RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 DSTQ03001 7570 aaKnown RBP-0.37□□□□□ -2.47
VPS13C-205ENST00000558088 ADGRB2O60241 1585 aa-0.37□□□□□ -2.47
VPS13C-205ENST00000558088 IGLV3-32A0A0A0MS00 114 aa-0.38□□□□□ -2.47
VPS13C-205ENST00000558088 LOC100506127A0A0U1RQW1 187 aa-0.38□□□□□ -2.47
VPS13C-205ENST00000558088 K7EIL1 84 aa-0.38□□□□□ -2.47
VPS13C-205ENST00000558088 NUPR1O60356 82 aa-0.38□□□□□ -2.47
VPS13C-205ENST00000558088 OR2B3O76000 313 aa-0.38□□□□□ -2.47
VPS13C-205ENST00000558088 CD2P06729 351 aa-0.38□□□□□ -2.47
VPS13C-205ENST00000558088 COX6A1P12074 109 aa-0.38□□□□□ -2.47
VPS13C-205ENST00000558088 Q3ZCU0 254 aa-0.38□□□□□ -2.47
VPS13C-205ENST00000558088 SDHAF4Q5VUM1 108 aa-0.38□□□□□ -2.47
VPS13C-205ENST00000558088 CST9Q5W186 159 aa-0.38□□□□□ -2.47
VPS13C-205ENST00000558088 HAGHLQ6PII5 290 aaPredicted RBP-0.38□□□□□ -2.47
VPS13C-205ENST00000558088 HIST3H2BBQ8N257 126 aa-0.38□□□□□ -2.47
VPS13C-205ENST00000558088 SIGLECL1Q8N7X8 197 aa-0.38□□□□□ -2.47
VPS13C-205ENST00000558088 OR2T35Q8NGX2 323 aa-0.38□□□□□ -2.47
VPS13C-205ENST00000558088 OR10J5Q8NHC4 309 aa-0.38□□□□□ -2.47
VPS13C-205ENST00000558088 TMEM254Q8TBM7 123 aa-0.38□□□□□ -2.47
VPS13C-205ENST00000558088 DNAJB3Q8WWF6 145 aa-0.38□□□□□ -2.47
VPS13C-205ENST00000558088 MIXL1Q9H2W2 232 aa-0.38□□□□□ -2.47
VPS13C-205ENST00000558088 RIC1Q4ADV7 1423 aa-0.38□□□□□ -2.47
VPS13C-205ENST00000558088 RIMS2Q9UQ26 1411 aa-0.38□□□□□ -2.47
VPS13C-205ENST00000558088 MUC4Q99102 2169 aa-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 LRPPRCP42704 1394 aaKnown RBP-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 TCRBV4S1A1TA0A5B7 111 aa-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 F8W1H4 67 aa-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 H3BRM9 83 aa-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 PFDN6O15212 129 aa-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 TOX3O15405 576 aaPredicted RBP-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 TYMSP04818 313 aa-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 KCNJ3P48549 501 aa-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 PMS2P3Q13401 168 aa-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 LRRC26Q2I0M4 334 aa-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 BRMS1LQ5PSV4 323 aa-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 TEN1Q86WV5 123 aa-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 CD302Q8IX05 232 aa-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 ATOH7Q8N100 152 aa-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 TMEM161BQ8NDZ6 487 aa-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 OR52L1Q8NGH7 329 aa-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 OR13D1Q8NGV5 346 aa-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 TEX47Q8TBZ9 253 aa-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 MAP1LC3AQ9H492 121 aa-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 OSTCQ9NRP0 149 aa-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 SPANXB1Q9NS25 103 aaPredicted RBP-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 ERGIC3Q9Y282 383 aa-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 UTP11Q9Y3A2 253 aaKnown RBP-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 V9GYY5 206 aaPredicted RBP-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 MCM3APO60318 1980 aa-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 MYO3BQ8WXR4 1341 aa-0.39□□□□□ -2.47
VPS13C-205ENST00000558088 SSNA1O43805 119 aa-0.4□□□□□ -2.47
VPS13C-205ENST00000558088 HPGDSO60760 199 aa-0.4□□□□□ -2.47
VPS13C-205ENST00000558088 HLA-DRAP01903 254 aa-0.4□□□□□ -2.47
VPS13C-205ENST00000558088 S100A9P06702 114 aaKnown RBP-0.4□□□□□ -2.47
VPS13C-205ENST00000558088 S100A4P26447 101 aaKnown RBP-0.4□□□□□ -2.47
VPS13C-205ENST00000558088 ESRGQ1W209 222 aa-0.4□□□□□ -2.47
VPS13C-205ENST00000558088 Q5BKY6 102 aa-0.4□□□□□ -2.47
VPS13C-205ENST00000558088 COPS6Q7L5N1 327 aa-0.4□□□□□ -2.47
VPS13C-205ENST00000558088 OR51D1Q8NGF3 324 aa-0.4□□□□□ -2.47
VPS13C-205ENST00000558088 TERB2Q8NHR7 220 aa-0.4□□□□□ -2.47
VPS13C-205ENST00000558088 KCTD7Q96MP8 289 aa-0.4□□□□□ -2.47
VPS13C-205ENST00000558088 NHP2Q9NX24 153 aaKnown RBP-0.4□□□□□ -2.47
VPS13C-205ENST00000558088 HS3ST2Q9Y278 367 aa-0.4□□□□□ -2.47
VPS13C-205ENST00000558088 KIAA1549Q9HCM3 1950 aa-0.4□□□□□ -2.47
VPS13C-205ENST00000558088 SCN10AQ9Y5Y9 1956 aa-0.4□□□□□ -2.47
VPS13C-205ENST00000558088 COL4A5P29400 1685 aa-0.4□□□□□ -2.47
VPS13C-205ENST00000558088 FLNCQ14315 2725 aa-0.41□□□□□ -2.47
VPS13C-205ENST00000558088 ZNF727A8MUV8 499 aa-0.41□□□□□ -2.48
VPS13C-205ENST00000558088 EVPLLA8MZ36 301 aa-0.41□□□□□ -2.48
VPS13C-205ENST00000558088 GPR31O00270 319 aa-0.41□□□□□ -2.48
VPS13C-205ENST00000558088 BIRC5O15392 142 aa-0.41□□□□□ -2.48
VPS13C-205ENST00000558088 BRI3O95415 125 aa-0.41□□□□□ -2.48
VPS13C-205ENST00000558088 DEFA1P59665 94 aa-0.41□□□□□ -2.48
VPS13C-205ENST00000558088 RHOBP62745 196 aa-0.41□□□□□ -2.48
VPS13C-205ENST00000558088 SPATA45Q537H7 98 aa-0.41□□□□□ -2.48
VPS13C-205ENST00000558088 C1orf195Q5TG92 126 aa-0.41□□□□□ -2.48
VPS13C-205ENST00000558088 FUNDC1Q8IVP5 155 aa-0.41□□□□□ -2.48
VPS13C-205ENST00000558088 SYCE1Q8N0S2 351 aa-0.41□□□□□ -2.48
VPS13C-205ENST00000558088 TP73-AS1Q9UF72 201 aa-0.41□□□□□ -2.48
VPS13C-205ENST00000558088 LRP1Q07954 4544 aaKnown RBP-0.41□□□□□ -2.48
VPS13C-205ENST00000558088 NUP153P49790 1475 aaKnown RBP-0.41□□□□□ -2.48
VPS13C-205ENST00000558088 MAST2Q6P0Q8 1798 aa-0.42□□□□□ -2.48
VPS13C-205ENST00000558088 STRCQ7RTU9 1775 aa-0.42□□□□□ -2.48
VPS13C-205ENST00000558088 CACNA1CQ13936 2221 aa-0.42□□□□□ -2.48
VPS13C-205ENST00000558088 TRAV9-1A0A075B6T8 112 aa-0.42□□□□□ -2.48
VPS13C-205ENST00000558088 MKRN2OSH3BPM6 223 aa-0.42□□□□□ -2.48
VPS13C-205ENST00000558088 IGKV1-5P01602 117 aa-0.42□□□□□ -2.48
VPS13C-205ENST00000558088 TPM1P09493 284 aa-0.42□□□□□ -2.48
VPS13C-205ENST00000558088 RPL12P30050 165 aaKnown RBP-0.42□□□□□ -2.48
VPS13C-205ENST00000558088 NKX2-5P52952 324 aaPredicted RBP-0.42□□□□□ -2.48
VPS13C-205ENST00000558088 BLVRAP53004 296 aa-0.42□□□□□ -2.48
VPS13C-205ENST00000558088 FOXA3P55318 350 aaPredicted RBP-0.42□□□□□ -2.48
VPS13C-205ENST00000558088 C10orf99Q6UWK7 81 aa-0.42□□□□□ -2.48
VPS13C-205ENST00000558088 C2orf82Q6UX34 121 aa-0.42□□□□□ -2.48
VPS13C-205ENST00000558088 Q6ZS49 121 aa-0.42□□□□□ -2.48
VPS13C-205ENST00000558088 TRAPPC6BQ86SZ2 158 aa-0.42□□□□□ -2.48
VPS13C-205ENST00000558088 MRPL30Q8TCC3 161 aaKnown RBP-0.42□□□□□ -2.48
VPS13C-205ENST00000558088 PLAC4Q8WY50 150 aa-0.42□□□□□ -2.48
VPS13C-205ENST00000558088 SMIM19Q96E16 107 aa-0.42□□□□□ -2.48
VPS13C-205ENST00000558088 C11orf68Q9H3H3 251 aaKnown RBP-0.42□□□□□ -2.48
VPS13C-205ENST00000558088 HEATR1Q9H583 2144 aaKnown RBP-0.42□□□□□ -2.48
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms