RNA–Protein interactions for RNA: ENST00000557657.5

TMEM260-216, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,572 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-216ENST00000557657 HELTA6NFD8 242 aa17.08■□□□□ 0.32
TMEM260-216ENST00000557657 AREGP15514 252 aa17.08■□□□□ 0.32
TMEM260-216ENST00000557657 ERVFC1-1P60608 527 aa17.08■□□□□ 0.32
TMEM260-216ENST00000557657 CDSNQ15517 529 aa17.08■□□□□ 0.32
TMEM260-216ENST00000557657 FAM167A-AS1Q96KT0 104 aa17.08■□□□□ 0.32
TMEM260-216ENST00000557657 SLC25A2Q9BXI2 301 aa17.08■□□□□ 0.32
TMEM260-216ENST00000557657 SSUH2Q9Y2M2 353 aa17.08■□□□□ 0.32
TMEM260-216ENST00000557657 PSMB11A5LHX3 300 aa17.07■□□□□ 0.32
TMEM260-216ENST00000557657 K7ENP7 123 aa17.07■□□□□ 0.32
TMEM260-216ENST00000557657 SIAH2O43255 324 aa17.07■□□□□ 0.32
TMEM260-216ENST00000557657 PDPNQ86YL7 162 aa17.07■□□□□ 0.32
TMEM260-216ENST00000557657 TMEM186Q96B77 213 aa17.07■□□□□ 0.32
TMEM260-216ENST00000557657 MOSP00540 346 aa17.07■□□□□ 0.32
TMEM260-216ENST00000557657 PATE2Q6UY27 113 aa17.07■□□□□ 0.32
TMEM260-216ENST00000557657 IGKV1D-37A0A075B6S9 117 aa17.06■□□□□ 0.32
TMEM260-216ENST00000557657 GNG4P50150 75 aa17.06■□□□□ 0.32
TMEM260-216ENST00000557657 PDLIM4P50479 330 aa17.06■□□□□ 0.32
TMEM260-216ENST00000557657 OR5AU1Q8NGC0 362 aa17.06■□□□□ 0.32
TMEM260-216ENST00000557657 C8orf88P0DMB2 117 aa17.06■□□□□ 0.32
TMEM260-216ENST00000557657 TCL1AP56279 114 aa17.06■□□□□ 0.32
TMEM260-216ENST00000557657 TMEM167BQ9NRX6 74 aa17.06■□□□□ 0.32
TMEM260-216ENST00000557657 MED13LQ71F56 2210 aa17.06■□□□□ 0.32
TMEM260-216ENST00000557657 ZNF705GA8MUZ8 300 aaPredicted RBP17.05■□□□□ 0.32
TMEM260-216ENST00000557657 CD33P20138 364 aa17.05■□□□□ 0.32
TMEM260-216ENST00000557657 COX7A1P24310 79 aa17.05■□□□□ 0.32
TMEM260-216ENST00000557657 MFAP2P55001 183 aa17.05■□□□□ 0.32
TMEM260-216ENST00000557657 TMEM133Q9H2Q1 129 aa17.05■□□□□ 0.32
TMEM260-216ENST00000557657 V9GYV3 84 aa17.05■□□□□ 0.32
TMEM260-216ENST00000557657 APOBEC3AP31941 199 aaPredicted RBP17.05■□□□□ 0.32
TMEM260-216ENST00000557657 UBE2L3P68036 154 aaKnown RBP17.05■□□□□ 0.32
TMEM260-216ENST00000557657 JOSD1Q15040 202 aaPredicted RBP17.05■□□□□ 0.32
TMEM260-216ENST00000557657 OR8I2Q8N0Y5 310 aa17.05■□□□□ 0.32
TMEM260-216ENST00000557657 GSX1Q9H4S2 264 aaPredicted RBP17.05■□□□□ 0.32
TMEM260-216ENST00000557657 ZNF355PQ9NSJ1 428 aa17.05■□□□□ 0.32
TMEM260-216ENST00000557657 IL36BQ9NZH7 164 aa17.05■□□□□ 0.32
TMEM260-216ENST00000557657 CHD8Q9HCK8 2581 aa17.05■□□□□ 0.32
TMEM260-216ENST00000557657 VSTM5A8MXK1 200 aa17.04■□□□□ 0.32
TMEM260-216ENST00000557657 PPOXP50336 477 aa17.04■□□□□ 0.32
TMEM260-216ENST00000557657 MISP3Q96FF7 219 aa17.04■□□□□ 0.32
TMEM260-216ENST00000557657 DNAJC4Q9NNZ3 241 aa17.04■□□□□ 0.32
TMEM260-216ENST00000557657 C9JCJ5 164 aa17.04■□□□□ 0.32
TMEM260-216ENST00000557657 CA1P00915 261 aaPredicted RBP17.04■□□□□ 0.32
TMEM260-216ENST00000557657 CD3EP07766 207 aa17.04■□□□□ 0.32
TMEM260-216ENST00000557657 LINC00311Q8N616 119 aa17.04■□□□□ 0.32
TMEM260-216ENST00000557657 RALYQ9UKM9 306 aaKnown RBP17.04■□□□□ 0.32
TMEM260-216ENST00000557657 F2Z2F3 143 aa17.03■□□□□ 0.32
TMEM260-216ENST00000557657 MGST1P10620 155 aaKnown RBP17.03■□□□□ 0.32
TMEM260-216ENST00000557657 IER3P46695 156 aa17.03■□□□□ 0.32
TMEM260-216ENST00000557657 MMD2Q8IY49 270 aa17.03■□□□□ 0.32
TMEM260-216ENST00000557657 ZNF596Q8TC21 504 aa17.03■□□□□ 0.32
TMEM260-216ENST00000557657 KAAG1Q9UBP8 84 aa17.03■□□□□ 0.32
TMEM260-216ENST00000557657 TRAV34A0A0B4J273 112 aa17.03■□□□□ 0.32
TMEM260-216ENST00000557657 C22orf46C9J442 243 aa17.03■□□□□ 0.32
TMEM260-216ENST00000557657 TNXAQ16473 311 aa17.03■□□□□ 0.32
TMEM260-216ENST00000557657 MRPL41Q8IXM3 137 aaKnown RBP17.03■□□□□ 0.32
TMEM260-216ENST00000557657 CACNG8Q8WXS5 425 aa17.03■□□□□ 0.32
TMEM260-216ENST00000557657 SGK494Q96LW2 274 aa17.03■□□□□ 0.32
TMEM260-216ENST00000557657 NGBQ9NPG2 151 aa17.03■□□□□ 0.32
TMEM260-216ENST00000557657 IGHV2-26A0A0B4J1V2 119 aa17.02■□□□□ 0.32
TMEM260-216ENST00000557657 A0A1W2PN81 502 aa17.02■□□□□ 0.32
TMEM260-216ENST00000557657 COX7A2P2O60397 106 aa17.02■□□□□ 0.32
TMEM260-216ENST00000557657 IGLV2-8P01709 118 aa17.02■□□□□ 0.32
TMEM260-216ENST00000557657 VSTM2AQ8TAG5 236 aa17.02■□□□□ 0.32
TMEM260-216ENST00000557657 TP53TG3Q9ULZ0 132 aa17.02■□□□□ 0.32
TMEM260-216ENST00000557657 SPTBN1Q01082 2364 aaKnown RBP17.02■□□□□ 0.32
TMEM260-216ENST00000557657 GPX4P36969 197 aaPredicted RBP17.02■□□□□ 0.31
TMEM260-216ENST00000557657 TAS2R45P59539 299 aa17.02■□□□□ 0.31
TMEM260-216ENST00000557657 GBGT1Q8N5D6 347 aa17.02■□□□□ 0.31
TMEM260-216ENST00000557657 OR1L6Q8NGR2 347 aa17.02■□□□□ 0.31
TMEM260-216ENST00000557657 NCOR2Q9Y618 2525 aa17.02■□□□□ 0.31
TMEM260-216ENST00000557657 IGLC7A0M8Q6 106 aa17.01■□□□□ 0.31
TMEM260-216ENST00000557657 ORM2P19652 201 aa17.01■□□□□ 0.31
TMEM260-216ENST00000557657 VMA21Q3ZAQ7 101 aa17.01■□□□□ 0.31
TMEM260-216ENST00000557657 ST6GALNAC3Q8NDV1 305 aa17.01■□□□□ 0.31
TMEM260-216ENST00000557657 RNASEH2CQ8TDP1 164 aaKnown RBP17.01■□□□□ 0.31
TMEM260-216ENST00000557657 VKORC1Q9BQB6 163 aa17.01■□□□□ 0.31
TMEM260-216ENST00000557657 H3BTX0 84 aa17.01■□□□□ 0.31
TMEM260-216ENST00000557657 C10orf113Q5VZT2 155 aa17.01■□□□□ 0.31
TMEM260-216ENST00000557657 ZNF841Q6ZN19 808 aa17.01■□□□□ 0.31
TMEM260-216ENST00000557657 MUC15Q8N387 334 aa17.01■□□□□ 0.31
TMEM260-216ENST00000557657 MRPL18Q9H0U6 180 aaKnown RBP17.01■□□□□ 0.31
TMEM260-216ENST00000557657 A0A087X0M5 115 aa17■□□□□ 0.31
TMEM260-216ENST00000557657 A0A1B0GX30 115 aa17■□□□□ 0.31
TMEM260-216ENST00000557657 ZNF137PP52743 207 aa17■□□□□ 0.31
TMEM260-216ENST00000557657 FAM168AQ92567 244 aa17■□□□□ 0.31
TMEM260-216ENST00000557657 TCRBV4S1A1TA0A5B7 111 aa17■□□□□ 0.31
TMEM260-216ENST00000557657 GNG5P63218 68 aa17■□□□□ 0.31
TMEM260-216ENST00000557657 RBPJQ06330 500 aa17■□□□□ 0.31
TMEM260-216ENST00000557657 ZNF664Q8N3J9 261 aa17■□□□□ 0.31
TMEM260-216ENST00000557657 B9A039 149 aa16.99■□□□□ 0.31
TMEM260-216ENST00000557657 PRB4P10163 310 aaPredicted RBP16.99■□□□□ 0.31
TMEM260-216ENST00000557657 ATP5IP56385 69 aaPredicted RBP16.99■□□□□ 0.31
TMEM260-216ENST00000557657 LINC00310P59036 64 aa16.99■□□□□ 0.31
TMEM260-216ENST00000557657 YPEL3P61236 119 aaPredicted RBP16.99■□□□□ 0.31
TMEM260-216ENST00000557657 RPEL1Q2QD12 228 aa16.99■□□□□ 0.31
TMEM260-216ENST00000557657 LDLRAD2Q5SZI1 272 aa16.99■□□□□ 0.31
TMEM260-216ENST00000557657 LEMD1Q68G75 181 aa16.99■□□□□ 0.31
TMEM260-216ENST00000557657 SSBP3Q9BWW4 388 aaPredicted RBP16.99■□□□□ 0.31
TMEM260-216ENST00000557657 COL12A1Q99715 3063 aa16.99■□□□□ 0.31
TMEM260-216ENST00000557657 FSTL3O95633 263 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms