RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 PRR20DP86480 221 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 PRR20BP86481 221 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 PRR20AP86496 221 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 DEFB135Q30KP9 77 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 LRRC37A5PQ49AS3 106 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 DMRTA1Q5VZB9 504 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 TMEM268Q5VZI3 342 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 GGNBP1Q5YKI7 109 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 LGALS9CQ6DKI2 356 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 LAMTOR1Q6IAA8 161 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 ZNF66Q6ZN08 573 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 WFDC3Q8IUB2 231 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 FAM219AQ8IW50 185 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 OR11H4Q8NGC9 324 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 C5orf30Q96GV9 206 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 HARBI1Q96MB7 349 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 FAM210AQ96ND0 272 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 HSD17B10Q99714 261 aaKnown RBP6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 AIFM2Q9BRQ8 373 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 SLC25A31Q9H0C2 315 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 SLC35D1Q9NTN3 355 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 TNFSF18Q9UNG2 199 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 KLK5Q9Y337 293 aaPredicted RBP6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 DMRT1Q9Y5R6 373 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 DNAH11Q96DT5 4516 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 BORCS7-ASMTA0A0B4J1R7 106 aa6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 TRBV9A0A0B4J1U6 114 aa6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 IGKV1-6A0A0C4DH72 117 aa6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 A0A1B0GU03 582 aa6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 FAM223BA6NKX1 122 aa6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 SRRM4A7MD48 611 aaKnown RBP6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 ADAP1O75689 374 aa6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 NDUFB8O95169 186 aa6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 IFITM2Q01629 132 aa6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 ZNF818PQ6ZRF7 136 aa6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 C19orf35Q6ZS72 473 aa6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 SLC16A13Q7RTY0 426 aa6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 FAM223AQ8IWN6 122 aa6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 ZNF680Q8NEM1 530 aa6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 SCARB1Q8WTV0 552 aa6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 GLYATL2Q8WU03 294 aa6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 SRSF12Q8WXF0 261 aaKnown RBP6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 LSM10Q969L4 123 aaKnown RBP6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 ADTRPQ96IZ2 230 aa6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 CCL28Q9NRJ3 127 aa6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 TECRQ9NZ01 308 aaKnown RBP6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 MBD2Q9UBB5 411 aa6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 MLXQ9UH92 298 aa6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 PRELID3BQ9Y3B1 194 aa6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 DNAH17Q9UFH2 4485 aa6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 AGRNO00468 2067 aa6.08□□□□□ -1.44
CCDC88C-214ENST00000557507 TMEM213A2RRL7 107 aa6.07□□□□□ -1.44
CCDC88C-214ENST00000557507 MED6O75586 246 aa6.07□□□□□ -1.44
CCDC88C-214ENST00000557507 SCGB1D2O95969 90 aa6.07□□□□□ -1.44
CCDC88C-214ENST00000557507 CXCL2P19875 107 aa6.07□□□□□ -1.44
CCDC88C-214ENST00000557507 CBLN1P23435 193 aa6.07□□□□□ -1.44
CCDC88C-214ENST00000557507 BMI1P35226 326 aa6.07□□□□□ -1.44
CCDC88C-214ENST00000557507 NKX2-1P43699 371 aaPredicted RBP6.07□□□□□ -1.44
CCDC88C-214ENST00000557507 P2RY1P47900 373 aa6.07□□□□□ -1.44
CCDC88C-214ENST00000557507 AKR1C2P52895 323 aa6.07□□□□□ -1.44
CCDC88C-214ENST00000557507 TAGLNQ01995 201 aaKnown RBP6.07□□□□□ -1.44
CCDC88C-214ENST00000557507 ATP5G2Q06055 141 aa6.07□□□□□ -1.44
CCDC88C-214ENST00000557507 TNXAQ16473 311 aa6.07□□□□□ -1.44
CCDC88C-214ENST00000557507 C15orf32Q32M92 178 aa6.07□□□□□ -1.44
CCDC88C-214ENST00000557507 SP6Q3SY56 376 aa6.07□□□□□ -1.44
CCDC88C-214ENST00000557507 C10orf55Q5SWW7 151 aa6.07□□□□□ -1.44
CCDC88C-214ENST00000557507 SLC35G3Q8N808 338 aa6.07□□□□□ -1.44
CCDC88C-214ENST00000557507 OR51H1Q8NH63 302 aa6.07□□□□□ -1.44
CCDC88C-214ENST00000557507 OR1S1Q8NH92 325 aa6.07□□□□□ -1.44
CCDC88C-214ENST00000557507 PHLDA1Q8WV24 401 aaPredicted RBP6.07□□□□□ -1.44
CCDC88C-214ENST00000557507 AQP10Q96PS8 301 aa6.07□□□□□ -1.44
CCDC88C-214ENST00000557507 ZNF471Q9BX82 626 aaPredicted RBP6.07□□□□□ -1.44
CCDC88C-214ENST00000557507 SLC25A32Q9H2D1 315 aa6.07□□□□□ -1.44
CCDC88C-214ENST00000557507 TP53TG1Q9Y2A0 90 aa6.07□□□□□ -1.44
CCDC88C-214ENST00000557507 TRAV14DV4A0A0A6YYC5 116 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 A8MWP6 167 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 FAM90A26D6RGX4 464 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 G3V3Q6 166 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 LGALS9O00182 355 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 SHOXO15266 292 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 SPRY2O43597 315 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 ATP6V1G1O75348 118 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 OR2J3O76001 311 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 OR2C1O95371 312 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 IGHV3-23P01764 117 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 ATF4P18848 351 aaPredicted RBP6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 RPL12P30050 165 aaKnown RBP6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 HTR2BP41595 481 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 ERVK-16P61578 105 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 RPP30P78346 268 aaKnown RBP6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 BAXQ07812 192 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 RAB32Q13637 225 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 PRSS8Q16651 343 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 TM4SF20Q53R12 229 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 TMEM177Q53S58 311 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 Q5BKY6 102 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 CLLU1Q5K131 121 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 BTNL8Q6UX41 500 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms