RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 Q6ZRM9 215 aa12.83□□□□□ -0.36
TSPAN3-208ENST00000560514 FAM24BQ8N5W8 94 aa12.83□□□□□ -0.36
TSPAN3-208ENST00000560514 FCAMRQ8WWV6 532 aa12.83□□□□□ -0.36
TSPAN3-208ENST00000560514 TSC22D3Q99576 134 aa12.83□□□□□ -0.36
TSPAN3-208ENST00000560514 VSIRQ9H7M9 311 aa12.83□□□□□ -0.36
TSPAN3-208ENST00000560514 HSPG2P98160 4391 aa12.82□□□□□ -0.36
TSPAN3-208ENST00000560514 CDK2AP2O75956 126 aa12.82□□□□□ -0.36
TSPAN3-208ENST00000560514 KRASP01116 189 aa12.82□□□□□ -0.36
TSPAN3-208ENST00000560514 RLN1P04808 185 aa12.82□□□□□ -0.36
TSPAN3-208ENST00000560514 C4BPBP20851 252 aa12.82□□□□□ -0.36
TSPAN3-208ENST00000560514 LSM3P62310 102 aaKnown RBP12.82□□□□□ -0.36
TSPAN3-208ENST00000560514 Q6ZR54 194 aa12.82□□□□□ -0.36
TSPAN3-208ENST00000560514 STXBP6Q8NFX7 210 aa12.82□□□□□ -0.36
TSPAN3-208ENST00000560514 NSG2Q9Y328 171 aa12.82□□□□□ -0.36
TSPAN3-208ENST00000560514 A0A1W2PS18 150 aa12.81□□□□□ -0.36
TSPAN3-208ENST00000560514 KNCNA6PVL3 124 aa12.81□□□□□ -0.36
TSPAN3-208ENST00000560514 APOHP02749 345 aaPredicted RBP12.81□□□□□ -0.36
TSPAN3-208ENST00000560514 HRH1P35367 487 aa12.81□□□□□ -0.36
TSPAN3-208ENST00000560514 TSPAN5P62079 268 aa12.81□□□□□ -0.36
TSPAN3-208ENST00000560514 ACTL10Q5JWF8 245 aa12.81□□□□□ -0.36
TSPAN3-208ENST00000560514 TOMM20LQ6UXN7 152 aa12.81□□□□□ -0.36
TSPAN3-208ENST00000560514 PINX1Q96BK5 328 aaKnown RBP12.81□□□□□ -0.36
TSPAN3-208ENST00000560514 SCRT1Q9BWW7 348 aa12.81□□□□□ -0.36
TSPAN3-208ENST00000560514 COMMD3Q9UBI1 195 aa12.81□□□□□ -0.36
TSPAN3-208ENST00000560514 I3L2K1 104 aa12.8□□□□□ -0.36
TSPAN3-208ENST00000560514 MT-CO2P00403 227 aa12.8□□□□□ -0.36
TSPAN3-208ENST00000560514 IGHV3-48P01763 117 aa12.8□□□□□ -0.36
TSPAN3-208ENST00000560514 HLA-DMAP28067 261 aa12.8□□□□□ -0.36
TSPAN3-208ENST00000560514 RORCP51449 518 aa12.8□□□□□ -0.36
TSPAN3-208ENST00000560514 LILRB2Q8N423 598 aa12.8□□□□□ -0.36
TSPAN3-208ENST00000560514 GRAMD2BQ96HH9 432 aa12.8□□□□□ -0.36
TSPAN3-208ENST00000560514 FUNDC2Q9BWH2 189 aa12.8□□□□□ -0.36
TSPAN3-208ENST00000560514 CD74P04233 296 aa12.79□□□□□ -0.36
TSPAN3-208ENST00000560514 ZNF688P0C7X2 276 aa12.79□□□□□ -0.36
TSPAN3-208ENST00000560514 RCVRNP35243 200 aa12.79□□□□□ -0.36
TSPAN3-208ENST00000560514 G6PCP35575 357 aa12.79□□□□□ -0.36
TSPAN3-208ENST00000560514 NUTF2P61970 127 aaKnown RBP12.79□□□□□ -0.36
TSPAN3-208ENST00000560514 FAM210BQ96KR6 192 aa12.79□□□□□ -0.36
TSPAN3-208ENST00000560514 C1QTNF4Q9BXJ3 329 aa12.79□□□□□ -0.36
TSPAN3-208ENST00000560514 PUS1Q9Y606 427 aaKnown RBP eCLIP12.79□□□□□ -0.36
TSPAN3-208ENST00000560514 NPPCP23582 126 aa12.78□□□□□ -0.36
TSPAN3-208ENST00000560514 NPBWR1P48145 328 aa12.78□□□□□ -0.36
TSPAN3-208ENST00000560514 MZT2AQ6P582 158 aa12.78□□□□□ -0.36
TSPAN3-208ENST00000560514 ZNF600Q6ZNG1 722 aa12.78□□□□□ -0.36
TSPAN3-208ENST00000560514 CSNK1G2-AS1Q8NCQ2 148 aa12.78□□□□□ -0.36
TSPAN3-208ENST00000560514 NARS2Q96I59 477 aaKnown RBP12.78□□□□□ -0.36
TSPAN3-208ENST00000560514 FXYD6Q9H0Q3 95 aa12.78□□□□□ -0.36
TSPAN3-208ENST00000560514 K7EQG2 157 aa12.77□□□□□ -0.37
TSPAN3-208ENST00000560514 SPART-AS1P0CW21 52 aa12.77□□□□□ -0.37
TSPAN3-208ENST00000560514 VBP1P61758 197 aa12.77□□□□□ -0.37
TSPAN3-208ENST00000560514 NCS1P62166 190 aa12.77□□□□□ -0.37
TSPAN3-208ENST00000560514 RNF212Q495C1 297 aa12.77□□□□□ -0.37
TSPAN3-208ENST00000560514 TBC1D26Q86UD7 250 aa12.77□□□□□ -0.37
TSPAN3-208ENST00000560514 C15orf40Q8WUR7 153 aa12.77□□□□□ -0.37
TSPAN3-208ENST00000560514 ZNF486Q96H40 463 aaPredicted RBP12.77□□□□□ -0.37
TSPAN3-208ENST00000560514 SEC22AQ96IW7 307 aa12.77□□□□□ -0.37
TSPAN3-208ENST00000560514 ELK1P19419 428 aa12.76□□□□□ -0.37
TSPAN3-208ENST00000560514 EIF2B2P49770 351 aaKnown RBP12.76□□□□□ -0.37
TSPAN3-208ENST00000560514 HSPE1P61604 102 aaKnown RBP12.76□□□□□ -0.37
TSPAN3-208ENST00000560514 PHLDA2Q53GA4 152 aa12.76□□□□□ -0.37
TSPAN3-208ENST00000560514 H2BFWTQ7Z2G1 175 aa12.76□□□□□ -0.37
TSPAN3-208ENST00000560514 SNX29P2Q8IUI4 249 aa12.76□□□□□ -0.37
TSPAN3-208ENST00000560514 OR4A16Q8NH70 328 aa12.76□□□□□ -0.37
TSPAN3-208ENST00000560514 AP3S1Q92572 193 aa12.76□□□□□ -0.37
TSPAN3-208ENST00000560514 METTL26Q96S19 204 aa12.76□□□□□ -0.37
TSPAN3-208ENST00000560514 EMP1P54849 157 aa12.75□□□□□ -0.37
TSPAN3-208ENST00000560514 RND3P61587 244 aa12.75□□□□□ -0.37
TSPAN3-208ENST00000560514 ERHP84090 104 aaKnown RBP12.75□□□□□ -0.37
TSPAN3-208ENST00000560514 ZNF114Q8NC26 417 aa12.75□□□□□ -0.37
TSPAN3-208ENST00000560514 ZFAND3Q9H8U3 227 aa12.75□□□□□ -0.37
TSPAN3-208ENST00000560514 XCL2Q9UBD3 114 aa12.75□□□□□ -0.37
TSPAN3-208ENST00000560514 TMEM189A5PLL7 270 aa12.74□□□□□ -0.37
TSPAN3-208ENST00000560514 DBX1A6NMT0 343 aa12.74□□□□□ -0.37
TSPAN3-208ENST00000560514 HPGDSO60760 199 aa12.74□□□□□ -0.37
TSPAN3-208ENST00000560514 ZNF182P17025 639 aaPredicted RBP12.74□□□□□ -0.37
TSPAN3-208ENST00000560514 TBPP20226 339 aa12.74□□□□□ -0.37
TSPAN3-208ENST00000560514 P2RY1P47900 373 aa12.74□□□□□ -0.37
TSPAN3-208ENST00000560514 Q8N1X5 172 aa12.74□□□□□ -0.37
TSPAN3-208ENST00000560514 ARRDC1Q8N5I2 433 aa12.74□□□□□ -0.37
TSPAN3-208ENST00000560514 RAB40CQ96S21 281 aa12.74□□□□□ -0.37
TSPAN3-208ENST00000560514 SCRT2Q9NQ03 307 aa12.74□□□□□ -0.37
TSPAN3-208ENST00000560514 TMED3Q9Y3Q3 217 aa12.74□□□□□ -0.37
TSPAN3-208ENST00000560514 TEX48A0A1B0GUV7 120 aa12.73□□□□□ -0.37
TSPAN3-208ENST00000560514 INS-IGF2F8WCM5 200 aa12.73□□□□□ -0.37
TSPAN3-208ENST00000560514 SCGB2A1O75556 95 aa12.73□□□□□ -0.37
TSPAN3-208ENST00000560514 ATG12O94817 140 aa12.73□□□□□ -0.37
TSPAN3-208ENST00000560514 IGKV1-39P01597 117 aa12.73□□□□□ -0.37
TSPAN3-208ENST00000560514 IGKV1D-39P04432 117 aa12.73□□□□□ -0.37
TSPAN3-208ENST00000560514 PRCDQ00LT1 54 aa12.73□□□□□ -0.37
TSPAN3-208ENST00000560514 DHRS2Q13268 280 aa12.73□□□□□ -0.37
TSPAN3-208ENST00000560514 PSMG4Q5JS54 123 aa12.73□□□□□ -0.37
TSPAN3-208ENST00000560514 MTFP1Q9UDX5 166 aa12.73□□□□□ -0.37
TSPAN3-208ENST00000560514 NACAE9PAV3 2078 aa12.73□□□□□ -0.37
TSPAN3-208ENST00000560514 HELTA6NFD8 242 aa12.72□□□□□ -0.37
TSPAN3-208ENST00000560514 FAM25AB3EWG3 89 aa12.72□□□□□ -0.37
TSPAN3-208ENST00000560514 FAM25CB3EWG5 89 aa12.72□□□□□ -0.37
TSPAN3-208ENST00000560514 FAM25GB3EWG6 89 aa12.72□□□□□ -0.37
TSPAN3-208ENST00000560514 B3GALNT1O75752 331 aa12.72□□□□□ -0.37
TSPAN3-208ENST00000560514 HTN3P15516 51 aa12.72□□□□□ -0.37
TSPAN3-208ENST00000560514 TNP2Q05952 138 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms