q6X4T0 127 aa13.45□□□□□ -0.26
TPM1-228ENST00000560975 CT55Q8WUE5 264 aa13.45□□□□□ -0.26
TPM1-228ENST00000560975 SLC25A2Q9BXI2 301 aa13.45□□□□□ -0.26
TPM1-228ENST00000560975 FOXA2Q9Y261 457 aaPredicted RBP13.45□□□□□ -0.26
TPM1-228ENST00000560975 PCSK5Q92824 1860 aa13.44□□□□□ -0.26
TPM1-228ENST00000560975 K7ERU9 68 aa13.44□□□□□ -0.26
TPM1-228ENST00000560975 ABHD17BQ5VST6 288 aa13.44□□□□□ -0.26
TPM1-228ENST00000560975 SARAFQ96BY9 339 aa13.44□□□□□ -0.26
TPM1-228ENST00000560975 DEFB127Q9H1M4 99 aa13.44□□□□□ -0.26
TPM1-228ENST00000560975 JPT1Q9UK76 154 aa13.44□□□□□ -0.26
TPM1-228ENST00000560975 PEX7O00628 323 aa13.44□□□□□ -0.26
TPM1-228ENST00000560975 PLAUP00749 431 aa13.44□□□□□ -0.26
TPM1-228ENST00000560975 IGHV3-48P01763 117 aa13.44□□□□□ -0.26
TPM1-228ENST00000560975 ZNRF1Q8ND25 227 aa13.44□□□□□ -0.26
TPM1-228ENST00000560975 LOXL3P58215 753 aa13.43□□□□□ -0.26
TPM1-228ENST00000560975 LHFPL4Q7Z7J7 247 aa13.43□□□□□ -0.26
TPM1-228ENST00000560975 DDB2Q92466 427 aa13.43□□□□□ -0.26
TPM1-228ENST00000560975 FAM167A-AS1Q96KT0 104 aa13.43□□□□□ -0.26
TPM1-228ENST00000560975 TMEM191AQ9H0A3 160 aa13.43□□□□□ -0.26
TPM1-228ENST00000560975 PCNX2A6NKB5 2137 aa13.43□□□□□ -0.26
TPM1-228ENST00000560975 SAA2P0DJI9 122 aaPredicted RBP13.43□□□□□ -0.26
TPM1-228ENST00000560975 SSBP2P81877 361 aaPredicted RBP13.42□□□□□ -0.26
TPM1-228ENST00000560975 OR10W1Q8NGF6 305 aa13.42□□□□□ -0.26
TPM1-228ENST00000560975 PGLYRP4Q96LB8 373 aa13.42□□□□□ -0.26
TPM1-228ENST00000560975 SCRT2Q9NQ03 307 aa13.42□□□□□ -0.26
TPM1-228ENST00000560975 APOA2P02652 100 aa13.42□□□□□ -0.26
TPM1-228ENST00000560975 UQCRFS1P47985 274 aa13.42□□□□□ -0.26
TPM1-228ENST00000560975 CXCL12P48061 93 aa13.42□□□□□ -0.26
TPM1-228ENST00000560975 FAM231DQ6ZW35 169 aa13.42□□□□□ -0.26
TPM1-228ENST00000560975 ZNF329Q86UD4 541 aa13.42□□□□□ -0.26
TPM1-228ENST00000560975 MED13Q9UHV7 2174 aa13.42□□□□□ -0.26
TPM1-228ENST00000560975 CD5LO43866 347 aa13.42□□□□□ -0.26
TPM1-228ENST00000560975 CSN3P07498 182 aa13.42□□□□□ -0.26
TPM1-228ENST00000560975 HIST1H1EP10412 219 aaKnown RBP13.42□□□□□ -0.26
TPM1-228ENST00000560975 CD46P15529 392 aa13.42□□□□□ -0.26
TPM1-228ENST00000560975 KIR2DS2P43631 304 aa13.42□□□□□ -0.26
TPM1-228ENST00000560975 RPS20P60866 119 aaKnown RBP13.42□□□□□ -0.26
TPM1-228ENST00000560975 RTL8BQ17RB0 113 aa13.42□□□□□ -0.26
TPM1-228ENST00000560975 TMEM238C9JI98 176 aa13.41□□□□□ -0.26
TPM1-228ENST00000560975 PPIAL4DF5H284 164 aa13.41□□□□□ -0.26
TPM1-228ENST00000560975 CRXO43186 299 aaPredicted RBP13.41□□□□□ -0.26
TPM1-228ENST00000560975 HBBP68871 147 aa13.41□□□□□ -0.26
TPM1-228ENST00000560975 CT45A1Q5HYN5 189 aa13.41□□□□□ -0.26
TPM1-228ENST00000560975 WFDC8Q8IUA0 241 aa13.41□□□□□ -0.26
TPM1-228ENST00000560975 CT45A3Q8NHU0 189 aa13.41□□□□□ -0.26
TPM1-228ENST00000560975 NAA38Q9BRA0 125 aaKnown RBP13.41□□□□□ -0.26
TPM1-228ENST00000560975 PAXXQ9BUH6 204 aa13.41□□□□□ -0.26
TPM1-228ENST00000560975 FNDC4Q9H6D8 234 aaPredicted RBP13.41□□□□□ -0.26
TPM1-228ENST00000560975 SVILO95425 2214 aa13.41□□□□□ -0.26
TPM1-228ENST00000560975 ICE1Q9Y2F5 2266 aa13.41□□□□□ -0.26
TPM1-228ENST00000560975 IGKV1D-17A0A075B6S4 117 aa13.41□□□□□ -0.26
TPM1-228ENST00000560975 K7ESF4 209 aa13.41□□□□□ -0.26
TPM1-228ENST00000560975 IGHV1-2P23083 117 aa13.41□□□□□ -0.26
TPM1-228ENST00000560975 A0A1B0GXF2 115 aa13.4□□□□□ -0.26
TPM1-228ENST00000560975 C7orf71A4D174 169 aa13.4□□□□□ -0.26
TPM1-228ENST00000560975 GPR183P32249 361 aa13.4□□□□□ -0.26
TPM1-228ENST00000560975 BLNKQ8WV28 456 aa13.4□□□□□ -0.26
TPM1-228ENST00000560975 DYSFO75923 2080 aa13.4□□□□□ -0.26
TPM1-228ENST00000560975 PATE3B3GLJ2 98 aa13.4□□□□□ -0.26
TPM1-228ENST00000560975 J3QW42 95 aa13.4□□□□□ -0.26
TPM1-228ENST00000560975 COX7A2P2O60397 106 aa13.4□□□□□ -0.26
TPM1-228ENST00000560975 TCTAP57738 103 aa13.4□□□□□ -0.26
TPM1-228ENST00000560975 FAM71F2Q6NXP2 309 aa13.4□□□□□ -0.26
TPM1-228ENST00000560975 LINC00322Q6ZN03 302 aaPredicted RBP13.4□□□□□ -0.26
TPM1-228ENST00000560975 MAP1LC3CQ9BXW4 147 aa13.4□□□□□ -0.26
TPM1-228ENST00000560975 CALYQ9NYX4 217 aa13.4□□□□□ -0.26
TPM1-228ENST00000560975 PEF1Q9UBV8 284 aaKnown RBP13.4□□□□□ -0.26
TPM1-228ENST00000560975 ZNF835Q9Y2P0 537 aa13.4□□□□□ -0.26
TPM1-228ENST00000560975 GAGE10A6NGK3 116 aa13.39□□□□□ -0.27
TPM1-228ENST00000560975 NTN3O00634 580 aaPredicted RBP13.39□□□□□ -0.27
TPM1-228ENST00000560975 CHRDL1Q9BU40 450 aa13.39□□□□□ -0.27
TPM1-228ENST00000560975 HEATR1Q9H583 2144 aaKnown RBP13.39□□□□□ -0.27
TPM1-228ENST00000560975 MEOX1P50221 254 aa13.39□□□□□ -0.27
TPM1-228ENST00000560975 PRCDQ00LT1 54 aa13.39□□□□□ -0.27
TPM1-228ENST00000560975 HIST1H1AQ02539 215 aaPredicted RBP13.39□□□□□ -0.27
TPM1-228ENST00000560975 ZNRD1Q9P1U0 126 aa13.39□□□□□ -0.27
TPM1-228ENST00000560975 FAM231BA6NCW3 169 aa13.38□□□□□ -0.27
TPM1-228ENST00000560975 IGKV1-16P04430 117 aa13.38□□□□□ -0.27
TPM1-228ENST00000560975 IGLC1P0CG04 106 aa13.38□□□□□ -0.27
TPM1-228ENST00000560975 OR2Z1Q8NG97 314 aa13.38□□□□□ -0.27
TPM1-228ENST00000560975 C19orf24Q9BVV8 132 aa13.38□□□□□ -0.27
TPM1-228ENST00000560975 TEX50A0A1B0GTY4 177 aa13.38□□□□□ -0.27
TPM1-228ENST00000560975 SRRM4A7MD48 611 aaKnown RBP13.38□□□□□ -0.27
TPM1-228ENST00000560975 FNDC10F2Z333 226 aa13.38□□□□□ -0.27
TPM1-228ENST00000560975 SLC25A5P05141 298 aaKnown RBP13.38□□□□□ -0.27
TPM1-228ENST00000560975 ARF6P62330 175 aa13.38□□□□□ -0.27
TPM1-228ENST00000560975 C6orf15Q6UXA7 325 aaPredicted RBP13.38□□□□□ -0.27
TPM1-228ENST00000560975 ATP5L2Q7Z4Y8 100 aa13.38□□□□□ -0.27
TPM1-228ENST00000560975 GTSF1Q8WW33 167 aa13.38□□□□□ -0.27
TPM1-228ENST00000560975 PRNDQ9UKY0 176 aa13.38□□□□□ -0.27
TPM1-228ENST00000560975 CHCHD1Q96BP2 118 aaKnown RBP13.38□□□□□ -0.27
TPM1-228ENST00000560975 MRPL32Q9BYC8 188 aaKnown RBP13.38□□□□□ -0.27
TPM1-228ENST00000560975 H3BTX0 84 aa13.37□□□□□ -0.27
TPM1-228ENST00000560975 MGST3O14880 152 aa13.37□□□□□ -0.27
TPM1-228ENST00000560975 RNASE2P10153 161 aaKnown RBP13.37□□□□□ -0.27
TPM1-228ENST00000560975 CD69Q07108 199 aa13.37□□□□□ -0.27
TPM1-228ENST00000560975 FAM201AQ5SY85 155 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms