RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 SPACA3Q8IXA5 215 aa9.29□□□□□ -0.92
LDLR-208ENST00000558518 ZCCHC24Q8N2G6 241 aaKnown RBP9.29□□□□□ -0.92
LDLR-208ENST00000558518 NUP35Q8NFH5 326 aa9.29□□□□□ -0.92
LDLR-208ENST00000558518 RAB37Q96AX2 223 aa9.29□□□□□ -0.92
LDLR-208ENST00000558518 DAZAP1Q96EP5 407 aaKnown RBP9.29□□□□□ -0.92
LDLR-208ENST00000558518 CALYQ9NYX4 217 aa9.29□□□□□ -0.92
LDLR-208ENST00000558518 SPRR3Q9UBC9 169 aa9.29□□□□□ -0.92
LDLR-208ENST00000558518 CHEK1O14757 476 aa9.29□□□□□ -0.92
LDLR-208ENST00000558518 KLF3P57682 345 aaPredicted RBP9.29□□□□□ -0.92
LDLR-208ENST00000558518 VWC2Q2TAL6 325 aa9.29□□□□□ -0.92
LDLR-208ENST00000558518 NPIPB3Q92617 1050 aa9.29□□□□□ -0.92
LDLR-208ENST00000558518 OR2V2Q96R30 315 aa9.29□□□□□ -0.92
LDLR-208ENST00000558518 CCL13Q99616 98 aa9.29□□□□□ -0.92
LDLR-208ENST00000558518 KLF13Q9Y2Y9 288 aaPredicted RBP9.29□□□□□ -0.92
LDLR-208ENST00000558518 ZGRF1Q86YA3 2104 aa9.29□□□□□ -0.92
LDLR-208ENST00000558518 NKX6-3A6NJ46 265 aa9.29□□□□□ -0.92
LDLR-208ENST00000558518 SP1P08047 785 aa9.29□□□□□ -0.92
LDLR-208ENST00000558518 PPOXP50336 477 aa9.29□□□□□ -0.92
LDLR-208ENST00000558518 C11orf53Q8IXP5 236 aa9.29□□□□□ -0.92
LDLR-208ENST00000558518 MUC15Q8N387 334 aa9.29□□□□□ -0.92
LDLR-208ENST00000558518 NUDT10Q8NFP7 164 aa9.29□□□□□ -0.92
LDLR-208ENST00000558518 H1FXQ92522 213 aaKnown RBP9.29□□□□□ -0.92
LDLR-208ENST00000558518 NUDT11Q96G61 164 aa9.29□□□□□ -0.92
LDLR-208ENST00000558518 C1orf159Q96HA4 380 aa9.29□□□□□ -0.92
LDLR-208ENST00000558518 LSM4Q9Y4Z0 139 aaKnown RBP9.29□□□□□ -0.92
LDLR-208ENST00000558518 TRAV9-2A0A087WT02 112 aa9.28□□□□□ -0.92
LDLR-208ENST00000558518 LOC389332A0A1B0GUA5 103 aa9.28□□□□□ -0.92
LDLR-208ENST00000558518 FBLL1A6NHQ2 334 aaKnown RBP9.28□□□□□ -0.92
LDLR-208ENST00000558518 ADH4P08319 380 aa9.28□□□□□ -0.92
LDLR-208ENST00000558518 CECR9P0C854 216 aa9.28□□□□□ -0.92
LDLR-208ENST00000558518 TM4SF20Q53R12 229 aa9.28□□□□□ -0.92
LDLR-208ENST00000558518 PMS2CLQ68D20 193 aa9.28□□□□□ -0.92
LDLR-208ENST00000558518 DHRS13Q6UX07 377 aa9.28□□□□□ -0.92
LDLR-208ENST00000558518 AP1S3Q96PC3 154 aa9.28□□□□□ -0.92
LDLR-208ENST00000558518 PAXXQ9BUH6 204 aa9.28□□□□□ -0.92
LDLR-208ENST00000558518 TMSB15BA0A087X1C1 80 aa9.28□□□□□ -0.92
LDLR-208ENST00000558518 PGPA6NDG6 321 aa9.28□□□□□ -0.92
LDLR-208ENST00000558518 NRN1LQ496H8 165 aa9.28□□□□□ -0.92
LDLR-208ENST00000558518 SPATA12Q7Z6I5 190 aa9.28□□□□□ -0.92
LDLR-208ENST00000558518 PPP1R35Q8TAP8 253 aa9.28□□□□□ -0.92
LDLR-208ENST00000558518 TRAV8-1A0A0A6YYK1 113 aa9.27□□□□□ -0.92
LDLR-208ENST00000558518 PPIAL4DF5H284 164 aa9.27□□□□□ -0.92
LDLR-208ENST00000558518 LAMTOR5O43504 91 aa9.27□□□□□ -0.92
LDLR-208ENST00000558518 LEPROTL1O95214 131 aa9.27□□□□□ -0.92
LDLR-208ENST00000558518 C8orf88P0DMB2 117 aa9.27□□□□□ -0.92
LDLR-208ENST00000558518 RBX1P62877 108 aa9.27□□□□□ -0.92
LDLR-208ENST00000558518 CT45A1Q5HYN5 189 aa9.27□□□□□ -0.92
LDLR-208ENST00000558518 GDF5OSQ5U4N7 250 aa9.27□□□□□ -0.92
LDLR-208ENST00000558518 FAM214BQ7L5A3 538 aa9.27□□□□□ -0.92
LDLR-208ENST00000558518 WFDC3Q8IUB2 231 aa9.27□□□□□ -0.92
LDLR-208ENST00000558518 CT45A3Q8NHU0 189 aa9.27□□□□□ -0.92
LDLR-208ENST00000558518 GSX1Q9H4S2 264 aaPredicted RBP9.27□□□□□ -0.92
LDLR-208ENST00000558518 TNFRSF19Q9NS68 423 aa9.27□□□□□ -0.92
LDLR-208ENST00000558518 IGKV1D-17A0A075B6S4 117 aa9.27□□□□□ -0.93
LDLR-208ENST00000558518 IZUMO1RA6ND01 250 aa9.27□□□□□ -0.93
LDLR-208ENST00000558518 C15orf61A6NNL5 157 aa9.27□□□□□ -0.93
LDLR-208ENST00000558518 MMP23AO75900 390 aa9.27□□□□□ -0.93
LDLR-208ENST00000558518 CTRLP40313 264 aa9.27□□□□□ -0.93
LDLR-208ENST00000558518 OR10J3Q5JRS4 329 aa9.27□□□□□ -0.93
LDLR-208ENST00000558518 FAM216BQ8N7L0 139 aa9.27□□□□□ -0.93
LDLR-208ENST00000558518 NEUROG1Q92886 237 aa9.27□□□□□ -0.93
LDLR-208ENST00000558518 TXNDC17Q9BRA2 123 aa9.27□□□□□ -0.93
LDLR-208ENST00000558518 TMEM70Q9BUB7 260 aa9.27□□□□□ -0.93
LDLR-208ENST00000558518 HILPDAQ9Y5L2 63 aa9.27□□□□□ -0.93
LDLR-208ENST00000558518 AREGP15514 252 aa9.27□□□□□ -0.93
LDLR-208ENST00000558518 ZNF766Q5HY98 468 aa9.27□□□□□ -0.93
LDLR-208ENST00000558518 ITLN1Q8WWA0 313 aa9.27□□□□□ -0.93
LDLR-208ENST00000558518 IFI27L2Q9H2X8 130 aa9.27□□□□□ -0.93
LDLR-208ENST00000558518 SAP30LQ9HAJ7 183 aa9.27□□□□□ -0.93
LDLR-208ENST00000558518 SERTM2A0A1B0GWG4 89 aa9.26□□□□□ -0.93
LDLR-208ENST00000558518 ZNF891A8MT65 544 aaPredicted RBP9.26□□□□□ -0.93
LDLR-208ENST00000558518 C9JCJ5 164 aa9.26□□□□□ -0.93
LDLR-208ENST00000558518 TBR1Q16650 682 aa9.26□□□□□ -0.93
LDLR-208ENST00000558518 OR8A1Q8NGG7 326 aa9.26□□□□□ -0.93
LDLR-208ENST00000558518 ZNF503Q96F45 646 aa9.26□□□□□ -0.93
LDLR-208ENST00000558518 HARBI1Q96MB7 349 aa9.26□□□□□ -0.93
LDLR-208ENST00000558518 OSTCQ9NRP0 149 aa9.26□□□□□ -0.93
LDLR-208ENST00000558518 IDI2-AS1Q9NZ38 188 aa9.26□□□□□ -0.93
LDLR-208ENST00000558518 LOC105371242A0A075B767 164 aa9.26□□□□□ -0.93
LDLR-208ENST00000558518 IQCF6A8MYZ5 107 aa9.26□□□□□ -0.93
LDLR-208ENST00000558518 DLX1P56177 255 aa9.26□□□□□ -0.93
LDLR-208ENST00000558518 TMEM177Q53S58 311 aa9.26□□□□□ -0.93
LDLR-208ENST00000558518 C10orf113Q5VZT2 155 aa9.26□□□□□ -0.93
LDLR-208ENST00000558518 TRBV9A0A0B4J1U6 114 aa9.26□□□□□ -0.93
LDLR-208ENST00000558518 SRRM4A7MD48 611 aaKnown RBP9.26□□□□□ -0.93
LDLR-208ENST00000558518 C9orf172C9J069 976 aa9.26□□□□□ -0.93
LDLR-208ENST00000558518 SS18L1O75177 396 aaPredicted RBP9.26□□□□□ -0.93
LDLR-208ENST00000558518 ORAOV1Q8WV07 137 aa9.26□□□□□ -0.93
LDLR-208ENST00000558518 CORO2AQ92828 525 aa9.26□□□□□ -0.93
LDLR-208ENST00000558518 FNDC4Q9H6D8 234 aaPredicted RBP9.26□□□□□ -0.93
LDLR-208ENST00000558518 TNRC6AQ8NDV7 1962 aaKnown RBP9.26□□□□□ -0.93
LDLR-208ENST00000558518 DMXL1Q9Y485 3027 aa9.26□□□□□ -0.93
LDLR-208ENST00000558518 APC2O95996 2303 aa9.26□□□□□ -0.93
LDLR-208ENST00000558518 C15orf65H3BRN8 121 aa9.25□□□□□ -0.93
LDLR-208ENST00000558518 TDHQ8IZJ6 230 aa9.25□□□□□ -0.93
LDLR-208ENST00000558518 SH3BGRL2Q9UJC5 107 aa9.25□□□□□ -0.93
LDLR-208ENST00000558518 DSCAMO60469 2012 aa9.25□□□□□ -0.93
LDLR-208ENST00000558518 ADAMTS20P59510 1910 aa9.25□□□□□ -0.93
LDLR-208ENST00000558518 IGHV2OR16-5A0A0B4J2B6 119 aa9.25□□□□□ -0.93
LDLR-208ENST00000558518 HTR1DP28221 377 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms