RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 DNAH9Q9NYC9 4486 aa15.57■□□□□ 0.08
CCDC88C-210ENST00000555995 A0A1B0GU03 582 aa15.56■□□□□ 0.08
CCDC88C-210ENST00000555995 ZNF785A8K8V0 405 aa15.56■□□□□ 0.08
CCDC88C-210ENST00000555995 C2orf83Q53S99 150 aa15.56■□□□□ 0.08
CCDC88C-210ENST00000555995 LRTM2Q8N967 370 aa15.56■□□□□ 0.08
CCDC88C-210ENST00000555995 SLC24A4Q8NFF2 622 aa15.56■□□□□ 0.08
CCDC88C-210ENST00000555995 WDR89Q96FK6 387 aaPredicted RBP15.56■□□□□ 0.08
CCDC88C-210ENST00000555995 WWC2-AS2Q96NR7 200 aa15.56■□□□□ 0.08
CCDC88C-210ENST00000555995 EDN2P20800 178 aa15.55■□□□□ 0.08
CCDC88C-210ENST00000555995 TNFRSF9Q07011 255 aa15.55■□□□□ 0.08
CCDC88C-210ENST00000555995 CNPY1Q3B7I2 92 aa15.55■□□□□ 0.08
CCDC88C-210ENST00000555995 LYZL2Q7Z4W2 148 aa15.55■□□□□ 0.08
CCDC88C-210ENST00000555995 SBSPONQ8IVN8 264 aa15.55■□□□□ 0.08
CCDC88C-210ENST00000555995 RNASEH2CQ8TDP1 164 aaKnown RBP15.55■□□□□ 0.08
CCDC88C-210ENST00000555995 SPAG8Q99932 426 aaPredicted RBP15.55■□□□□ 0.08
CCDC88C-210ENST00000555995 HSPB7Q9UBY9 170 aa15.55■□□□□ 0.08
CCDC88C-210ENST00000555995 TRAV30A0A087WSZ9 112 aa15.54■□□□□ 0.08
CCDC88C-210ENST00000555995 YIF1AO95070 293 aa15.54■□□□□ 0.08
CCDC88C-210ENST00000555995 SLC25A4P12235 298 aa15.54■□□□□ 0.08
CCDC88C-210ENST00000555995 SLC25A6P12236 298 aa15.54■□□□□ 0.08
CCDC88C-210ENST00000555995 ATP5IP56385 69 aaPredicted RBP15.54■□□□□ 0.08
CCDC88C-210ENST00000555995 BAK1Q16611 211 aa15.54■□□□□ 0.08
CCDC88C-210ENST00000555995 ETFRF1Q6IPR1 90 aa15.54■□□□□ 0.08
CCDC88C-210ENST00000555995 ZNF600Q6ZNG1 722 aa15.54■□□□□ 0.08
CCDC88C-210ENST00000555995 LINC00299Q6ZSB3 139 aa15.54■□□□□ 0.08
CCDC88C-210ENST00000555995 OR52B4Q8NGK2 314 aa15.54■□□□□ 0.08
CCDC88C-210ENST00000555995 OR1S1Q8NH92 325 aa15.54■□□□□ 0.08
CCDC88C-210ENST00000555995 OR10C1Q96KK4 312 aa15.54■□□□□ 0.08
CCDC88C-210ENST00000555995 U3KQ87 197 aa15.54■□□□□ 0.08
CCDC88C-210ENST00000555995 SFT2D2O95562 160 aa15.53■□□□□ 0.08
CCDC88C-210ENST00000555995 CD5P06127 495 aa15.53■□□□□ 0.08
CCDC88C-210ENST00000555995 NPY1RP25929 384 aa15.53■□□□□ 0.08
CCDC88C-210ENST00000555995 OR4X1Q8NH49 305 aa15.53■□□□□ 0.08
CCDC88C-210ENST00000555995 DTD1Q8TEA8 209 aa15.53■□□□□ 0.08
CCDC88C-210ENST00000555995 PRR13Q9NZ81 148 aa15.53■□□□□ 0.08
CCDC88C-210ENST00000555995 TMED3Q9Y3Q3 217 aa15.53■□□□□ 0.08
CCDC88C-210ENST00000555995 FAM90A26D6RGX4 464 aa15.52■□□□□ 0.08
CCDC88C-210ENST00000555995 TSPAN4O14817 238 aa15.52■□□□□ 0.08
CCDC88C-210ENST00000555995 CLN5O75503 358 aa15.52■□□□□ 0.08
CCDC88C-210ENST00000555995 NDUFB6O95139 128 aa15.52■□□□□ 0.08
CCDC88C-210ENST00000555995 IGHV3-48P01763 117 aa15.52■□□□□ 0.08
CCDC88C-210ENST00000555995 IL7P13232 177 aa15.52■□□□□ 0.08
CCDC88C-210ENST00000555995 PPP1R1AQ13522 171 aa15.52■□□□□ 0.08
CCDC88C-210ENST00000555995 IGHV7-4-1A0A0J9YVY3 117 aa15.51■□□□□ 0.07
CCDC88C-210ENST00000555995 OR11H12B2RN74 326 aa15.51■□□□□ 0.07
CCDC88C-210ENST00000555995 SCAF4O95104 1147 aaKnown RBP15.51■□□□□ 0.07
CCDC88C-210ENST00000555995 TMEM50AO95807 157 aa15.51■□□□□ 0.07
CCDC88C-210ENST00000555995 CD7P09564 240 aa15.51■□□□□ 0.07
CCDC88C-210ENST00000555995 TMEM116Q8NCL8 245 aa15.51■□□□□ 0.07
CCDC88C-210ENST00000555995 RCHY1Q96PM5 261 aa15.51■□□□□ 0.07
CCDC88C-210ENST00000555995 SPATA25Q9BR10 227 aa15.51■□□□□ 0.07
CCDC88C-210ENST00000555995 TM2D3Q9BRN9 247 aa15.51■□□□□ 0.07
CCDC88C-210ENST00000555995 SMPXQ9UHP9 88 aa15.51■□□□□ 0.07
CCDC88C-210ENST00000555995 TRAV14DV4A0A0A6YYC5 116 aa15.5■□□□□ 0.07
CCDC88C-210ENST00000555995 OR4C46A6NHA9 309 aa15.5■□□□□ 0.07
CCDC88C-210ENST00000555995 MED6O75586 246 aa15.5■□□□□ 0.07
CCDC88C-210ENST00000555995 IFNA10P01566 189 aa15.5■□□□□ 0.07
CCDC88C-210ENST00000555995 SDHCQ99643 169 aaPredicted RBP15.5■□□□□ 0.07
CCDC88C-210ENST00000555995 FNDC4Q9H6D8 234 aaPredicted RBP15.5■□□□□ 0.07
CCDC88C-210ENST00000555995 TMEM231Q9H6L2 316 aa15.5■□□□□ 0.07
CCDC88C-210ENST00000555995 NXPH3O95157 252 aa15.49■□□□□ 0.07
CCDC88C-210ENST00000555995 COQ8AQ8NI60 647 aa15.49■□□□□ 0.07
CCDC88C-210ENST00000555995 CCDC32Q9BV29 185 aa15.49■□□□□ 0.07
CCDC88C-210ENST00000555995 SRD5A3Q9H8P0 318 aa15.49■□□□□ 0.07
CCDC88C-210ENST00000555995 PUS1Q9Y606 427 aaKnown RBP eCLIP15.49■□□□□ 0.07
CCDC88C-210ENST00000555995 IGHV3OR16-8A0A075B7F1 116 aa15.48■□□□□ 0.07
CCDC88C-210ENST00000555995 ZNF207O43670 478 aaKnown RBP15.48■□□□□ 0.07
CCDC88C-210ENST00000555995 TOMM20LQ6UXN7 152 aa15.48■□□□□ 0.07
CCDC88C-210ENST00000555995 OR1S2Q8NGQ3 325 aa15.48■□□□□ 0.07
CCDC88C-210ENST00000555995 NARS2Q96I59 477 aaKnown RBP15.48■□□□□ 0.07
CCDC88C-210ENST00000555995 CIB3Q96Q77 187 aaPredicted RBP15.48■□□□□ 0.07
CCDC88C-210ENST00000555995 RHPN1-AS1Q9BWJ2 59 aa15.48■□□□□ 0.07
CCDC88C-210ENST00000555995 RBKSQ9H477 322 aa15.48■□□□□ 0.07
CCDC88C-210ENST00000555995 CHEK1O14757 476 aa15.47■□□□□ 0.07
CCDC88C-210ENST00000555995 PITX3O75364 302 aa15.47■□□□□ 0.07
CCDC88C-210ENST00000555995 RPP30P78346 268 aaKnown RBP15.47■□□□□ 0.07
CCDC88C-210ENST00000555995 HAGHQ16775 308 aa15.47■□□□□ 0.07
CCDC88C-210ENST00000555995 DEFB125Q8N687 156 aa15.47■□□□□ 0.07
CCDC88C-210ENST00000555995 S100ZQ8WXG8 99 aa15.47■□□□□ 0.07
CCDC88C-210ENST00000555995 FAM110AQ9BQ89 295 aa15.47■□□□□ 0.07
CCDC88C-210ENST00000555995 LINC00854A0A1B0GVQ3 168 aa15.46■□□□□ 0.07
CCDC88C-210ENST00000555995 A0A1W2PS18 150 aa15.46■□□□□ 0.07
CCDC88C-210ENST00000555995 C9orf170A2RU37 121 aa15.46■□□□□ 0.07
CCDC88C-210ENST00000555995 RND2P52198 227 aa15.46■□□□□ 0.07
CCDC88C-210ENST00000555995 CMC4P56277 68 aaPredicted RBP15.46■□□□□ 0.07
CCDC88C-210ENST00000555995 RAB11AP62491 216 aa15.46■□□□□ 0.07
CCDC88C-210ENST00000555995 METTL26Q96S19 204 aa15.46■□□□□ 0.07
CCDC88C-210ENST00000555995 ZFAND3Q9H8U3 227 aa15.46■□□□□ 0.07
CCDC88C-210ENST00000555995 LYRM1O43325 122 aa15.45■□□□□ 0.06
CCDC88C-210ENST00000555995 IFNA21P01568 189 aa15.45■□□□□ 0.06
CCDC88C-210ENST00000555995 IFNA4P05014 189 aa15.45■□□□□ 0.06
CCDC88C-210ENST00000555995 OR4E1P0C645 316 aa15.45■□□□□ 0.06
CCDC88C-210ENST00000555995 NPPCP23582 126 aa15.45■□□□□ 0.06
CCDC88C-210ENST00000555995 PAFAH1B2P68402 229 aa15.45■□□□□ 0.06
CCDC88C-210ENST00000555995 C4orf46Q504U0 113 aa15.45■□□□□ 0.06
CCDC88C-210ENST00000555995 PRSS54Q6PEW0 395 aa15.45■□□□□ 0.06
CCDC88C-210ENST00000555995 LINC00322Q6ZN03 302 aaPredicted RBP15.45■□□□□ 0.06
CCDC88C-210ENST00000555995 LYG2Q86SG7 212 aa15.45■□□□□ 0.06
CCDC88C-210ENST00000555995 ZNF414Q96IQ9 312 aa15.45■□□□□ 0.06
CCDC88C-210ENST00000555995 SELENOKQ9Y6D0 94 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms