RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 SPSB3Q6PJ21 355 aa8.74□□□□□ -1.01
CCDC88C-212ENST00000556767 ZBTB8BQ8NAP8 495 aaPredicted RBP8.74□□□□□ -1.01
CCDC88C-212ENST00000556767 RNASEH2CQ8TDP1 164 aaKnown RBP8.74□□□□□ -1.01
CCDC88C-212ENST00000556767 DYNLRB2Q8TF09 96 aa8.74□□□□□ -1.01
CCDC88C-212ENST00000556767 ATP6V0BQ99437 205 aa8.74□□□□□ -1.01
CCDC88C-212ENST00000556767 CHRDL1Q9BU40 450 aa8.74□□□□□ -1.01
CCDC88C-212ENST00000556767 C20orf24Q9BUV8 137 aa8.74□□□□□ -1.01
CCDC88C-212ENST00000556767 FNDC4Q9H6D8 234 aaPredicted RBP8.74□□□□□ -1.01
CCDC88C-212ENST00000556767 LGALS9O00182 355 aa8.73□□□□□ -1.01
CCDC88C-212ENST00000556767 SSSCA1O60232 199 aa8.73□□□□□ -1.01
CCDC88C-212ENST00000556767 PRAF2O60831 178 aa8.73□□□□□ -1.01
CCDC88C-212ENST00000556767 SCGB2A1O75556 95 aa8.73□□□□□ -1.01
CCDC88C-212ENST00000556767 CSN3P07498 182 aa8.73□□□□□ -1.01
CCDC88C-212ENST00000556767 CTSGP08311 255 aa8.73□□□□□ -1.01
CCDC88C-212ENST00000556767 SPNP16150 400 aa8.73□□□□□ -1.01
CCDC88C-212ENST00000556767 ADMP35318 185 aa8.73□□□□□ -1.01
CCDC88C-212ENST00000556767 RAB11AP62491 216 aa8.73□□□□□ -1.01
CCDC88C-212ENST00000556767 RPP30P78346 268 aaKnown RBP8.73□□□□□ -1.01
CCDC88C-212ENST00000556767 ID3Q02535 119 aa8.73□□□□□ -1.01
CCDC88C-212ENST00000556767 RELQ04864 619 aaPredicted RBP8.73□□□□□ -1.01
CCDC88C-212ENST00000556767 EGFEM1PQ0D2K5 195 aa8.73□□□□□ -1.01
CCDC88C-212ENST00000556767 SPANXN5Q5MJ07 72 aa8.73□□□□□ -1.01
CCDC88C-212ENST00000556767 ETFRF1Q6IPR1 90 aa8.73□□□□□ -1.01
CCDC88C-212ENST00000556767 UNQ9165/PRO28630Q6UXU0 137 aa8.73□□□□□ -1.01
CCDC88C-212ENST00000556767 GSG1LQ6UXU4 331 aa8.73□□□□□ -1.01
CCDC88C-212ENST00000556767 REC114Q7Z4M0 266 aa8.73□□□□□ -1.01
CCDC88C-212ENST00000556767 OR4D5Q8NGN0 318 aa8.73□□□□□ -1.01
CCDC88C-212ENST00000556767 TMEM170AQ8WVE7 144 aa8.73□□□□□ -1.01
CCDC88C-212ENST00000556767 PALMDQ9NP74 551 aa8.73□□□□□ -1.01
CCDC88C-212ENST00000556767 AURKAIP1Q9NWT8 199 aaPredicted RBP8.73□□□□□ -1.01
CCDC88C-212ENST00000556767 IGHV3OR16-8A0A075B7F1 116 aa8.72□□□□□ -1.01
CCDC88C-212ENST00000556767 C2orf70A6NJV1 201 aa8.72□□□□□ -1.01
CCDC88C-212ENST00000556767 SNRPGP15A8MWD9 76 aa8.72□□□□□ -1.01
CCDC88C-212ENST00000556767 H3BP45 60 aa8.72□□□□□ -1.01
CCDC88C-212ENST00000556767 WIPF1O43516 503 aa8.72□□□□□ -1.01
CCDC88C-212ENST00000556767 CLN5O75503 358 aa8.72□□□□□ -1.01
CCDC88C-212ENST00000556767 SLC25A4P12235 298 aa8.72□□□□□ -1.01
CCDC88C-212ENST00000556767 FOLR2P14207 255 aa8.72□□□□□ -1.01
CCDC88C-212ENST00000556767 FCGR2BP31994 310 aaPredicted RBP8.72□□□□□ -1.01
CCDC88C-212ENST00000556767 RND2P52198 227 aa8.72□□□□□ -1.01
CCDC88C-212ENST00000556767 ATP5IP56385 69 aaPredicted RBP8.72□□□□□ -1.01
CCDC88C-212ENST00000556767 TM4SF20Q53R12 229 aa8.72□□□□□ -1.01
CCDC88C-212ENST00000556767 IL34Q6ZMJ4 242 aa8.72□□□□□ -1.01
CCDC88C-212ENST00000556767 SLC16A13Q7RTY0 426 aa8.72□□□□□ -1.01
CCDC88C-212ENST00000556767 CACNG8Q8WXS5 425 aa8.72□□□□□ -1.01
CCDC88C-212ENST00000556767 ACY3Q96HD9 319 aa8.72□□□□□ -1.01
CCDC88C-212ENST00000556767 MARVELD1Q9BSK0 173 aa8.72□□□□□ -1.01
CCDC88C-212ENST00000556767 PSENENQ9NZ42 101 aa8.72□□□□□ -1.01
CCDC88C-212ENST00000556767 MRPL36Q9P0J6 103 aaKnown RBP8.72□□□□□ -1.01
CCDC88C-212ENST00000556767 ZNF256Q9Y2P7 627 aaPredicted RBP8.72□□□□□ -1.01
CCDC88C-212ENST00000556767 UFC1Q9Y3C8 167 aa8.72□□□□□ -1.01
CCDC88C-212ENST00000556767 LSM5Q9Y4Y9 91 aaKnown RBP8.72□□□□□ -1.01
CCDC88C-212ENST00000556767 C15orf62A8K5M9 175 aa8.71□□□□□ -1.02
CCDC88C-212ENST00000556767 L7N2F9 121 aa8.71□□□□□ -1.02
CCDC88C-212ENST00000556767 NDUFA4O00483 81 aa8.71□□□□□ -1.02
CCDC88C-212ENST00000556767 GOSR2O14653 212 aa8.71□□□□□ -1.02
CCDC88C-212ENST00000556767 ZNF207O43670 478 aaKnown RBP8.71□□□□□ -1.02
CCDC88C-212ENST00000556767 SSNA1O43805 119 aa8.71□□□□□ -1.02
CCDC88C-212ENST00000556767 TMEM50AO95807 157 aa8.71□□□□□ -1.02
CCDC88C-212ENST00000556767 PTTG1O95997 202 aa8.71□□□□□ -1.02
CCDC88C-212ENST00000556767 EDN2P20800 178 aa8.71□□□□□ -1.02
CCDC88C-212ENST00000556767 VAMP2P63027 116 aa8.71□□□□□ -1.02
CCDC88C-212ENST00000556767 CD69Q07108 199 aa8.71□□□□□ -1.02
CCDC88C-212ENST00000556767 PRSS54Q6PEW0 395 aa8.71□□□□□ -1.02
CCDC88C-212ENST00000556767 OR4X1Q8NH49 305 aa8.71□□□□□ -1.02
CCDC88C-212ENST00000556767 MRAPQ8TCY5 172 aa8.71□□□□□ -1.02
CCDC88C-212ENST00000556767 TMEM190Q8WZ59 177 aa8.71□□□□□ -1.02
CCDC88C-212ENST00000556767 SLC35E1Q96K37 410 aa8.71□□□□□ -1.02
CCDC88C-212ENST00000556767 C2orf50Q96LR7 162 aa8.71□□□□□ -1.02
CCDC88C-212ENST00000556767 PRR25Q96S07 402 aa8.71□□□□□ -1.02
CCDC88C-212ENST00000556767 ZNF436Q9C0F3 470 aaPredicted RBP8.71□□□□□ -1.02
CCDC88C-212ENST00000556767 STRAPQ9Y3F4 350 aaKnown RBP8.71□□□□□ -1.02
CCDC88C-212ENST00000556767 SELENOKQ9Y6D0 94 aa8.71□□□□□ -1.02
CCDC88C-212ENST00000556767 VWFP04275 2813 aa8.71□□□□□ -1.02
CCDC88C-212ENST00000556767 FBN3Q75N90 2809 aa8.7□□□□□ -1.02
CCDC88C-212ENST00000556767 TRAV30A0A087WSZ9 112 aa8.7□□□□□ -1.02
CCDC88C-212ENST00000556767 WI2-2373I1.2A0A1W2PRP0 233 aa8.7□□□□□ -1.02
CCDC88C-212ENST00000556767 TMEM213A2RRL7 107 aa8.7□□□□□ -1.02
CCDC88C-212ENST00000556767 A8MWP6 167 aa8.7□□□□□ -1.02
CCDC88C-212ENST00000556767 IGLV1-51P01701 117 aa8.7□□□□□ -1.02
CCDC88C-212ENST00000556767 MBPP02686 304 aaPredicted RBP8.7□□□□□ -1.02
CCDC88C-212ENST00000556767 CBLN1P23435 193 aa8.7□□□□□ -1.02
CCDC88C-212ENST00000556767 S100A10P60903 97 aa8.7□□□□□ -1.02
CCDC88C-212ENST00000556767 DCTN2Q13561 401 aaKnown RBP8.7□□□□□ -1.02
CCDC88C-212ENST00000556767 TIGITQ495A1 244 aa8.7□□□□□ -1.02
CCDC88C-212ENST00000556767 DEFB121Q5J5C9 76 aa8.7□□□□□ -1.02
CCDC88C-212ENST00000556767 NPIPB3Q92617 1050 aa8.7□□□□□ -1.02
CCDC88C-212ENST00000556767 RAB40CQ96S21 281 aa8.7□□□□□ -1.02
CCDC88C-212ENST00000556767 RCL1Q9Y2P8 373 aaKnown RBP8.7□□□□□ -1.02
CCDC88C-212ENST00000556767 NBEAL1Q6ZS30 2694 aa8.69□□□□□ -1.02
CCDC88C-212ENST00000556767 SIX6O95475 246 aa8.69□□□□□ -1.02
CCDC88C-212ENST00000556767 GP9P14770 177 aa8.69□□□□□ -1.02
CCDC88C-212ENST00000556767 OR10J1P30954 320 aa8.69□□□□□ -1.02
CCDC88C-212ENST00000556767 GPX4P36969 197 aaPredicted RBP8.69□□□□□ -1.02
CCDC88C-212ENST00000556767 BCAP31P51572 246 aa8.69□□□□□ -1.02
CCDC88C-212ENST00000556767 ELLP55199 621 aaPredicted RBP8.69□□□□□ -1.02
CCDC88C-212ENST00000556767 CD300EQ496F6 205 aaPredicted RBP8.69□□□□□ -1.02
CCDC88C-212ENST00000556767 OR8G2PQ6IF36 304 aa8.69□□□□□ -1.02
CCDC88C-212ENST00000556767 LCN12Q6JVE5 192 aa8.69□□□□□ -1.02
CCDC88C-212ENST00000556767 ADAMTSL5Q6ZMM2 481 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms